Wall clock time and date at job start Tue Mar 31 2020 13:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47417 * 2 1 4 4 C 1.53004 * 109.46622 * 240.00092 * 2 1 3 5 5 O 1.42898 * 109.45794 * 60.00355 * 4 2 1 6 6 C 1.53043 * 109.46222 * 300.02710 * 4 2 1 7 7 C 1.53198 * 109.30951 * 178.60119 * 6 4 2 8 8 N 1.46928 * 108.76159 * 54.65839 * 7 6 4 9 9 C 1.34779 * 120.62885 * 126.40737 * 8 7 6 10 10 O 1.21602 * 120.00058 * 176.10747 * 9 8 7 11 11 C 1.47432 * 119.99916 * 356.10904 * 9 8 7 12 12 C 1.39223 * 120.28615 * 53.15152 * 11 9 8 13 13 C 1.38221 * 120.09403 * 179.97438 * 12 11 9 14 14 C 1.38824 * 120.67553 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.56908 * 359.97438 * 14 13 12 16 16 C 1.40707 * 119.88511 * 359.74313 * 15 14 13 17 17 C 1.40885 * 120.33042 * 180.25370 * 16 15 14 18 18 H 1.07998 * 119.99972 * 213.69142 * 17 16 15 19 19 C 1.40280 * 120.00041 * 33.68811 * 17 16 15 20 20 N 1.30621 * 119.99756 * 358.50634 * 19 17 16 21 21 Si 1.86803 * 119.99884 * 178.50913 * 19 17 16 22 22 H 1.48495 * 109.47201 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46981 * 119.99720 * 21 19 17 24 24 H 1.48493 * 109.46847 * 239.99622 * 21 19 17 25 25 C 1.46923 * 118.74038 * 306.37525 * 8 7 6 26 26 C 1.53047 * 109.45575 * 179.97438 * 4 2 1 27 27 H 1.08994 * 109.47155 * 59.99613 * 1 2 3 28 28 H 1.09006 * 109.46846 * 299.99971 * 1 2 3 29 29 H 1.09001 * 109.47417 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47203 * 120.00455 * 2 1 3 31 31 H 1.08994 * 109.47274 * 300.00314 * 3 2 1 32 32 H 1.09008 * 109.46839 * 60.00657 * 3 2 1 33 33 H 1.09001 * 109.47072 * 179.97438 * 3 2 1 34 34 H 0.96701 * 114.00021 * 179.97438 * 5 4 2 35 35 H 1.09001 * 109.49697 * 298.56897 * 6 4 2 36 36 H 1.08994 * 109.49357 * 58.66563 * 6 4 2 37 37 H 1.09000 * 109.59661 * 294.87016 * 7 6 4 38 38 H 1.08993 * 109.58053 * 174.43906 * 7 6 4 39 39 H 1.08005 * 119.94994 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.66049 * 180.02562 * 13 12 11 41 41 H 1.08008 * 119.71566 * 179.97438 * 14 13 12 42 42 H 1.08003 * 120.05650 * 180.02562 * 15 14 13 43 43 H 0.97005 * 120.00006 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.59011 * 293.82961 * 25 8 7 45 45 H 1.09004 * 109.58249 * 173.39768 * 25 8 7 46 46 H 1.08994 * 109.49858 * 301.33479 * 26 4 2 47 47 H 1.09001 * 109.49867 * 61.44042 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.5634 -0.0473 -2.4158 6 6 1.5290 -2.1639 -1.2494 7 6 2.0125 -2.8724 -2.5188 8 7 3.4744 -2.7502 -2.6006 9 6 4.2477 -3.8441 -2.7486 10 8 5.4500 -3.7247 -2.8861 11 6 3.6359 -5.1855 -2.7440 12 6 2.5802 -5.4787 -3.6030 13 6 2.0099 -6.7377 -3.5957 14 6 2.4782 -7.7224 -2.7364 15 6 3.5200 -7.4626 -1.8759 16 6 4.1221 -6.1908 -1.8677 17 6 5.1929 -5.9162 -0.9943 18 1 5.3069 -4.9281 -0.5737 19 6 6.1110 -6.9264 -0.6709 20 7 5.9565 -8.1291 -1.1564 21 14 7.5544 -6.5514 0.4540 22 1 7.5038 -5.1255 0.8656 23 1 7.4817 -7.4175 1.6580 24 1 8.8254 -6.8129 -0.2679 25 6 4.0772 -1.4128 -2.5186 26 6 3.5704 -0.7206 -1.2494 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.8489 -0.4505 -3.2472 35 1 1.9126 -2.6857 -0.3727 36 1 0.4393 -2.1639 -1.2256 37 1 1.5574 -2.4071 -3.3931 38 1 1.7356 -3.9258 -2.4772 39 1 2.2069 -4.7215 -4.2767 40 1 1.1916 -6.9577 -4.2653 41 1 2.0209 -8.7008 -2.7433 42 1 3.8781 -8.2349 -1.2112 43 1 6.5911 -8.8278 -0.9325 44 1 3.7904 -0.8285 -3.3929 45 1 5.1626 -1.5033 -2.4768 46 1 3.9337 0.3068 -1.2256 47 1 3.9345 -1.2562 -0.3727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649356703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:06 Heat of formation + Delta-G solvation = -92.510891 kcal Electronic energy + Delta-G solvation = -27991.380201 eV Core-core repulsion = 24330.448908 eV Total energy + Delta-G solvation = -3660.931293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.64775 -40.07820 -38.59804 -36.48334 -35.56478 -35.06778 -32.86308 -31.86375 -31.66034 -30.89775 -28.05779 -27.45935 -26.36549 -24.27355 -23.76152 -22.75048 -21.95517 -20.79582 -20.14804 -19.13289 -18.45928 -17.46625 -17.24688 -16.81811 -16.27190 -16.12063 -15.76604 -15.64398 -15.31831 -15.19187 -15.00646 -14.54656 -14.38536 -14.19808 -13.89482 -13.60366 -13.43923 -13.16621 -13.10811 -12.96368 -12.91661 -12.79172 -12.73460 -12.52121 -12.34034 -12.29521 -12.23147 -11.80689 -11.69222 -11.65617 -11.55122 -11.21475 -11.09605 -10.68631 -10.45972 -9.60004 -9.31364 -9.25302 -8.62364 -6.44595 0.65113 1.00136 1.29233 1.41832 1.46012 1.95366 2.16194 2.24862 2.73287 3.31594 3.60187 3.64914 3.67237 3.77776 3.97800 4.10642 4.21936 4.24481 4.33224 4.39959 4.45860 4.50116 4.59528 4.65533 4.78698 4.81967 4.88167 4.91705 4.95534 4.99270 5.02364 5.06549 5.07560 5.15135 5.22598 5.23919 5.29831 5.36185 5.49002 5.58099 5.59963 5.72811 5.84138 6.01974 6.10366 6.26938 6.48150 6.65309 6.79381 6.86995 6.93388 7.44645 8.30000 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.004499 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.190248 B = 6222.357653 C = 7176.319684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.141 4.141 4 C 0.152 3.848 5 O -0.554 6.554 6 C -0.156 4.156 7 C 0.096 3.904 8 N -0.612 5.612 9 C 0.578 3.422 10 O -0.588 6.588 11 C -0.258 4.258 12 C -0.064 4.064 13 C -0.225 4.225 14 C -0.097 4.097 15 C -0.176 4.176 16 C 0.111 3.889 17 C -0.469 4.469 18 H 0.052 0.948 19 C 0.035 3.965 20 N -0.827 5.827 21 Si 0.977 3.023 22 H -0.271 1.271 23 H -0.252 1.252 24 H -0.268 1.268 25 C 0.106 3.894 26 C -0.153 4.153 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.379 0.621 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.288 0.712 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.098 0.902 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.830 13.201 0.916 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 C -0.198 4.198 4 C 0.111 3.889 5 O -0.362 6.362 6 C -0.194 4.194 7 C -0.026 4.026 8 N -0.346 5.346 9 C 0.370 3.630 10 O -0.468 6.468 11 C -0.263 4.263 12 C -0.082 4.082 13 C -0.244 4.244 14 C -0.116 4.116 15 C -0.196 4.196 16 C 0.108 3.892 17 C -0.499 4.499 18 H 0.071 0.929 19 C -0.179 4.179 20 N -0.454 5.454 21 Si 0.798 3.202 22 H -0.196 1.196 23 H -0.175 1.175 24 H -0.193 1.193 25 C -0.016 4.016 26 C -0.192 4.192 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.117 0.883 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.363 13.429 1.294 17.012 hybrid contribution 1.459 -0.718 0.105 1.629 sum -8.904 12.710 1.399 15.582 Atomic orbital electron populations 1.21784 0.93914 1.01984 1.02123 1.21121 0.97200 0.96868 0.94976 1.21786 1.00790 0.95129 1.02141 1.20986 0.90707 0.90225 0.86985 1.86479 1.76909 1.56993 1.15852 1.22619 1.02744 0.96032 0.98039 1.22101 0.78342 1.03407 0.98730 1.48156 1.07690 1.05718 1.73011 1.18577 0.85512 0.85109 0.73768 1.90638 1.17029 1.87367 1.51786 1.19792 1.05495 0.94804 1.06190 1.20928 0.93534 0.97167 0.96576 1.20803 1.04996 0.93714 1.04925 1.21201 0.95982 0.98796 0.95586 1.21527 0.97326 0.98044 1.02667 1.17746 0.90204 0.91385 0.89913 1.19520 1.08883 0.96623 1.24856 0.92945 1.26623 1.01391 0.93895 0.96024 1.69695 1.35614 1.02802 1.37273 0.85239 0.77355 0.79173 0.78417 1.19579 1.17550 1.19308 1.21616 0.98942 0.82235 0.98803 1.22602 0.97286 1.01753 0.97535 0.92181 0.92103 0.92500 0.90772 0.92198 0.92059 0.92765 0.77147 0.92540 0.88055 0.88854 0.89039 0.85553 0.84937 0.86284 0.86935 0.90121 0.89173 0.91652 0.88335 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.70 71.98 0.63 -1.79 16 2 C -0.08 -1.59 2.34 -10.79 -0.03 -1.62 16 3 C -0.14 -2.45 8.69 71.98 0.63 -1.82 16 4 C 0.15 3.21 0.47 -10.76 -0.01 3.20 16 5 O -0.55 -10.75 11.53 -148.98 -1.72 -12.47 16 6 C -0.16 -3.68 4.80 30.67 0.15 -3.54 16 7 C 0.10 2.57 5.05 86.36 0.44 3.00 16 8 N -0.61 -21.04 2.97 -822.77 -2.45 -23.48 16 9 C 0.58 27.00 6.43 86.66 0.56 27.56 16 10 O -0.59 -32.45 15.61 -4.04 -0.06 -32.52 16 11 C -0.26 -12.46 4.97 -19.70 -0.10 -12.56 16 12 C -0.06 -2.53 7.39 22.50 0.17 -2.37 16 13 C -0.23 -8.64 10.03 22.41 0.22 -8.41 16 14 C -0.10 -4.16 10.01 22.26 0.22 -3.94 16 15 C -0.18 -9.03 8.66 22.72 0.20 -8.83 16 16 C 0.11 6.04 5.57 -21.11 -0.12 5.92 16 17 C -0.47 -26.85 7.85 23.41 0.18 -26.66 16 18 H 0.05 3.11 7.32 -2.91 -0.02 3.09 16 19 C 0.03 1.85 5.41 85.37 0.46 2.31 16 20 N -0.83 -44.41 10.63 21.88 0.23 -44.17 16 21 Si 0.98 42.02 29.56 68.60 2.03 44.05 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 C 0.11 3.07 6.00 86.36 0.52 3.59 16 26 C -0.15 -3.74 4.80 30.68 0.15 -3.60 16 27 H 0.06 1.08 7.68 -2.39 -0.02 1.06 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.06 0.96 6.40 -2.39 -0.02 0.95 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.09 7.68 -2.39 -0.02 1.07 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 0.94 6.40 -2.39 -0.02 0.92 16 34 H 0.38 6.15 5.84 -74.06 -0.43 5.72 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 2.02 6.36 -2.39 -0.02 2.01 16 37 H 0.09 1.88 7.02 -2.39 -0.02 1.87 16 38 H 0.09 2.82 4.69 -2.39 -0.01 2.81 16 39 H 0.13 4.13 7.28 -2.91 -0.02 4.11 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 41 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.11 6.09 6.16 -2.91 -0.02 6.07 16 43 H 0.29 13.96 8.29 -92.70 -0.77 13.19 16 44 H 0.09 2.04 7.02 -2.39 -0.02 2.03 16 45 H 0.06 2.29 7.03 -2.39 -0.02 2.28 16 46 H 0.10 2.06 6.36 -2.39 -0.02 2.05 16 47 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -67.97 357.13 2.86 -65.11 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.56 Total: 33.04 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 4.27 Total: -29.55 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -2.21 Total: -67.66 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.78 Total: -44.99 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -67.97 2.86 -65.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649356703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.402 kcal (2) G-P(sol) polarization free energy of solvation -67.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds