Wall clock time and date at job start Tue Mar 31 2020 13:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46877 * 2 1 4 4 C 1.52994 * 109.47257 * 120.00120 * 2 1 3 5 5 O 1.42908 * 109.46183 * 65.02976 * 4 2 1 6 6 C 1.53043 * 109.46049 * 184.99859 * 4 2 1 7 7 C 1.53188 * 109.31450 * 181.37029 * 6 4 2 8 8 N 1.46933 * 108.77894 * 305.36854 * 7 6 4 9 9 C 1.34771 * 120.62994 * 233.58568 * 8 7 6 10 10 O 1.21585 * 120.00140 * 355.78733 * 9 8 7 11 11 C 1.47646 * 120.00020 * 175.78410 * 9 8 7 12 12 C 1.40009 * 119.89171 * 46.00938 * 11 9 8 13 13 C 1.36323 * 120.10468 * 179.97438 * 12 11 9 14 14 C 1.40878 * 119.89548 * 0.02562 * 13 12 11 15 15 C 1.41107 * 120.10884 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99578 * 29.37704 * 15 14 13 17 17 C 1.40222 * 120.00101 * 209.37359 * 15 14 13 18 18 N 1.30645 * 120.00258 * 10.65073 * 17 15 14 19 19 Si 1.86809 * 119.99890 * 190.65013 * 17 15 14 20 20 H 1.48498 * 109.46882 * 60.00250 * 19 17 15 21 21 H 1.48499 * 109.47030 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46840 * 300.00345 * 19 17 15 23 23 C 1.40893 * 119.79123 * 0.02562 * 14 13 12 24 24 C 1.36316 * 119.89129 * 359.97438 * 23 14 13 25 25 C 1.46927 * 118.73468 * 53.85759 * 8 7 6 26 26 C 1.53040 * 109.45145 * 305.06070 * 4 2 1 27 27 H 1.09000 * 109.46904 * 299.99491 * 1 2 3 28 28 H 1.08996 * 109.47560 * 60.00176 * 1 2 3 29 29 H 1.09003 * 109.46716 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46971 * 239.99957 * 2 1 3 31 31 H 1.09002 * 109.47177 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47154 * 300.00313 * 3 2 1 33 33 H 1.09001 * 109.47354 * 60.00192 * 3 2 1 34 34 H 0.96697 * 113.99806 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.49251 * 61.42099 * 6 4 2 36 36 H 1.09002 * 109.50109 * 301.32495 * 6 4 2 37 37 H 1.09000 * 109.58866 * 185.58339 * 7 6 4 38 38 H 1.08999 * 109.58574 * 65.15646 * 7 6 4 39 39 H 1.08001 * 119.94677 * 0.28093 * 12 11 9 40 40 H 1.08006 * 120.05089 * 180.02562 * 13 12 11 41 41 H 0.97007 * 119.99950 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.05809 * 179.97438 * 23 14 13 43 43 H 1.08007 * 119.94796 * 180.02562 * 24 23 14 44 44 H 1.08994 * 109.59011 * 65.92958 * 25 8 7 45 45 H 1.09004 * 109.57988 * 186.35974 * 25 8 7 46 46 H 1.08996 * 109.49573 * 298.57487 * 26 4 2 47 47 H 1.08997 * 109.49590 * 58.67121 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6625 -2.0983 1.1914 6 6 3.5653 -0.6131 1.3133 7 6 4.0751 -1.3653 2.5466 8 7 3.3830 -0.8488 3.7353 9 6 4.0823 -0.4075 4.7995 10 8 5.2942 -0.5050 4.8135 11 6 3.3769 0.1945 5.9484 12 6 2.2381 -0.4289 6.4725 13 6 1.5837 0.1228 7.5335 14 6 2.0548 1.3225 8.1023 15 6 1.3812 1.8972 9.2010 16 1 0.8473 1.2670 9.8968 17 6 1.4051 3.2865 9.3894 18 7 1.8670 4.0656 8.4478 19 14 0.7765 4.0235 10.9867 20 1 1.5721 3.4936 12.1231 21 1 0.9090 5.5017 10.9358 22 1 -0.6517 3.6609 11.1707 23 6 3.2005 1.9467 7.5707 24 6 3.8482 1.3875 6.5096 25 6 1.9139 -0.8281 3.7441 26 6 1.4284 -0.0767 2.4952 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.9537 -2.6183 1.9529 35 1 3.8530 0.4360 1.3824 36 1 3.9993 -1.0515 0.4146 37 1 5.1486 -1.2089 2.6521 38 1 3.8679 -2.4298 2.4368 39 1 1.8804 -1.3510 6.0387 40 1 0.7056 -0.3591 7.9374 41 1 1.8832 5.0267 8.5781 42 1 3.5651 2.8667 8.0032 43 1 4.7269 1.8650 6.1016 44 1 1.5340 -1.8496 3.7300 45 1 1.5610 -0.3171 4.6399 46 1 1.7362 0.9673 2.5531 47 1 0.3414 -0.1333 2.4377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649360596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:12 Heat of formation + Delta-G solvation = -90.388602 kcal Electronic energy + Delta-G solvation = -27445.971609 eV Core-core repulsion = 23785.132345 eV Total energy + Delta-G solvation = -3660.839264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.75157 -40.13871 -38.86400 -36.47644 -35.64830 -35.44357 -32.85091 -31.83259 -31.41249 -31.06985 -28.17450 -27.73976 -26.17209 -24.50530 -23.75901 -22.83830 -22.26885 -20.73559 -19.65601 -19.35019 -18.49793 -17.58299 -17.19300 -17.09610 -16.52672 -16.11069 -15.84388 -15.72097 -15.37362 -15.30003 -14.83294 -14.55333 -14.39194 -14.04499 -13.77922 -13.73395 -13.47713 -13.32827 -13.22786 -13.02850 -12.96977 -12.80808 -12.79557 -12.57140 -12.47102 -12.28333 -12.03888 -11.83112 -11.79590 -11.75633 -11.39279 -11.14250 -11.07050 -10.77928 -10.56750 -9.68825 -9.52006 -9.27511 -8.69732 -6.46676 0.55191 1.10478 1.39641 1.45350 1.51800 1.88471 2.11729 2.18981 2.72548 3.22663 3.61229 3.63079 3.65874 3.80878 3.91268 4.07711 4.20971 4.22986 4.28951 4.35297 4.36878 4.39882 4.46643 4.63219 4.79399 4.82355 4.85741 4.92058 4.93508 4.97935 4.99603 5.04769 5.06364 5.13134 5.17499 5.19636 5.27122 5.27693 5.47579 5.49992 5.59980 5.63778 5.76515 5.97258 6.02061 6.22265 6.43505 6.58410 6.76839 6.81868 6.90530 7.27715 8.24937 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.003368 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.504401 B = 8310.447274 C = 8968.152448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.151 4.151 4 C 0.147 3.853 5 O -0.561 6.561 6 C -0.153 4.153 7 C 0.105 3.895 8 N -0.606 5.606 9 C 0.576 3.424 10 O -0.600 6.600 11 C -0.273 4.273 12 C -0.047 4.047 13 C -0.236 4.236 14 C 0.100 3.900 15 C -0.483 4.483 16 H 0.087 0.913 17 C 0.034 3.966 18 N -0.817 5.817 19 Si 0.986 3.014 20 H -0.260 1.260 21 H -0.269 1.269 22 H -0.255 1.255 23 C -0.188 4.188 24 C -0.060 4.060 25 C 0.087 3.913 26 C -0.157 4.157 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.380 0.620 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.292 0.708 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 -6.043 -13.629 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C -0.209 4.209 4 C 0.106 3.894 5 O -0.370 6.370 6 C -0.192 4.192 7 C -0.017 4.017 8 N -0.338 5.338 9 C 0.369 3.631 10 O -0.483 6.483 11 C -0.277 4.277 12 C -0.065 4.065 13 C -0.256 4.256 14 C 0.097 3.903 15 C -0.511 4.511 16 H 0.105 0.895 17 C -0.182 4.182 18 N -0.441 5.441 19 Si 0.807 3.193 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.179 1.179 23 C -0.207 4.207 24 C -0.080 4.080 25 C -0.035 4.035 26 C -0.195 4.195 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.150 0.850 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.083 0.917 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.150 -5.659 -14.279 15.911 hybrid contribution 0.397 0.601 1.311 1.496 sum -3.752 -5.058 -12.969 14.417 Atomic orbital electron populations 1.21837 0.94292 1.02076 1.01979 1.21002 0.96804 0.95497 0.96230 1.21974 1.01316 0.95171 1.02402 1.21075 0.91803 0.81912 0.94627 1.86490 1.81146 1.20232 1.49096 1.22612 0.96817 1.01686 0.98043 1.21676 0.97979 0.98433 0.83610 1.48052 1.07506 1.63002 1.15251 1.18599 0.85983 0.75764 0.82757 1.90633 1.16055 1.59325 1.82245 1.19104 1.03397 1.01580 1.03616 1.20656 0.92480 0.98098 0.95272 1.20984 1.03085 1.00718 1.00790 1.18091 0.89673 0.91255 0.91272 1.20028 1.28868 0.92964 1.09246 0.89451 1.26888 0.93198 0.97411 1.00742 1.69767 1.34102 1.06727 1.33539 0.85174 0.79811 0.77308 0.77037 1.18471 1.19359 1.17906 1.20939 0.97573 1.02244 0.99981 1.20446 0.97302 0.94594 0.95623 1.22423 0.78362 1.02138 1.00596 1.22735 1.02335 1.00224 0.94225 0.92594 0.91944 0.92415 0.90330 0.92335 0.91077 0.93054 0.77016 0.91283 0.88561 0.90772 0.89393 0.85030 0.86645 0.89755 0.87804 0.89393 0.88945 0.88503 0.91723 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.60 71.98 0.62 -1.84 16 2 C -0.08 -1.37 2.52 -10.80 -0.03 -1.39 16 3 C -0.15 -2.65 8.46 71.98 0.61 -2.05 16 4 C 0.15 2.88 0.57 -10.77 -0.01 2.87 16 5 O -0.56 -10.72 12.42 -148.98 -1.85 -12.57 16 6 C -0.15 -3.19 4.57 30.67 0.14 -3.05 16 7 C 0.10 2.61 5.99 86.36 0.52 3.13 16 8 N -0.61 -18.52 2.97 -821.69 -2.44 -20.96 16 9 C 0.58 23.71 7.27 86.73 0.63 24.34 16 10 O -0.60 -28.57 16.42 -3.98 -0.07 -28.63 16 11 C -0.27 -12.12 5.21 -19.93 -0.10 -12.23 16 12 C -0.05 -1.88 7.22 22.25 0.16 -1.72 16 13 C -0.24 -10.58 9.73 22.47 0.22 -10.37 16 14 C 0.10 5.12 5.55 -21.28 -0.12 5.00 16 15 C -0.48 -24.31 9.05 23.46 0.21 -24.09 16 16 H 0.09 4.14 7.87 -2.91 -0.02 4.11 16 17 C 0.03 1.63 5.25 85.35 0.45 2.07 16 18 N -0.82 -40.79 10.86 21.87 0.24 -40.55 16 19 Si 0.99 35.81 29.57 68.60 2.03 37.84 16 20 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 21 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 22 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 23 C -0.19 -9.84 8.59 22.47 0.19 -9.65 16 24 C -0.06 -2.98 9.62 22.25 0.21 -2.77 16 25 C 0.09 2.20 4.80 86.51 0.42 2.61 16 26 C -0.16 -3.53 4.40 30.82 0.14 -3.40 16 27 H 0.06 0.98 6.31 -2.39 -0.02 0.97 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.04 7.82 -2.39 -0.02 1.02 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.03 6.38 -2.39 -0.02 1.02 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.05 1.01 6.60 -2.39 -0.02 1.00 16 34 H 0.38 5.92 5.83 -74.06 -0.43 5.48 16 35 H 0.07 1.62 6.43 -2.38 -0.02 1.60 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 2.19 7.03 -2.39 -0.02 2.17 16 38 H 0.09 1.73 7.02 -2.39 -0.02 1.72 16 39 H 0.13 4.30 6.57 -2.91 -0.02 4.28 16 40 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.29 13.20 8.29 -92.70 -0.77 12.43 16 42 H 0.10 5.71 6.25 -2.91 -0.02 5.69 16 43 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 44 H 0.09 1.81 7.02 -2.39 -0.02 1.79 16 45 H 0.10 2.95 4.20 -2.39 -0.01 2.94 16 46 H 0.06 1.68 6.64 -2.39 -0.02 1.67 16 47 H 0.10 1.96 6.27 -2.39 -0.01 1.94 16 Total: -1.00 -61.84 356.19 2.74 -59.10 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.56 Total: 38.29 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 4.26 Total: -32.52 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -2.20 Total: -61.50 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.92 Total: -41.21 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Total: -61.84 2.74 -59.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649360596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.290 kcal (2) G-P(sol) polarization free energy of solvation -61.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds