Wall clock time and date at job start Tue Mar 31 2020 13:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47417 * 2 1 4 4 C 1.53004 * 109.46622 * 240.00092 * 2 1 3 5 5 O 1.42898 * 109.45794 * 60.00355 * 4 2 1 6 6 C 1.53043 * 109.46222 * 300.02710 * 4 2 1 7 7 C 1.53198 * 109.30951 * 178.60119 * 6 4 2 8 8 N 1.46928 * 108.76159 * 54.65839 * 7 6 4 9 9 C 1.34779 * 120.62885 * 126.40737 * 8 7 6 10 10 O 1.21602 * 120.00058 * 176.10747 * 9 8 7 11 11 C 1.47432 * 119.99916 * 356.10904 * 9 8 7 12 12 C 1.39223 * 120.28615 * 53.15152 * 11 9 8 13 13 C 1.38221 * 120.09403 * 179.97438 * 12 11 9 14 14 C 1.38824 * 120.67553 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.56908 * 359.97438 * 14 13 12 16 16 C 1.40707 * 119.88511 * 359.74313 * 15 14 13 17 17 C 1.40885 * 120.33042 * 180.25370 * 16 15 14 18 18 H 1.07998 * 119.99972 * 213.69142 * 17 16 15 19 19 C 1.40280 * 120.00041 * 33.68811 * 17 16 15 20 20 N 1.30621 * 119.99756 * 358.50634 * 19 17 16 21 21 Si 1.86803 * 119.99884 * 178.50913 * 19 17 16 22 22 H 1.48495 * 109.47201 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46981 * 119.99720 * 21 19 17 24 24 H 1.48493 * 109.46847 * 239.99622 * 21 19 17 25 25 C 1.46923 * 118.74038 * 306.37525 * 8 7 6 26 26 C 1.53047 * 109.45575 * 179.97438 * 4 2 1 27 27 H 1.08994 * 109.47155 * 59.99613 * 1 2 3 28 28 H 1.09006 * 109.46846 * 299.99971 * 1 2 3 29 29 H 1.09001 * 109.47417 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47203 * 120.00455 * 2 1 3 31 31 H 1.08994 * 109.47274 * 300.00314 * 3 2 1 32 32 H 1.09008 * 109.46839 * 60.00657 * 3 2 1 33 33 H 1.09001 * 109.47072 * 179.97438 * 3 2 1 34 34 H 0.96701 * 114.00021 * 179.97438 * 5 4 2 35 35 H 1.09001 * 109.49697 * 298.56897 * 6 4 2 36 36 H 1.08994 * 109.49357 * 58.66563 * 6 4 2 37 37 H 1.09000 * 109.59661 * 294.87016 * 7 6 4 38 38 H 1.08993 * 109.58053 * 174.43906 * 7 6 4 39 39 H 1.08005 * 119.94994 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.66049 * 180.02562 * 13 12 11 41 41 H 1.08008 * 119.71566 * 179.97438 * 14 13 12 42 42 H 1.08003 * 120.05650 * 180.02562 * 15 14 13 43 43 H 0.97005 * 120.00006 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.59011 * 293.82961 * 25 8 7 45 45 H 1.09004 * 109.58249 * 173.39768 * 25 8 7 46 46 H 1.08994 * 109.49858 * 301.33479 * 26 4 2 47 47 H 1.09001 * 109.49867 * 61.44042 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.5634 -0.0473 -2.4158 6 6 1.5290 -2.1639 -1.2494 7 6 2.0125 -2.8724 -2.5188 8 7 3.4744 -2.7502 -2.6006 9 6 4.2477 -3.8441 -2.7486 10 8 5.4500 -3.7247 -2.8861 11 6 3.6359 -5.1855 -2.7440 12 6 2.5802 -5.4787 -3.6030 13 6 2.0099 -6.7377 -3.5957 14 6 2.4782 -7.7224 -2.7364 15 6 3.5200 -7.4626 -1.8759 16 6 4.1221 -6.1908 -1.8677 17 6 5.1929 -5.9162 -0.9943 18 1 5.3069 -4.9281 -0.5737 19 6 6.1110 -6.9264 -0.6709 20 7 5.9565 -8.1291 -1.1564 21 14 7.5544 -6.5514 0.4540 22 1 7.5038 -5.1255 0.8656 23 1 7.4817 -7.4175 1.6580 24 1 8.8254 -6.8129 -0.2679 25 6 4.0772 -1.4128 -2.5186 26 6 3.5704 -0.7206 -1.2494 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.8489 -0.4505 -3.2472 35 1 1.9126 -2.6857 -0.3727 36 1 0.4393 -2.1639 -1.2256 37 1 1.5574 -2.4071 -3.3931 38 1 1.7356 -3.9258 -2.4772 39 1 2.2069 -4.7215 -4.2767 40 1 1.1916 -6.9577 -4.2653 41 1 2.0209 -8.7008 -2.7433 42 1 3.8781 -8.2349 -1.2112 43 1 6.5911 -8.8278 -0.9325 44 1 3.7904 -0.8285 -3.3929 45 1 5.1626 -1.5033 -2.4768 46 1 3.9337 0.3068 -1.2256 47 1 3.9345 -1.2562 -0.3727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649356703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:08 Heat of formation + Delta-G solvation = -75.269723 kcal Electronic energy + Delta-G solvation = -27990.632568 eV Core-core repulsion = 24330.448908 eV Total energy + Delta-G solvation = -3660.183660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.37169 -38.60667 -36.87141 -35.08650 -34.18602 -33.72055 -31.54988 -30.58149 -29.92720 -29.30609 -27.22233 -25.73289 -24.98943 -23.03569 -22.30153 -20.97886 -20.67791 -19.77358 -18.72907 -17.35865 -17.05619 -16.03349 -15.64132 -15.20959 -15.10763 -14.72111 -14.53776 -14.38134 -14.12089 -13.83599 -13.64030 -13.07197 -12.97128 -12.69291 -12.52515 -12.23247 -12.09898 -11.98266 -11.78104 -11.73904 -11.58320 -11.33099 -11.27844 -11.17093 -11.13158 -10.85332 -10.84185 -10.75623 -10.48160 -10.15165 -9.95329 -9.74413 -9.64269 -9.30823 -8.73599 -8.13487 -7.55801 -7.42401 -6.75788 -4.48964 2.45046 2.77029 3.06722 3.13396 3.18721 3.53105 3.83839 3.93534 4.21867 4.59023 4.64307 4.66677 4.83926 5.04742 5.15917 5.28588 5.35680 5.40323 5.41469 5.50711 5.61773 5.68364 5.74066 5.80245 5.83623 5.93228 5.95537 5.97922 6.06016 6.11340 6.15184 6.19966 6.24999 6.29205 6.32025 6.43927 6.53991 6.94974 7.03992 7.07863 7.21443 7.41664 7.61181 7.64589 7.84923 7.92665 8.05402 8.18211 8.52054 8.76902 8.81568 9.14730 10.14676 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.004499 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.190248 B = 6222.357653 C = 7176.319684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.145 4.145 4 C 0.142 3.858 5 O -0.557 6.557 6 C -0.161 4.161 7 C 0.100 3.900 8 N -0.623 5.623 9 C 0.586 3.414 10 O -0.537 6.537 11 C -0.246 4.246 12 C -0.068 4.068 13 C -0.239 4.239 14 C -0.098 4.098 15 C -0.150 4.150 16 C 0.143 3.857 17 C -0.432 4.432 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.798 5.798 21 Si 0.917 3.083 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.272 1.272 25 C 0.109 3.891 26 C -0.160 4.160 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.372 0.628 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.281 0.719 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 11.785 1.780 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.202 4.202 4 C 0.102 3.898 5 O -0.364 6.364 6 C -0.200 4.200 7 C -0.023 4.023 8 N -0.359 5.359 9 C 0.378 3.622 10 O -0.413 6.413 11 C -0.251 4.251 12 C -0.087 4.087 13 C -0.258 4.258 14 C -0.117 4.117 15 C -0.169 4.169 16 C 0.140 3.860 17 C -0.462 4.462 18 H 0.094 0.906 19 C -0.143 4.143 20 N -0.424 5.424 21 Si 0.742 3.258 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.014 4.014 26 C -0.199 4.199 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.220 0.780 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.149 0.851 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.954 11.993 2.157 14.552 hybrid contribution 0.921 -0.350 -0.037 0.986 sum -7.033 11.643 2.120 13.767 Atomic orbital electron populations 1.21819 0.94784 1.01874 1.01713 1.21089 0.96473 0.96510 0.95810 1.21819 1.00874 0.95759 1.01732 1.21117 0.91894 0.90732 0.86089 1.86462 1.77098 1.57120 1.15735 1.22656 1.01659 0.95770 0.99895 1.21880 0.80398 1.03719 0.96301 1.48210 1.06554 1.06018 1.75136 1.18562 0.85861 0.84030 0.73733 1.90677 1.14995 1.86577 1.49098 1.19487 1.04911 0.94477 1.06218 1.20579 0.94789 0.96039 0.97296 1.20316 1.05013 0.94633 1.05869 1.20858 0.97201 0.97056 0.96574 1.21596 0.95596 0.98560 1.01169 1.17419 0.89708 0.89983 0.88937 1.19544 1.06904 0.97134 1.22597 0.90608 1.25936 0.99466 0.94110 0.94815 1.69654 1.34488 1.02253 1.36020 0.86096 0.80403 0.79849 0.79462 1.18412 1.19844 1.19680 1.21423 1.00444 0.83207 0.96280 1.22643 0.96182 1.01413 0.99644 0.91873 0.93210 0.92487 0.90419 0.91864 0.93202 0.92657 0.77951 0.90414 0.90072 0.92454 0.87321 0.88951 0.89032 0.89041 0.85128 0.90781 0.92454 0.88868 0.90201 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.70 37.16 0.32 -1.11 16 2 C -0.08 -0.85 2.34 -90.62 -0.21 -1.07 16 3 C -0.14 -1.43 8.69 37.15 0.32 -1.10 16 4 C 0.14 1.66 0.47 -90.57 -0.04 1.61 16 5 O -0.56 -6.38 11.53 -35.23 -0.41 -6.78 16 6 C -0.16 -2.05 4.80 -26.61 -0.13 -2.18 16 7 C 0.10 1.45 5.05 -3.71 -0.02 1.43 16 8 N -0.62 -10.84 2.97 -174.03 -0.52 -11.36 16 9 C 0.59 13.32 6.43 -12.52 -0.08 13.24 16 10 O -0.54 -14.11 15.61 5.28 0.08 -14.03 16 11 C -0.25 -5.85 4.97 -104.37 -0.52 -6.37 16 12 C -0.07 -1.43 7.39 -39.22 -0.29 -1.72 16 13 C -0.24 -4.95 10.03 -39.37 -0.39 -5.34 16 14 C -0.10 -2.17 10.01 -39.60 -0.40 -2.56 16 15 C -0.15 -3.74 8.66 -38.88 -0.34 -4.07 16 16 C 0.14 3.74 5.57 -106.54 -0.59 3.15 16 17 C -0.43 -11.63 7.85 -37.81 -0.30 -11.92 16 18 H 0.08 2.07 7.32 -52.49 -0.38 1.69 16 19 C 0.07 1.89 5.41 -17.30 -0.09 1.79 16 20 N -0.80 -20.53 10.63 55.56 0.59 -19.94 16 21 Si 0.92 19.59 29.56 -169.99 -5.03 14.57 16 22 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 C 0.11 1.62 6.00 -3.71 -0.02 1.60 16 26 C -0.16 -2.03 4.80 -26.61 -0.13 -2.16 16 27 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.56 6.40 -51.93 -0.33 0.23 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.66 7.68 -51.93 -0.40 0.27 16 32 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.05 0.54 6.40 -51.93 -0.33 0.20 16 34 H 0.37 3.79 5.84 45.56 0.27 4.06 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 0.93 6.36 -51.93 -0.33 0.60 16 37 H 0.06 0.70 7.02 -51.93 -0.36 0.33 16 38 H 0.11 1.78 4.69 -51.93 -0.24 1.54 16 39 H 0.09 1.68 7.28 -52.48 -0.38 1.30 16 40 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.13 3.37 6.16 -52.48 -0.32 3.04 16 43 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 44 H 0.06 0.72 7.02 -51.93 -0.36 0.36 16 45 H 0.09 1.58 7.03 -51.93 -0.36 1.22 16 46 H 0.08 0.90 6.36 -51.93 -0.33 0.57 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -29.30 357.13 -9.18 -38.47 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.38 Total: 10.49 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.90 Total: -16.80 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.07 Total: -31.30 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.32 Total: -20.82 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.30 -9.18 -38.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649356703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.796 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds