Wall clock time and date at job start Tue Mar 31 2020 12:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.53006 * 109.46908 * 120.00088 * 2 1 3 5 5 N 1.46501 * 109.46857 * 176.91187 * 4 2 1 6 6 C 1.46500 * 120.00176 * 295.92858 * 5 4 2 7 7 C 1.50699 * 109.47476 * 275.00530 * 6 5 4 8 8 H 1.08004 * 119.99460 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00296 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00033 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00176 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47351 * 90.00228 * 11 9 7 13 13 H 1.48504 * 109.47282 * 209.99927 * 11 9 7 14 14 H 1.48501 * 109.47120 * 329.99970 * 11 9 7 15 15 S 1.65599 * 120.00245 * 115.93030 * 5 4 2 16 16 O 1.42097 * 104.27912 * 158.46251 * 15 5 4 17 17 O 1.42101 * 104.27681 * 30.60780 * 15 5 4 18 18 C 1.81402 * 104.45119 * 274.53990 * 15 5 4 19 19 C 1.52995 * 109.47231 * 175.00956 * 18 15 5 20 20 C 1.52993 * 109.47212 * 64.99879 * 19 18 15 21 21 C 1.53008 * 109.47174 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.46896 * 299.99649 * 21 20 19 23 23 C 1.53007 * 109.46937 * 60.00035 * 22 21 20 24 24 C 1.52995 * 109.47337 * 299.99965 * 23 22 21 25 25 H 1.08995 * 109.47204 * 299.99607 * 1 2 3 26 26 H 1.08997 * 109.47445 * 60.00168 * 1 2 3 27 27 H 1.09006 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46918 * 239.99818 * 2 1 3 29 29 H 1.09000 * 109.46804 * 305.60673 * 3 2 1 30 30 H 1.09002 * 109.47330 * 65.60074 * 3 2 1 31 31 H 1.08995 * 109.47459 * 185.60272 * 3 2 1 32 32 H 1.08996 * 109.47507 * 56.91468 * 4 2 1 33 33 H 1.09003 * 109.47045 * 296.90959 * 4 2 1 34 34 H 1.09003 * 109.47065 * 35.00243 * 6 5 4 35 35 H 1.08995 * 109.47265 * 154.99623 * 6 5 4 36 36 H 0.97006 * 120.00256 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47106 * 55.00372 * 18 15 5 38 38 H 1.09000 * 109.46903 * 295.01236 * 18 15 5 39 39 H 1.09000 * 109.46942 * 304.99605 * 19 18 15 40 40 H 1.09007 * 109.47114 * 299.99614 * 20 19 18 41 41 H 1.09000 * 109.47391 * 60.00001 * 20 19 18 42 42 H 1.08999 * 109.46972 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.47163 * 59.99614 * 21 20 19 44 44 H 1.08999 * 109.47673 * 300.00157 * 22 21 20 45 45 H 1.09003 * 109.47513 * 179.97438 * 22 21 20 46 46 H 1.09003 * 109.47349 * 179.97438 * 23 22 21 47 47 H 1.09000 * 109.46926 * 60.00394 * 23 22 21 48 48 H 1.09000 * 109.46942 * 300.00179 * 24 23 22 49 49 H 1.08996 * 109.47248 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5031 -0.7861 1.2127 6 6 4.1765 -1.5467 0.1571 7 6 4.2665 -2.9957 0.5613 8 1 3.8628 -3.3177 1.5099 9 6 4.8641 -3.9102 -0.2797 10 7 5.3551 -3.5181 -1.4351 11 14 4.9763 -5.7061 0.2216 12 1 3.7701 -6.4294 -0.2548 13 1 6.1889 -6.3140 -0.3829 14 1 5.0593 -5.8027 1.7012 15 16 4.3959 0.0004 2.3644 16 8 5.6522 -0.6631 2.3476 17 8 3.5716 -0.0209 3.5218 18 6 4.5610 1.6925 1.7318 19 6 5.2682 2.5602 2.7748 20 6 6.7006 2.0589 2.9686 21 6 7.4077 2.9263 4.0122 22 6 7.4362 4.3790 3.5330 23 6 6.0037 4.8803 3.3392 24 6 5.2967 4.0130 2.2958 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.5970 1.9844 -0.8355 30 1 1.7609 1.9266 0.9359 31 1 3.1253 1.4441 -0.1003 32 1 1.6322 -1.7317 1.2774 33 1 1.7225 -0.1765 2.1384 34 1 3.6089 -1.4627 -0.7698 35 1 5.1798 -1.1485 0.0060 36 1 5.7759 -4.1615 -2.0267 37 1 3.5717 2.1026 1.5284 38 1 5.1456 1.6810 0.8119 39 1 4.7312 2.5006 3.7214 40 1 6.6803 1.0240 3.3104 41 1 7.2377 2.1185 2.0220 42 1 8.4284 2.5694 4.1499 43 1 6.8705 2.8663 4.9587 44 1 7.9734 4.4390 2.5865 45 1 7.9395 4.9971 4.2766 46 1 6.0239 5.9155 2.9982 47 1 5.4666 4.8204 4.2857 48 1 5.8338 4.0729 1.3492 49 1 4.2763 4.3704 2.1573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043419485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:35 Heat of formation + Delta-G solvation = -109.133469 kcal Electronic energy + Delta-G solvation = -26864.620190 eV Core-core repulsion = 23338.412038 eV Total energy + Delta-G solvation = -3526.208151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.78746 -37.22115 -36.43252 -35.24722 -33.73395 -32.85913 -32.04892 -30.83321 -27.58925 -27.40937 -26.35906 -24.92172 -22.77091 -22.49742 -21.52808 -19.85732 -19.72863 -18.08368 -17.01533 -16.47649 -15.87373 -15.55636 -15.45987 -14.83595 -14.55858 -14.37202 -14.29982 -14.11820 -13.86468 -13.59806 -12.88086 -12.53657 -12.45712 -12.36646 -12.33076 -12.15774 -12.05515 -11.77660 -11.61155 -11.38162 -11.23020 -11.21097 -11.16390 -11.09174 -11.02705 -10.72085 -10.64299 -10.60384 -10.54871 -10.48006 -10.23870 -10.16543 -9.96251 -9.73639 -9.57414 -8.39587 -7.94815 -6.02041 -4.04610 0.88301 3.34115 3.38284 3.40653 3.48054 4.33527 4.46705 4.48405 4.60100 4.64711 4.74585 5.03980 5.10196 5.12769 5.15460 5.21506 5.30795 5.32492 5.33627 5.37173 5.43242 5.48110 5.58352 5.67705 5.73761 5.75737 5.78980 5.93029 5.94042 5.98809 6.02089 6.03239 6.06442 6.09974 6.17337 6.24128 6.27072 6.28870 6.38986 6.44814 6.59414 6.75106 7.27537 7.44025 7.65701 7.95935 8.26720 8.97541 9.59866 11.06635 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.004796 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.527135 B = 5836.854696 C = 7162.976138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.160 4.160 4 C 0.130 3.870 5 N -0.983 5.983 6 C 0.256 3.744 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.062 3.938 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 S 2.602 3.398 16 O -0.937 6.937 17 O -0.976 6.976 18 C -0.651 4.651 19 C -0.072 4.072 20 C -0.145 4.145 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.105 4.105 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 16.644 4.991 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.217 4.217 4 C 0.003 3.997 5 N -0.821 5.821 6 C 0.134 3.866 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.537 5.537 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.197 1.197 15 S 2.694 3.306 16 O -0.927 6.927 17 O -0.966 6.966 18 C -0.778 4.778 19 C -0.091 4.091 20 C -0.182 4.182 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.565 16.190 5.608 17.325 hybrid contribution -0.046 -0.567 -0.524 0.773 sum -2.610 15.623 5.085 16.636 Atomic orbital electron populations 1.21765 0.95240 1.01886 1.01218 1.21537 0.95295 0.96123 1.00851 1.22172 1.01817 0.96544 1.01127 1.21222 0.80380 1.01464 0.96602 1.57416 1.13892 1.63032 1.47809 1.19055 0.92040 0.90471 0.85027 1.21472 1.37721 0.92834 1.04120 0.92214 1.24901 0.95152 0.99055 0.94888 1.69916 1.39255 1.34779 1.09773 0.86548 0.77457 0.84760 0.79003 1.20693 1.21130 1.19734 1.05236 0.74544 0.76305 0.74562 1.93615 1.42782 1.70213 1.86063 1.93509 1.68743 1.87032 1.47340 1.31238 1.09994 1.25830 1.10701 1.20846 0.95904 0.95414 0.96968 1.22018 0.94956 1.00446 1.00801 1.21515 1.00767 0.94789 0.98525 1.21564 0.96727 0.96224 1.01317 1.21569 0.96131 0.98783 0.99424 1.21528 1.00667 0.93310 0.98857 0.92977 0.92912 0.92399 0.89606 0.92640 0.93076 0.91899 0.90524 0.90723 0.94494 0.94302 0.92805 0.84757 0.85078 0.90136 0.90377 0.90614 0.91503 0.91824 0.91876 0.92135 0.91993 0.91895 0.91525 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 2 C -0.12 -1.71 2.91 -90.62 -0.26 -1.97 16 3 C -0.16 -1.99 7.64 37.16 0.28 -1.70 16 4 C 0.13 2.24 5.20 -4.04 -0.02 2.22 16 5 N -0.98 -19.94 2.28 -115.66 -0.26 -20.20 16 6 C 0.26 6.27 4.92 -5.19 -0.03 6.24 16 7 C -0.52 -14.64 9.38 -34.44 -0.32 -14.96 16 8 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 11 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 S 2.60 50.29 4.87 -107.50 -0.52 49.77 16 16 O -0.94 -21.75 14.93 -57.54 -0.86 -22.61 16 17 O -0.98 -20.29 16.69 -57.54 -0.96 -21.25 16 18 C -0.65 -9.06 4.12 37.16 0.15 -8.91 16 19 C -0.07 -0.91 2.19 -90.63 -0.20 -1.11 16 20 C -0.14 -1.95 4.91 -26.73 -0.13 -2.08 16 21 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 22 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 23 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 24 C -0.11 -1.08 5.20 -26.73 -0.14 -1.22 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.40 6.72 -51.93 -0.35 1.06 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.57 7.30 -51.93 -0.38 0.19 16 31 H 0.06 0.81 5.55 -51.93 -0.29 0.52 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.07 1.19 6.94 -51.93 -0.36 0.83 16 34 H 0.04 0.91 6.60 -51.93 -0.34 0.57 16 35 H 0.04 1.01 7.47 -51.93 -0.39 0.62 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.13 1.60 4.95 -51.92 -0.26 1.34 16 38 H 0.13 1.72 8.06 -51.92 -0.42 1.30 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.23 5.85 -51.93 -0.30 0.93 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -32.55 379.49 -11.04 -43.59 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.97 Total: 0.58 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -0.90 Total: -27.19 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.47 Total: -45.59 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.82 Total: -43.86 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 50.29 SS G_CDS: -0.52 Total: 49.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.55 -11.04 -43.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.547 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds