Wall clock time and date at job start Tue Mar 31 2020 13:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46877 * 2 1 4 4 C 1.52994 * 109.47257 * 120.00120 * 2 1 3 5 5 O 1.42908 * 109.46183 * 65.02976 * 4 2 1 6 6 C 1.53043 * 109.46049 * 184.99859 * 4 2 1 7 7 C 1.53188 * 109.31450 * 181.37029 * 6 4 2 8 8 N 1.46933 * 108.77894 * 305.36854 * 7 6 4 9 9 C 1.34771 * 120.62994 * 233.58568 * 8 7 6 10 10 O 1.21585 * 120.00140 * 355.78733 * 9 8 7 11 11 C 1.47646 * 120.00020 * 175.78410 * 9 8 7 12 12 C 1.40009 * 119.89171 * 46.00938 * 11 9 8 13 13 C 1.36323 * 120.10468 * 179.97438 * 12 11 9 14 14 C 1.40878 * 119.89548 * 0.02562 * 13 12 11 15 15 C 1.41107 * 120.10884 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99578 * 29.37704 * 15 14 13 17 17 C 1.40222 * 120.00101 * 209.37359 * 15 14 13 18 18 N 1.30645 * 120.00258 * 10.65073 * 17 15 14 19 19 Si 1.86809 * 119.99890 * 190.65013 * 17 15 14 20 20 H 1.48498 * 109.46882 * 60.00250 * 19 17 15 21 21 H 1.48499 * 109.47030 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46840 * 300.00345 * 19 17 15 23 23 C 1.40893 * 119.79123 * 0.02562 * 14 13 12 24 24 C 1.36316 * 119.89129 * 359.97438 * 23 14 13 25 25 C 1.46927 * 118.73468 * 53.85759 * 8 7 6 26 26 C 1.53040 * 109.45145 * 305.06070 * 4 2 1 27 27 H 1.09000 * 109.46904 * 299.99491 * 1 2 3 28 28 H 1.08996 * 109.47560 * 60.00176 * 1 2 3 29 29 H 1.09003 * 109.46716 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46971 * 239.99957 * 2 1 3 31 31 H 1.09002 * 109.47177 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47154 * 300.00313 * 3 2 1 33 33 H 1.09001 * 109.47354 * 60.00192 * 3 2 1 34 34 H 0.96697 * 113.99806 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.49251 * 61.42099 * 6 4 2 36 36 H 1.09002 * 109.50109 * 301.32495 * 6 4 2 37 37 H 1.09000 * 109.58866 * 185.58339 * 7 6 4 38 38 H 1.08999 * 109.58574 * 65.15646 * 7 6 4 39 39 H 1.08001 * 119.94677 * 0.28093 * 12 11 9 40 40 H 1.08006 * 120.05089 * 180.02562 * 13 12 11 41 41 H 0.97007 * 119.99950 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.05809 * 179.97438 * 23 14 13 43 43 H 1.08007 * 119.94796 * 180.02562 * 24 23 14 44 44 H 1.08994 * 109.59011 * 65.92958 * 25 8 7 45 45 H 1.09004 * 109.57988 * 186.35974 * 25 8 7 46 46 H 1.08996 * 109.49573 * 298.57487 * 26 4 2 47 47 H 1.08997 * 109.49590 * 58.67121 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6625 -2.0983 1.1914 6 6 3.5653 -0.6131 1.3133 7 6 4.0751 -1.3653 2.5466 8 7 3.3830 -0.8488 3.7353 9 6 4.0823 -0.4075 4.7995 10 8 5.2942 -0.5050 4.8135 11 6 3.3769 0.1945 5.9484 12 6 2.2381 -0.4289 6.4725 13 6 1.5837 0.1228 7.5335 14 6 2.0548 1.3225 8.1023 15 6 1.3812 1.8972 9.2010 16 1 0.8473 1.2670 9.8968 17 6 1.4051 3.2865 9.3894 18 7 1.8670 4.0656 8.4478 19 14 0.7765 4.0235 10.9867 20 1 1.5721 3.4936 12.1231 21 1 0.9090 5.5017 10.9358 22 1 -0.6517 3.6609 11.1707 23 6 3.2005 1.9467 7.5707 24 6 3.8482 1.3875 6.5096 25 6 1.9139 -0.8281 3.7441 26 6 1.4284 -0.0767 2.4952 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.9537 -2.6183 1.9529 35 1 3.8530 0.4360 1.3824 36 1 3.9993 -1.0515 0.4146 37 1 5.1486 -1.2089 2.6521 38 1 3.8679 -2.4298 2.4368 39 1 1.8804 -1.3510 6.0387 40 1 0.7056 -0.3591 7.9374 41 1 1.8832 5.0267 8.5781 42 1 3.5651 2.8667 8.0032 43 1 4.7269 1.8650 6.1016 44 1 1.5340 -1.8496 3.7300 45 1 1.5610 -0.3171 4.6399 46 1 1.7362 0.9673 2.5531 47 1 0.3414 -0.1333 2.4377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649360596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:14 Heat of formation + Delta-G solvation = -74.944341 kcal Electronic energy + Delta-G solvation = -27445.301895 eV Core-core repulsion = 23785.132345 eV Total energy + Delta-G solvation = -3660.169551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.54735 -38.73774 -37.14887 -35.18459 -34.59131 -33.88558 -31.60225 -30.33935 -29.97157 -29.46805 -27.27670 -26.21147 -24.93102 -23.37682 -22.33803 -21.11763 -20.90189 -19.47659 -18.55739 -17.56710 -17.24400 -16.23537 -15.91364 -15.52487 -15.35113 -14.87836 -14.68480 -14.33014 -14.14222 -13.80101 -13.61908 -13.13291 -12.95231 -12.79917 -12.38177 -12.33791 -12.28822 -12.11584 -12.00450 -11.81067 -11.73145 -11.53407 -11.41923 -11.21142 -11.14828 -11.01735 -10.96752 -10.89570 -10.61327 -10.15721 -10.04316 -9.73836 -9.55952 -9.38566 -9.01921 -8.33046 -7.71964 -7.48070 -6.94067 -4.60351 2.30713 2.91145 2.96215 2.97785 3.00117 3.36670 3.63944 3.78487 4.06710 4.47822 4.55204 4.64275 4.76364 5.02969 5.09032 5.17340 5.21484 5.26656 5.34318 5.48363 5.55147 5.56464 5.66959 5.72270 5.78667 5.82289 5.87477 5.92034 6.01846 6.02498 6.08668 6.10889 6.15375 6.20531 6.30478 6.32844 6.76061 6.84622 6.89944 7.00262 7.09481 7.42418 7.54991 7.57335 7.73320 7.85174 7.97050 8.08175 8.42789 8.65456 8.73905 8.86376 9.98218 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.003368 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.504401 B = 8310.447274 C = 8968.152448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.152 4.152 4 C 0.140 3.860 5 O -0.560 6.560 6 C -0.160 4.160 7 C 0.108 3.892 8 N -0.618 5.618 9 C 0.580 3.420 10 O -0.563 6.563 11 C -0.269 4.269 12 C -0.062 4.062 13 C -0.228 4.228 14 C 0.126 3.874 15 C -0.451 4.451 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.784 5.784 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.168 4.168 24 C -0.048 4.048 25 C 0.090 3.910 26 C -0.162 4.162 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.373 0.627 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.285 0.715 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.119 0.881 46 H 0.080 0.920 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 -4.715 -12.456 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.210 4.210 4 C 0.099 3.901 5 O -0.367 6.367 6 C -0.198 4.198 7 C -0.015 4.015 8 N -0.353 5.353 9 C 0.374 3.626 10 O -0.443 6.443 11 C -0.273 4.273 12 C -0.080 4.080 13 C -0.248 4.248 14 C 0.123 3.877 15 C -0.480 4.480 16 H 0.100 0.900 17 C -0.146 4.146 18 N -0.409 5.409 19 Si 0.739 3.261 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.187 4.187 24 C -0.067 4.067 25 C -0.032 4.032 26 C -0.200 4.200 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.221 0.779 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.140 0.860 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.137 0.863 46 H 0.098 0.902 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.537 -4.307 -13.066 13.989 hybrid contribution -0.109 0.258 1.086 1.122 sum -2.646 -4.049 -11.979 12.919 Atomic orbital electron populations 1.21861 0.94721 1.02272 1.01551 1.20996 0.96470 0.95516 0.96690 1.21984 1.01389 0.95293 1.02297 1.21147 0.92399 0.81751 0.94770 1.86476 1.81141 1.20456 1.48612 1.22651 0.96357 1.02458 0.98374 1.21460 0.99171 0.96627 0.84228 1.48090 1.06523 1.64797 1.15859 1.18804 0.86454 0.75415 0.81965 1.90653 1.14686 1.57525 1.81402 1.18851 1.03094 1.02300 1.03068 1.20388 0.93702 0.97462 0.96494 1.20743 1.02338 1.01271 1.00419 1.17753 0.89450 0.89970 0.90479 1.19730 1.27779 0.91864 1.08583 0.90002 1.26029 0.93445 0.97481 0.97653 1.69699 1.33301 1.06165 1.31695 0.86252 0.80242 0.78007 0.81643 1.18625 1.20127 1.18797 1.21043 0.96570 1.02214 0.98885 1.20367 0.97291 0.93525 0.95524 1.22277 0.79985 1.00286 1.00693 1.22777 1.01578 1.01253 0.94415 0.92223 0.93073 0.91992 0.90853 0.92201 0.92371 0.91942 0.77851 0.90192 0.90481 0.88882 0.92271 0.88652 0.88388 0.90363 0.85969 0.88878 0.92195 0.86345 0.90161 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.60 37.16 0.32 -1.12 16 2 C -0.08 -0.80 2.52 -90.62 -0.23 -1.02 16 3 C -0.15 -1.47 8.46 37.16 0.31 -1.15 16 4 C 0.14 1.56 0.57 -90.58 -0.05 1.51 16 5 O -0.56 -6.38 12.42 -35.23 -0.44 -6.82 16 6 C -0.16 -1.85 4.57 -26.61 -0.12 -1.97 16 7 C 0.11 1.46 5.99 -3.71 -0.02 1.43 16 8 N -0.62 -9.92 2.97 -173.69 -0.52 -10.44 16 9 C 0.58 11.98 7.27 -12.42 -0.09 11.89 16 10 O -0.56 -13.23 16.42 5.29 0.09 -13.15 16 11 C -0.27 -5.93 5.21 -104.73 -0.55 -6.47 16 12 C -0.06 -1.28 7.22 -39.61 -0.29 -1.56 16 13 C -0.23 -5.13 9.73 -39.27 -0.38 -5.52 16 14 C 0.13 3.16 5.55 -106.81 -0.59 2.56 16 15 C -0.45 -11.13 9.05 -37.75 -0.34 -11.47 16 16 H 0.08 1.92 7.87 -52.49 -0.41 1.51 16 17 C 0.07 1.72 5.25 -17.31 -0.09 1.63 16 18 N -0.78 -19.01 10.86 55.56 0.60 -18.41 16 19 Si 0.91 17.47 29.57 -169.99 -5.03 12.44 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 23 C -0.17 -4.19 8.59 -39.27 -0.34 -4.53 16 24 C -0.05 -1.13 9.62 -39.61 -0.38 -1.51 16 25 C 0.09 1.25 4.80 -3.49 -0.02 1.24 16 26 C -0.16 -1.99 4.40 -26.39 -0.12 -2.10 16 27 H 0.06 0.59 6.31 -51.93 -0.33 0.26 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.57 6.38 -51.93 -0.33 0.24 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.65 6.60 -51.93 -0.34 0.30 16 34 H 0.37 3.69 5.83 45.56 0.27 3.96 16 35 H 0.08 0.99 6.43 -51.93 -0.33 0.65 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.41 7.03 -51.93 -0.36 1.05 16 38 H 0.06 0.69 7.02 -51.93 -0.36 0.32 16 39 H 0.10 1.69 6.57 -52.49 -0.35 1.34 16 40 H 0.10 2.04 8.06 -52.48 -0.42 1.61 16 41 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 42 H 0.12 3.15 6.25 -52.49 -0.33 2.82 16 43 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 44 H 0.06 0.71 7.02 -51.93 -0.36 0.35 16 45 H 0.12 1.91 4.20 -51.93 -0.22 1.69 16 46 H 0.08 1.08 6.64 -51.93 -0.34 0.74 16 47 H 0.08 0.96 6.27 -51.93 -0.33 0.63 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -27.79 356.19 -9.11 -36.90 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -6.22 Total: 12.27 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -2.97 Total: -18.17 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: 0.09 Total: -28.85 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.35 Total: -19.97 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.79 -9.11 -36.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649360596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.047 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds