Wall clock time and date at job start Tue Mar 31 2020 11:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33459 * 126.82849 * 2 1 4 4 N 1.28527 * 109.36357 * 179.97438 * 3 2 1 5 5 N 1.28699 * 110.62897 * 359.97438 * 4 3 2 6 6 H 0.96995 * 126.00802 * 180.02562 * 5 4 3 7 7 C 1.36847 * 107.98919 * 0.02562 * 5 4 3 8 8 C 1.47410 * 127.16562 * 180.02562 * 7 5 4 9 9 N 1.31393 * 126.48787 * 174.36314 * 8 7 5 10 10 N 1.28515 * 109.92254 * 179.97438 * 9 8 7 11 11 C 1.31368 * 110.11265 * 359.97438 * 10 9 8 12 12 N 1.38411 * 126.35721 * 180.02562 * 11 10 9 13 13 C 1.46850 * 110.99942 * 61.37808 * 12 11 10 14 14 C 1.53039 * 109.52504 * 174.16196 * 13 12 11 15 15 C 1.53115 * 109.27741 * 59.17908 * 14 13 12 16 16 C 1.50700 * 109.52406 * 182.44141 * 15 14 13 17 17 H 1.08002 * 120.00101 * 119.68114 * 16 15 14 18 18 C 1.37872 * 119.99746 * 299.68512 * 16 15 14 19 19 N 1.31516 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00090 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46884 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47356 * 119.99633 * 20 18 16 23 23 H 1.48500 * 109.47256 * 240.00126 * 20 18 16 24 24 C 1.53119 * 109.16276 * 302.34662 * 15 14 13 25 25 C 1.46845 * 111.00158 * 297.17011 * 12 11 10 26 26 N 1.36504 * 107.28819 * 359.76028 * 11 10 9 27 27 C 1.46503 * 127.17635 * 180.27440 * 26 11 10 28 28 H 1.09002 * 109.47204 * 90.01887 * 1 2 3 29 29 H 1.08992 * 109.47504 * 210.02603 * 1 2 3 30 30 H 1.09000 * 109.46609 * 330.02690 * 1 2 3 31 31 H 1.08995 * 109.46169 * 294.17948 * 13 12 11 32 32 H 1.08998 * 109.46113 * 54.14190 * 13 12 11 33 33 H 1.09000 * 109.50195 * 299.23762 * 14 13 12 34 34 H 1.09000 * 109.50322 * 179.11963 * 14 13 12 35 35 H 1.09005 * 109.52365 * 62.24868 * 15 14 13 36 36 H 0.96995 * 120.00702 * 179.97438 * 19 18 16 37 37 H 1.09005 * 109.50296 * 297.71501 * 24 15 14 38 38 H 1.09000 * 109.50710 * 177.59843 * 24 15 14 39 39 H 1.09001 * 109.46134 * 305.85409 * 25 12 11 40 40 H 1.09004 * 109.46446 * 65.81973 * 25 12 11 41 41 H 1.08993 * 109.47472 * 264.45995 * 27 26 11 42 42 H 1.09002 * 109.46736 * 24.46189 * 27 26 11 43 43 H 1.09004 * 109.47123 * 144.45529 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3069 1.0683 0.0000 4 7 3.5330 0.6825 0.0005 5 7 3.6040 -0.6025 0.0015 6 1 4.4189 -1.1286 0.0023 7 6 2.3277 -1.0963 0.0009 8 6 1.9211 -2.5133 0.0021 9 7 0.6950 -2.9742 0.1054 10 7 0.7057 -4.2588 0.0702 11 6 1.9375 -4.6970 -0.0580 12 7 2.3340 -6.0211 -0.1311 13 6 1.7453 -6.6827 -1.3026 14 6 2.3175 -8.0961 -1.4331 15 6 2.0000 -8.8892 -0.1624 16 6 2.6125 -10.2627 -0.2598 17 1 3.3442 -10.5805 0.4682 18 6 2.2387 -11.1135 -1.2783 19 7 1.3473 -10.7267 -2.1646 20 14 2.9984 -12.8157 -1.3995 21 1 3.9672 -13.0055 -0.2901 22 1 1.9298 -13.8426 -1.3053 23 1 3.7027 -12.9521 -2.6998 24 6 2.5823 -8.1539 1.0478 25 6 2.0025 -6.7388 1.1063 26 7 2.7534 -3.6039 -0.1116 27 6 4.2111 -3.5936 -0.2570 28 1 -0.3634 -0.0003 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3632 0.8902 0.5134 31 1 0.6634 -6.7385 -1.1827 32 1 1.9821 -6.1107 -2.1998 33 1 3.3978 -8.0404 -1.5669 34 1 1.8688 -8.5923 -2.2935 35 1 0.9195 -8.9784 -0.0491 36 1 1.0847 -11.3251 -2.8814 37 1 3.6669 -8.0991 0.9531 38 1 2.3229 -8.6915 1.9598 39 1 2.4261 -6.2077 1.9588 40 1 0.9193 -6.7944 1.2150 41 1 4.6739 -3.5178 0.7269 42 1 4.5345 -4.5153 -0.7407 43 1 4.5095 -2.7399 -0.8657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647687489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:15 Heat of formation + Delta-G solvation = 162.866218 kcal Electronic energy + Delta-G solvation = -26560.640690 eV Core-core repulsion = 22871.828538 eV Total energy + Delta-G solvation = -3688.812152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.66715 -43.98253 -39.96669 -36.44800 -35.95717 -35.02786 -34.23795 -33.12230 -31.67204 -30.48031 -29.00825 -28.46704 -27.55736 -24.92248 -24.50992 -23.93176 -23.75788 -22.25653 -21.87466 -20.35073 -19.42977 -18.58630 -18.29413 -17.92874 -17.24469 -17.17092 -16.82544 -16.48933 -15.73321 -15.12046 -14.82913 -14.63287 -14.60431 -14.40934 -14.18661 -14.00127 -13.91753 -13.59612 -13.25798 -13.05782 -13.00118 -12.83042 -12.78239 -12.40376 -12.20367 -12.17790 -11.97883 -11.92066 -11.87242 -11.44302 -11.42572 -11.06472 -10.88631 -10.72356 -10.39122 -9.92268 -9.67247 -8.06523 -6.19011 -0.44514 0.69802 0.84151 1.18226 1.23677 1.42338 1.45823 1.55480 1.70097 2.45698 2.55432 2.78790 3.21544 3.21803 3.36548 3.63529 3.77572 3.80725 4.07626 4.10994 4.15072 4.34005 4.37177 4.45197 4.45935 4.58823 4.62084 4.68427 4.73241 4.81983 4.87638 4.96119 5.00304 5.10667 5.21412 5.28672 5.38841 5.52296 5.56289 5.61807 5.71547 5.99726 6.11652 6.16679 6.40073 6.92837 7.09061 7.36228 7.49411 8.98524 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.034898 B = 0.002689 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.137395 B =10411.057244 C =10688.989926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.042 3.958 3 N -0.283 5.283 4 N -0.056 5.056 5 N -0.365 5.365 6 H 0.462 0.538 7 C 0.050 3.950 8 C 0.241 3.759 9 N -0.267 5.267 10 N -0.333 5.333 11 C 0.369 3.631 12 N -0.455 5.455 13 C 0.084 3.916 14 C -0.091 4.091 15 C 0.041 3.959 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.013 3.987 19 N -0.918 5.918 20 Si 0.950 3.050 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.282 1.282 24 C -0.094 4.094 25 C 0.079 3.921 26 N -0.459 5.459 27 C 0.055 3.945 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.068 0.932 35 H -0.010 1.010 36 H 0.259 0.741 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 18.598 4.039 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 N -0.150 5.150 4 N -0.036 5.036 5 N -0.095 5.095 6 H 0.314 0.686 7 C -0.084 4.084 8 C -0.025 4.025 9 N -0.111 5.111 10 N -0.178 5.178 11 C 0.013 3.987 12 N -0.181 5.181 13 C -0.043 4.043 14 C -0.129 4.129 15 C 0.023 3.977 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.185 4.185 19 N -0.558 5.558 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.208 1.208 24 C -0.132 4.132 25 C -0.047 4.047 26 N -0.152 5.152 27 C -0.086 4.086 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.008 0.992 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.637 19.874 3.971 21.326 hybrid contribution 0.697 -2.602 -0.458 2.732 sum 7.335 17.272 3.513 19.091 Atomic orbital electron populations 1.20345 0.83668 1.04878 1.04412 1.22544 0.99438 0.86373 1.01562 1.74993 0.95534 1.26353 1.18107 1.78166 1.15805 0.92124 1.17536 1.45413 1.08356 1.06587 1.49114 0.68590 1.18457 0.85861 0.89152 1.14957 1.21085 0.87672 0.85956 1.07794 1.74335 1.16647 1.02555 1.17567 1.74755 1.18360 1.03563 1.21128 1.22490 0.85417 0.89147 1.01689 1.58877 1.58361 0.94847 1.06050 1.22119 0.96361 0.95982 0.89850 1.21460 0.99073 0.90724 1.01650 1.18699 0.94144 0.93209 0.91693 1.21556 1.23765 0.99853 1.11228 0.92588 1.25701 0.95483 1.01675 0.95680 1.70002 1.32811 1.37188 1.15749 0.85628 0.78339 0.80417 0.77973 1.19022 1.21218 1.20808 1.21557 1.00461 0.92131 0.99026 1.22136 0.98834 0.94955 0.88794 1.46458 1.10662 1.04558 1.53484 1.22662 0.72775 1.07144 1.06020 0.89277 0.89388 0.88774 0.95388 0.91171 0.93498 0.91313 0.99150 0.93140 0.91488 0.91721 0.89590 0.94844 0.86740 0.86732 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.11 71.23 0.72 -0.62 16 2 C 0.04 0.89 7.30 42.01 0.31 1.20 16 3 N -0.28 -6.47 12.36 -47.84 -0.59 -7.06 16 4 N -0.06 -1.11 13.35 37.02 0.49 -0.62 16 5 N -0.37 -5.34 6.75 -48.53 -0.33 -5.67 16 6 H 0.46 3.02 6.49 -219.91 -1.43 1.60 16 7 C 0.05 0.99 7.11 40.48 0.29 1.28 16 8 C 0.24 5.75 7.89 136.02 1.07 6.82 16 9 N -0.27 -8.04 10.53 -51.01 -0.54 -8.58 16 10 N -0.33 -11.31 12.17 -58.00 -0.71 -12.01 16 11 C 0.37 10.95 6.40 260.11 1.66 12.62 16 12 N -0.45 -14.32 4.63 -706.14 -3.27 -17.58 16 13 C 0.08 3.08 5.37 86.33 0.46 3.54 16 14 C -0.09 -3.95 5.12 30.65 0.16 -3.79 16 15 C 0.04 1.92 2.16 -11.46 -0.02 1.89 16 16 C -0.53 -27.25 8.56 25.60 0.22 -27.03 16 17 H 0.06 2.84 7.74 -2.91 -0.02 2.81 16 18 C 0.01 0.69 5.31 84.65 0.45 1.14 16 19 N -0.92 -51.14 11.37 21.45 0.24 -50.90 16 20 Si 0.95 41.96 29.54 68.60 2.03 43.99 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 C -0.09 -3.45 5.32 30.65 0.16 -3.29 16 25 C 0.08 2.57 5.38 86.33 0.46 3.03 16 26 N -0.46 -10.02 3.24 -540.37 -1.75 -11.77 16 27 C 0.05 0.60 10.24 127.77 1.31 1.91 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.78 6.70 -2.39 -0.02 1.76 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 2.39 8.10 -2.39 -0.02 2.37 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 3.47 6.17 -2.39 -0.01 3.45 16 35 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 36 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 37 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.09 2.36 8.10 -2.39 -0.02 2.34 16 40 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.11 1.43 8.10 -2.39 -0.02 1.41 16 43 H 0.10 0.51 6.36 -2.39 -0.02 0.50 16 Total: -1.00 -66.89 350.89 2.46 -64.42 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -0.38 Total: 7.07 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 7.25 Total: -1.29 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -6.44 Total: -114.19 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -66.89 2.46 -64.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647687489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.289 kcal (2) G-P(sol) polarization free energy of solvation -66.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds