Wall clock time and date at job start Tue Mar 31 2020 11:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33462 * 126.82596 * 2 1 4 4 N 1.28519 * 109.36497 * 180.24845 * 3 2 1 5 5 N 1.28701 * 110.62762 * 359.75210 * 4 3 2 6 6 H 0.97000 * 126.00973 * 179.97438 * 5 4 3 7 7 C 1.36841 * 107.98814 * 359.97438 * 5 4 3 8 8 C 1.47408 * 127.16852 * 179.97438 * 7 5 4 9 9 N 1.31393 * 126.49758 * 174.76503 * 8 7 5 10 10 N 1.28507 * 109.93052 * 179.97438 * 9 8 7 11 11 C 1.31378 * 110.11080 * 0.02562 * 10 9 8 12 12 N 1.38405 * 126.35410 * 180.02562 * 11 10 9 13 13 C 1.46903 * 111.00216 * 236.02357 * 12 11 10 14 14 C 1.50697 * 109.46965 * 190.00147 * 13 12 11 15 15 H 1.07995 * 120.00488 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99929 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99814 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00397 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46733 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47009 * 119.99681 * 18 16 14 21 21 H 1.48496 * 109.47554 * 240.00061 * 18 16 14 22 22 C 1.46902 * 110.99960 * 359.97438 * 12 11 10 23 23 C 1.53003 * 109.47333 * 69.99790 * 22 12 11 24 24 C 1.52999 * 117.49879 * 243.74761 * 23 22 12 25 25 C 1.53002 * 117.50120 * 175.08507 * 23 22 12 26 26 N 1.36506 * 107.28589 * 359.73475 * 11 10 9 27 27 C 1.46495 * 127.17320 * 180.28281 * 26 11 10 28 28 H 1.08996 * 109.47464 * 270.17413 * 1 2 3 29 29 H 1.09002 * 109.47039 * 30.17424 * 1 2 3 30 30 H 1.08997 * 109.47077 * 150.16817 * 1 2 3 31 31 H 1.08996 * 109.46787 * 309.99702 * 13 12 11 32 32 H 1.08996 * 109.47085 * 70.00023 * 13 12 11 33 33 H 0.97007 * 119.99774 * 179.97438 * 17 16 14 34 34 H 1.09006 * 109.47182 * 189.99736 * 22 12 11 35 35 H 1.08998 * 109.47166 * 309.99422 * 22 12 11 36 36 H 1.08999 * 115.54638 * 29.41889 * 23 22 12 37 37 H 1.08993 * 117.49686 * 359.97438 * 24 23 22 38 38 H 1.08997 * 117.49655 * 145.02447 * 24 23 22 39 39 H 1.08994 * 117.49679 * 214.98224 * 25 23 22 40 40 H 1.09002 * 117.49452 * 0.02562 * 25 23 22 41 41 H 1.09004 * 109.47346 * 264.40186 * 27 26 11 42 42 H 1.09002 * 109.47123 * 24.40300 * 27 26 11 43 43 H 1.08999 * 109.47296 * 144.39761 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3070 1.0683 0.0000 4 7 3.5329 0.6827 -0.0053 5 7 3.6041 -0.6024 -0.0036 6 1 4.4190 -1.1284 -0.0071 7 6 2.3279 -1.0962 0.0038 8 6 1.9213 -2.5131 0.0076 9 7 0.6952 -2.9740 0.1111 10 7 0.7059 -4.2586 0.0785 11 6 1.9380 -4.6970 -0.0471 12 7 2.3345 -6.0212 -0.1171 13 6 3.3215 -6.3311 0.9259 14 6 3.9098 -7.6950 0.6714 15 1 3.5829 -8.2739 -0.1797 16 6 4.8654 -8.2038 1.5251 17 7 5.2639 -7.4986 2.5613 18 14 5.5942 -9.8946 1.2102 19 1 4.9826 -10.4776 -0.0110 20 1 7.0618 -9.7732 1.0185 21 1 5.3181 -10.7770 2.3722 22 6 1.1775 -6.9224 -0.0314 23 6 0.3492 -6.8123 -1.3130 24 6 -1.0779 -6.2748 -1.1878 25 6 -0.8412 -7.7609 -1.4686 26 7 2.7538 -3.6040 -0.1023 27 6 4.2117 -3.5939 -0.2460 28 1 -0.3634 0.0031 1.0276 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5112 31 1 4.1151 -5.5841 0.9085 32 1 2.8348 -6.3215 1.9011 33 1 5.9360 -7.8567 3.1622 34 1 1.5245 -7.9486 0.0899 35 1 0.5623 -6.6434 0.8241 36 1 0.9074 -6.5535 -2.2127 37 1 -1.4266 -6.0001 -0.1924 38 1 -1.4586 -5.6628 -2.0054 39 1 -1.0662 -8.1258 -2.4707 40 1 -1.0343 -8.4632 -0.6576 41 1 4.6733 -3.5147 0.7382 42 1 4.5358 -4.5172 -0.7262 43 1 4.5107 -2.7423 -0.8572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647685064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:19 Heat of formation + Delta-G solvation = 197.290827 kcal Electronic energy + Delta-G solvation = -26974.057243 eV Core-core repulsion = 23286.737854 eV Total energy + Delta-G solvation = -3687.319389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.59099 -43.84427 -39.40100 -37.28163 -36.19250 -34.98368 -34.81535 -33.92975 -30.82313 -29.65338 -28.79424 -28.41005 -27.37810 -24.95662 -24.10152 -23.78948 -23.03729 -22.23423 -21.87108 -20.99800 -19.37035 -18.86533 -18.06319 -17.81073 -17.17278 -17.09056 -16.84313 -16.50684 -15.84599 -15.58045 -14.95911 -14.77844 -14.59676 -14.40782 -14.32063 -13.94695 -13.66913 -13.55003 -13.39315 -12.99486 -12.93401 -12.78108 -12.66759 -12.27001 -12.20540 -12.17038 -12.11294 -12.04357 -11.64544 -11.50404 -11.37279 -11.16659 -11.07572 -10.72539 -10.62155 -10.16250 -9.00470 -8.30196 -6.40227 -0.33141 0.85834 1.00419 1.27320 1.30521 1.41321 1.45196 1.56302 1.85323 2.35353 2.70572 2.87682 3.05666 3.11038 3.27885 3.40561 3.63484 3.82118 3.87791 3.98799 4.05055 4.14969 4.22733 4.33505 4.45899 4.51527 4.66814 4.67653 4.76149 4.81168 4.86890 4.90032 4.98405 4.99940 5.04128 5.15886 5.29274 5.38603 5.41882 5.43876 5.54539 5.62576 5.82562 5.87347 6.35806 6.71771 7.13149 7.30056 7.57706 8.80935 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.004318 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.163168 B = 6482.848592 C = 8361.771830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.036 3.964 3 N -0.281 5.281 4 N -0.063 5.063 5 N -0.373 5.373 6 H 0.459 0.541 7 C 0.057 3.943 8 C 0.217 3.783 9 N -0.254 5.254 10 N -0.327 5.327 11 C 0.385 3.615 12 N -0.447 5.447 13 C 0.206 3.794 14 C -0.526 4.526 15 H 0.072 0.928 16 C 0.017 3.983 17 N -0.927 5.927 18 Si 0.965 3.035 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.283 1.283 22 C 0.112 3.888 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.165 4.165 26 N -0.483 5.483 27 C 0.062 3.938 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.039 0.961 32 H -0.029 1.029 33 H 0.267 0.733 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 7.601 -7.036 11.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 N -0.148 5.148 4 N -0.042 5.042 5 N -0.102 5.102 6 H 0.310 0.690 7 C -0.077 4.077 8 C -0.049 4.049 9 N -0.097 5.097 10 N -0.174 5.174 11 C 0.029 3.971 12 N -0.169 5.169 13 C 0.082 3.918 14 C -0.564 4.564 15 H 0.090 0.910 16 C -0.183 4.183 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.209 1.209 22 C -0.015 4.015 23 C -0.173 4.173 24 C -0.186 4.186 25 C -0.203 4.203 26 N -0.179 5.179 27 C -0.080 4.080 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.057 0.943 32 H -0.011 1.011 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.413 8.841 -7.205 12.624 hybrid contribution 1.999 -2.100 0.803 3.008 sum -3.414 6.741 -6.402 9.904 Atomic orbital electron populations 1.20287 0.83340 1.04625 1.04357 1.22539 0.99506 0.86153 1.02322 1.74935 0.95499 1.26356 1.17981 1.78137 1.15905 0.92054 1.18149 1.45438 1.08517 1.06679 1.49519 0.69013 1.18583 0.85683 0.89510 1.13931 1.20957 0.87654 0.85667 1.10649 1.74210 1.16127 1.02964 1.16397 1.74722 1.15718 1.02482 1.24526 1.23078 0.86791 0.88430 0.98784 1.58821 1.15101 0.95574 1.47404 1.19771 0.88577 0.98153 0.85322 1.21296 1.22317 1.01354 1.11475 0.91032 1.25728 0.96650 1.01516 0.94380 1.70049 1.31584 1.39506 1.15461 0.85381 0.78127 0.79072 0.78397 1.18549 1.20424 1.20865 1.21565 0.87883 0.95853 0.96153 1.22003 0.90509 1.06982 0.97768 1.22797 0.97504 0.95806 1.02529 1.23072 1.00550 0.93099 1.03541 1.46145 1.09901 1.04893 1.56977 1.22497 0.74092 1.06633 1.04753 0.89315 0.88750 0.89582 0.94339 1.01070 0.92419 0.89253 0.94420 0.88956 0.89504 0.89095 0.87350 0.88475 0.88915 0.87728 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 10.03 71.24 0.71 -0.72 16 2 C 0.04 0.93 7.30 42.01 0.31 1.24 16 3 N -0.28 -7.75 12.36 -47.84 -0.59 -8.34 16 4 N -0.06 -1.60 13.35 37.02 0.49 -1.11 16 5 N -0.37 -8.24 6.75 -48.54 -0.33 -8.56 16 6 H 0.46 7.17 6.47 -219.91 -1.42 5.75 16 7 C 0.06 1.51 7.11 40.48 0.29 1.80 16 8 C 0.22 6.71 7.89 136.01 1.07 7.78 16 9 N -0.25 -8.79 10.64 -51.00 -0.54 -9.34 16 10 N -0.33 -12.26 9.56 -58.00 -0.55 -12.81 16 11 C 0.39 14.44 6.81 260.10 1.77 16.21 16 12 N -0.45 -17.76 4.49 -710.34 -3.19 -20.95 16 13 C 0.21 9.53 4.44 85.56 0.38 9.91 16 14 C -0.53 -25.94 8.31 25.60 0.21 -25.73 16 15 H 0.07 3.47 7.23 -2.91 -0.02 3.45 16 16 C 0.02 0.86 5.46 84.65 0.46 1.32 16 17 N -0.93 -49.66 13.29 21.45 0.28 -49.38 16 18 Si 0.97 39.78 29.54 68.60 2.03 41.81 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.11 4.17 4.78 86.30 0.41 4.58 16 23 C -0.15 -4.82 5.06 -10.79 -0.05 -4.87 16 24 C -0.15 -4.18 9.08 30.62 0.28 -3.90 16 25 C -0.17 -4.13 10.26 30.62 0.31 -3.82 16 26 N -0.48 -15.30 3.23 -540.37 -1.75 -17.04 16 27 C 0.06 1.50 8.49 127.77 1.08 2.59 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.98 6.90 -2.39 -0.02 1.96 16 31 H 0.04 1.77 5.22 -2.39 -0.01 1.76 16 32 H -0.03 -1.51 8.12 -2.39 -0.02 -1.53 16 33 H 0.27 13.56 8.31 -92.70 -0.77 12.79 16 34 H 0.09 3.49 6.60 -2.38 -0.02 3.48 16 35 H 0.04 1.47 7.48 -2.39 -0.02 1.46 16 36 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.09 2.62 8.03 -2.39 -0.02 2.60 16 38 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.09 2.16 7.93 -2.39 -0.02 2.14 16 42 H 0.10 2.87 7.35 -2.39 -0.02 2.85 16 43 H 0.11 1.72 6.34 -2.39 -0.02 1.70 16 Total: -1.00 -61.51 354.39 2.74 -58.77 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.36 Total: 20.56 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 7.24 Total: 6.39 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -6.17 Total: -127.53 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -61.51 2.74 -58.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647685064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.065 kcal (2) G-P(sol) polarization free energy of solvation -61.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds