Wall clock time and date at job start Tue Mar 31 2020 11:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33459 * 126.82849 * 2 1 4 4 N 1.28527 * 109.36357 * 179.97438 * 3 2 1 5 5 N 1.28699 * 110.62897 * 359.97438 * 4 3 2 6 6 H 0.96995 * 126.00802 * 180.02562 * 5 4 3 7 7 C 1.36847 * 107.98919 * 0.02562 * 5 4 3 8 8 C 1.47410 * 127.16562 * 180.02562 * 7 5 4 9 9 N 1.31393 * 126.48787 * 174.36314 * 8 7 5 10 10 N 1.28515 * 109.92254 * 179.97438 * 9 8 7 11 11 C 1.31368 * 110.11265 * 359.97438 * 10 9 8 12 12 N 1.38411 * 126.35721 * 180.02562 * 11 10 9 13 13 C 1.46850 * 110.99942 * 61.37808 * 12 11 10 14 14 C 1.53039 * 109.52504 * 174.16196 * 13 12 11 15 15 C 1.53115 * 109.27741 * 59.17908 * 14 13 12 16 16 C 1.50700 * 109.52406 * 182.44141 * 15 14 13 17 17 H 1.08002 * 120.00101 * 119.68114 * 16 15 14 18 18 C 1.37872 * 119.99746 * 299.68512 * 16 15 14 19 19 N 1.31516 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00090 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46884 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47356 * 119.99633 * 20 18 16 23 23 H 1.48500 * 109.47256 * 240.00126 * 20 18 16 24 24 C 1.53119 * 109.16276 * 302.34662 * 15 14 13 25 25 C 1.46845 * 111.00158 * 297.17011 * 12 11 10 26 26 N 1.36504 * 107.28819 * 359.76028 * 11 10 9 27 27 C 1.46503 * 127.17635 * 180.27440 * 26 11 10 28 28 H 1.09002 * 109.47204 * 90.01887 * 1 2 3 29 29 H 1.08992 * 109.47504 * 210.02603 * 1 2 3 30 30 H 1.09000 * 109.46609 * 330.02690 * 1 2 3 31 31 H 1.08995 * 109.46169 * 294.17948 * 13 12 11 32 32 H 1.08998 * 109.46113 * 54.14190 * 13 12 11 33 33 H 1.09000 * 109.50195 * 299.23762 * 14 13 12 34 34 H 1.09000 * 109.50322 * 179.11963 * 14 13 12 35 35 H 1.09005 * 109.52365 * 62.24868 * 15 14 13 36 36 H 0.96995 * 120.00702 * 179.97438 * 19 18 16 37 37 H 1.09005 * 109.50296 * 297.71501 * 24 15 14 38 38 H 1.09000 * 109.50710 * 177.59843 * 24 15 14 39 39 H 1.09001 * 109.46134 * 305.85409 * 25 12 11 40 40 H 1.09004 * 109.46446 * 65.81973 * 25 12 11 41 41 H 1.08993 * 109.47472 * 264.45995 * 27 26 11 42 42 H 1.09002 * 109.46736 * 24.46189 * 27 26 11 43 43 H 1.09004 * 109.47123 * 144.45529 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3069 1.0683 0.0000 4 7 3.5330 0.6825 0.0005 5 7 3.6040 -0.6025 0.0015 6 1 4.4189 -1.1286 0.0023 7 6 2.3277 -1.0963 0.0009 8 6 1.9211 -2.5133 0.0021 9 7 0.6950 -2.9742 0.1054 10 7 0.7057 -4.2588 0.0702 11 6 1.9375 -4.6970 -0.0580 12 7 2.3340 -6.0211 -0.1311 13 6 1.7453 -6.6827 -1.3026 14 6 2.3175 -8.0961 -1.4331 15 6 2.0000 -8.8892 -0.1624 16 6 2.6125 -10.2627 -0.2598 17 1 3.3442 -10.5805 0.4682 18 6 2.2387 -11.1135 -1.2783 19 7 1.3473 -10.7267 -2.1646 20 14 2.9984 -12.8157 -1.3995 21 1 3.9672 -13.0055 -0.2901 22 1 1.9298 -13.8426 -1.3053 23 1 3.7027 -12.9521 -2.6998 24 6 2.5823 -8.1539 1.0478 25 6 2.0025 -6.7388 1.1063 26 7 2.7534 -3.6039 -0.1116 27 6 4.2111 -3.5936 -0.2570 28 1 -0.3634 -0.0003 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3632 0.8902 0.5134 31 1 0.6634 -6.7385 -1.1827 32 1 1.9821 -6.1107 -2.1998 33 1 3.3978 -8.0404 -1.5669 34 1 1.8688 -8.5923 -2.2935 35 1 0.9195 -8.9784 -0.0491 36 1 1.0847 -11.3251 -2.8814 37 1 3.6669 -8.0991 0.9531 38 1 2.3229 -8.6915 1.9598 39 1 2.4261 -6.2077 1.9588 40 1 0.9193 -6.7944 1.2150 41 1 4.6739 -3.5178 0.7269 42 1 4.5345 -4.5153 -0.7407 43 1 4.5095 -2.7399 -0.8657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647687489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:16 Heat of formation + Delta-G solvation = 180.725722 kcal Electronic energy + Delta-G solvation = -26559.866244 eV Core-core repulsion = 22871.828538 eV Total energy + Delta-G solvation = -3688.037706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.76740 -42.93424 -38.50817 -35.49795 -34.35702 -34.17306 -33.10957 -31.49891 -30.12709 -29.36153 -28.08996 -27.64209 -25.85711 -23.97989 -23.18512 -22.60492 -22.35577 -21.19313 -20.77004 -18.82107 -18.49980 -17.39901 -16.99239 -16.53418 -16.21558 -16.01761 -15.84276 -14.62842 -14.39113 -14.01171 -13.81114 -13.60990 -13.32616 -13.22230 -12.93101 -12.81875 -12.66775 -12.57146 -12.17720 -11.84519 -11.72615 -11.30988 -11.16828 -11.06307 -11.00103 -10.81034 -10.60282 -10.54289 -10.40450 -10.31850 -10.03994 -9.65196 -9.18619 -8.91470 -8.63096 -8.52568 -8.40628 -6.07258 -4.13070 0.47733 1.70069 1.81429 2.01802 2.13985 2.76163 3.24223 3.33197 3.36099 3.58305 3.79837 4.02628 4.14554 4.37228 4.44165 4.58448 4.64243 4.96574 5.03214 5.22783 5.26842 5.45668 5.47354 5.54203 5.60162 5.64985 5.72882 5.83612 6.01074 6.02197 6.10814 6.17939 6.28540 6.31000 6.38216 6.63057 6.77373 6.90622 7.18844 7.24213 7.40839 7.65298 7.88042 7.95744 7.99561 8.34718 8.46658 8.90653 9.52321 10.99191 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.034898 B = 0.002689 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.137395 B =10411.057244 C =10688.989926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.043 3.957 3 N -0.260 5.260 4 N -0.056 5.056 5 N -0.391 5.391 6 H 0.446 0.554 7 C 0.059 3.941 8 C 0.222 3.778 9 N -0.242 5.242 10 N -0.301 5.301 11 C 0.385 3.615 12 N -0.468 5.468 13 C 0.068 3.932 14 C -0.103 4.103 15 C 0.046 3.954 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.105 4.105 25 C 0.072 3.928 26 N -0.470 5.470 27 C 0.070 3.930 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.797 17.234 3.424 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 N -0.128 5.128 4 N -0.036 5.036 5 N -0.117 5.117 6 H 0.294 0.706 7 C -0.075 4.075 8 C -0.043 4.043 9 N -0.086 5.086 10 N -0.146 5.146 11 C 0.030 3.970 12 N -0.196 5.196 13 C -0.057 4.057 14 C -0.142 4.142 15 C 0.027 3.973 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.143 4.143 25 C -0.055 4.055 26 N -0.164 5.164 27 C -0.073 4.073 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.465 18.500 3.345 19.323 hybrid contribution 1.323 -2.278 -0.278 2.648 sum 5.788 16.222 3.067 17.495 Atomic orbital electron populations 1.20301 0.84550 1.04643 1.03872 1.22214 0.98631 0.86409 1.02478 1.74971 0.95129 1.25817 1.16868 1.78215 1.16074 0.91420 1.17909 1.45459 1.08288 1.07142 1.50843 0.70622 1.18648 0.85032 0.90159 1.13647 1.20949 0.88155 0.85302 1.09906 1.74389 1.15140 1.03204 1.15838 1.74846 1.16922 1.02522 1.20312 1.22751 0.85032 0.89244 1.00002 1.59000 1.59093 0.94342 1.07123 1.22455 0.97833 0.97311 0.88136 1.21760 0.99423 0.89279 1.03710 1.18725 0.96350 0.93165 0.89030 1.21181 1.23905 0.98435 1.11461 0.92578 1.24969 0.94954 0.98277 0.95775 1.69856 1.31659 1.36149 1.15265 0.86570 0.79159 0.84572 0.77883 1.19839 1.21050 1.21091 1.21736 1.00333 0.91288 1.00945 1.22254 0.99817 0.95788 0.87608 1.46338 1.09123 1.06029 1.54891 1.22191 0.75674 1.05826 1.03639 0.90006 0.88447 0.90230 0.93301 0.92487 0.93580 0.88036 0.95475 0.92977 0.92279 0.92122 0.92296 0.93197 0.89562 0.86508 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.11 36.00 0.36 -0.36 16 2 C 0.04 0.50 7.30 -82.35 -0.60 -0.10 16 3 N -0.26 -3.24 12.36 33.53 0.41 -2.83 16 4 N -0.06 -0.63 13.35 60.35 0.81 0.17 16 5 N -0.39 -3.49 6.75 33.31 0.22 -3.26 16 6 H 0.45 2.36 6.49 -190.34 -1.23 1.13 16 7 C 0.06 0.65 7.11 -82.36 -0.59 0.07 16 8 C 0.22 2.86 7.89 -153.77 -1.21 1.65 16 9 N -0.24 -3.73 10.53 32.53 0.34 -3.38 16 10 N -0.30 -5.16 12.17 30.32 0.37 -4.79 16 11 C 0.38 5.96 6.40 -318.86 -2.04 3.92 16 12 N -0.47 -7.61 4.63 -174.55 -0.81 -8.41 16 13 C 0.07 1.25 5.37 -3.83 -0.02 1.23 16 14 C -0.10 -2.20 5.12 -26.65 -0.14 -2.34 16 15 C 0.05 1.04 2.16 -91.65 -0.20 0.85 16 16 C -0.51 -13.10 8.56 -34.44 -0.29 -13.40 16 17 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.61 5.31 -17.82 -0.09 1.52 16 19 N -0.89 -24.13 11.37 55.43 0.63 -23.50 16 20 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.11 -1.96 5.32 -26.65 -0.14 -2.11 16 25 C 0.07 1.19 5.38 -3.84 -0.02 1.17 16 26 N -0.47 -5.71 3.24 -122.15 -0.40 -6.11 16 27 C 0.07 0.51 10.24 59.85 0.61 1.13 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 1.02 6.70 -51.93 -0.35 0.67 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 2.46 6.17 -51.93 -0.32 2.14 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.12 0.93 8.10 -51.93 -0.42 0.50 16 43 H 0.07 0.35 6.36 -51.93 -0.33 0.01 16 LS Contribution 350.89 15.07 5.29 5.29 Total: -1.00 -30.29 350.89 -9.36 -39.65 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.84 Total: -1.36 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -4.37 Total: -6.78 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 1.58 Total: -52.12 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.29 -9.36 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647687489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.375 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds