Wall clock time and date at job start Tue Mar 31 2020 12:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.53006 * 109.46908 * 120.00088 * 2 1 3 5 5 N 1.46501 * 109.46857 * 176.91187 * 4 2 1 6 6 C 1.46500 * 120.00176 * 295.92858 * 5 4 2 7 7 C 1.50699 * 109.47476 * 275.00530 * 6 5 4 8 8 H 1.08004 * 119.99460 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00296 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00033 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00176 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47351 * 90.00228 * 11 9 7 13 13 H 1.48504 * 109.47282 * 209.99927 * 11 9 7 14 14 H 1.48501 * 109.47120 * 329.99970 * 11 9 7 15 15 S 1.65599 * 120.00245 * 115.93030 * 5 4 2 16 16 O 1.42097 * 104.27912 * 158.46251 * 15 5 4 17 17 O 1.42101 * 104.27681 * 30.60780 * 15 5 4 18 18 C 1.81402 * 104.45119 * 274.53990 * 15 5 4 19 19 C 1.52995 * 109.47231 * 175.00956 * 18 15 5 20 20 C 1.52993 * 109.47212 * 64.99879 * 19 18 15 21 21 C 1.53008 * 109.47174 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.46896 * 299.99649 * 21 20 19 23 23 C 1.53007 * 109.46937 * 60.00035 * 22 21 20 24 24 C 1.52995 * 109.47337 * 299.99965 * 23 22 21 25 25 H 1.08995 * 109.47204 * 299.99607 * 1 2 3 26 26 H 1.08997 * 109.47445 * 60.00168 * 1 2 3 27 27 H 1.09006 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46918 * 239.99818 * 2 1 3 29 29 H 1.09000 * 109.46804 * 305.60673 * 3 2 1 30 30 H 1.09002 * 109.47330 * 65.60074 * 3 2 1 31 31 H 1.08995 * 109.47459 * 185.60272 * 3 2 1 32 32 H 1.08996 * 109.47507 * 56.91468 * 4 2 1 33 33 H 1.09003 * 109.47045 * 296.90959 * 4 2 1 34 34 H 1.09003 * 109.47065 * 35.00243 * 6 5 4 35 35 H 1.08995 * 109.47265 * 154.99623 * 6 5 4 36 36 H 0.97006 * 120.00256 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47106 * 55.00372 * 18 15 5 38 38 H 1.09000 * 109.46903 * 295.01236 * 18 15 5 39 39 H 1.09000 * 109.46942 * 304.99605 * 19 18 15 40 40 H 1.09007 * 109.47114 * 299.99614 * 20 19 18 41 41 H 1.09000 * 109.47391 * 60.00001 * 20 19 18 42 42 H 1.08999 * 109.46972 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.47163 * 59.99614 * 21 20 19 44 44 H 1.08999 * 109.47673 * 300.00157 * 22 21 20 45 45 H 1.09003 * 109.47513 * 179.97438 * 22 21 20 46 46 H 1.09003 * 109.47349 * 179.97438 * 23 22 21 47 47 H 1.09000 * 109.46926 * 60.00394 * 23 22 21 48 48 H 1.09000 * 109.46942 * 300.00179 * 24 23 22 49 49 H 1.08996 * 109.47248 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5031 -0.7861 1.2127 6 6 4.1765 -1.5467 0.1571 7 6 4.2665 -2.9957 0.5613 8 1 3.8628 -3.3177 1.5099 9 6 4.8641 -3.9102 -0.2797 10 7 5.3551 -3.5181 -1.4351 11 14 4.9763 -5.7061 0.2216 12 1 3.7701 -6.4294 -0.2548 13 1 6.1889 -6.3140 -0.3829 14 1 5.0593 -5.8027 1.7012 15 16 4.3959 0.0004 2.3644 16 8 5.6522 -0.6631 2.3476 17 8 3.5716 -0.0209 3.5218 18 6 4.5610 1.6925 1.7318 19 6 5.2682 2.5602 2.7748 20 6 6.7006 2.0589 2.9686 21 6 7.4077 2.9263 4.0122 22 6 7.4362 4.3790 3.5330 23 6 6.0037 4.8803 3.3392 24 6 5.2967 4.0130 2.2958 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.5970 1.9844 -0.8355 30 1 1.7609 1.9266 0.9359 31 1 3.1253 1.4441 -0.1003 32 1 1.6322 -1.7317 1.2774 33 1 1.7225 -0.1765 2.1384 34 1 3.6089 -1.4627 -0.7698 35 1 5.1798 -1.1485 0.0060 36 1 5.7759 -4.1615 -2.0267 37 1 3.5717 2.1026 1.5284 38 1 5.1456 1.6810 0.8119 39 1 4.7312 2.5006 3.7214 40 1 6.6803 1.0240 3.3104 41 1 7.2377 2.1185 2.0220 42 1 8.4284 2.5694 4.1499 43 1 6.8705 2.8663 4.9587 44 1 7.9734 4.4390 2.5865 45 1 7.9395 4.9971 4.2766 46 1 6.0239 5.9155 2.9982 47 1 5.4666 4.8204 4.2857 48 1 5.8338 4.0729 1.3492 49 1 4.2763 4.3704 2.1573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:34 Heat of formation + Delta-G solvation = -128.684271 kcal Electronic energy + Delta-G solvation = -26865.467976 eV Core-core repulsion = 23338.412038 eV Total energy + Delta-G solvation = -3527.055937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.69207 -38.62217 -38.08247 -36.89102 -35.40847 -34.02288 -33.73517 -31.67643 -29.31938 -28.59101 -27.37492 -26.48801 -24.39748 -23.57177 -22.48712 -20.97900 -20.73435 -19.68740 -18.58516 -18.47121 -17.42644 -17.13054 -16.52922 -16.41205 -15.75904 -15.71971 -15.40376 -15.15354 -15.00137 -14.80941 -14.32776 -13.92588 -13.78625 -13.63716 -13.45439 -13.36364 -13.17280 -13.10608 -12.95270 -12.90156 -12.89797 -12.75318 -12.49647 -12.31167 -12.28727 -12.07528 -12.03976 -12.00442 -11.88505 -11.62667 -11.56876 -11.38608 -11.33436 -11.03843 -10.81161 -10.55973 -9.63656 -8.19225 -6.29464 -0.62479 1.36069 1.38417 1.48954 1.83815 2.40652 2.98780 3.11237 3.21743 3.44179 3.62785 3.75083 3.87936 4.07974 4.09980 4.14830 4.24016 4.29761 4.37468 4.40065 4.42566 4.55275 4.61410 4.67596 4.71912 4.74611 4.82147 4.86418 4.96632 5.00810 5.08611 5.13229 5.13424 5.19057 5.23081 5.24425 5.26824 5.34734 5.36283 5.38678 5.41335 5.50134 5.56115 5.62476 5.75036 5.98425 6.15708 6.77805 7.38239 8.87964 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.004796 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.527135 B = 5836.854696 C = 7162.976138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C -0.163 4.163 4 C 0.122 3.878 5 N -0.991 5.991 6 C 0.274 3.726 7 C -0.544 4.544 8 H 0.044 0.956 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.951 3.049 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.278 1.278 15 S 2.588 3.412 16 O -0.989 6.989 17 O -0.999 6.999 18 C -0.613 4.613 19 C -0.076 4.076 20 C -0.153 4.153 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.102 4.102 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.033 0.967 35 H 0.018 0.982 36 H 0.267 0.733 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 19.364 4.895 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.134 4.134 3 C -0.219 4.219 4 C -0.003 4.003 5 N -0.828 5.828 6 C 0.150 3.850 7 C -0.584 4.584 8 H 0.062 0.938 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.776 3.224 12 H -0.191 1.191 13 H -0.202 1.202 14 H -0.203 1.203 15 S 2.687 3.313 16 O -0.979 6.979 17 O -0.989 6.989 18 C -0.746 4.746 19 C -0.096 4.096 20 C -0.191 4.191 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.141 4.141 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.529 18.847 5.534 19.957 hybrid contribution 0.258 -1.345 -0.443 1.440 sum -3.272 17.502 5.091 18.518 Atomic orbital electron populations 1.21745 0.93030 1.02016 1.02898 1.21466 0.97085 0.97029 0.97842 1.22208 1.01474 0.95110 1.03144 1.21446 0.78717 1.01168 0.99013 1.57243 1.15145 1.64002 1.46393 1.18557 0.91264 0.89216 0.85941 1.21805 1.37851 0.95100 1.03595 0.93773 1.25658 0.94839 1.03051 0.94961 1.69994 1.39728 1.36122 1.10480 0.85667 0.78249 0.80253 0.78219 1.19067 1.20183 1.20346 1.05340 0.73203 0.78449 0.74262 1.93551 1.44595 1.73148 1.86638 1.93466 1.68789 1.88182 1.48487 1.30912 1.12434 1.20010 1.11240 1.21009 0.94954 0.97059 0.96619 1.22079 0.96195 0.99262 1.01573 1.21546 1.00500 0.95854 0.97830 1.21571 0.97472 0.94768 1.01834 1.21596 0.95481 0.99514 0.99259 1.21556 1.02186 0.90934 0.99405 0.91331 0.91123 0.93162 0.92197 0.90495 0.91116 0.92639 0.92657 0.89153 0.94883 0.96406 0.92452 0.81743 0.83738 0.89978 0.93660 0.90657 0.91411 0.91646 0.91690 0.90546 0.89944 0.91584 0.90985 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 2 C -0.11 -3.20 2.91 -10.79 -0.03 -3.23 16 3 C -0.16 -3.59 7.64 71.98 0.55 -3.04 16 4 C 0.12 4.28 5.20 86.38 0.45 4.73 16 5 N -0.99 -41.47 2.28 -519.84 -1.19 -42.65 16 6 C 0.27 14.02 4.92 85.63 0.42 14.44 16 7 C -0.54 -31.81 9.38 25.60 0.24 -31.57 16 8 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 9 C 0.01 0.82 5.46 84.65 0.46 1.28 16 10 N -0.92 -54.87 13.29 21.44 0.28 -54.59 16 11 Si 0.95 45.97 29.54 68.60 2.03 48.00 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 15 S 2.59 102.76 4.87 -56.49 -0.28 102.48 16 16 O -0.99 -48.66 14.93 -127.65 -1.91 -50.56 16 17 O -1.00 -42.33 16.69 -127.65 -2.13 -44.46 16 18 C -0.61 -16.11 4.12 71.98 0.30 -15.82 16 19 C -0.08 -1.80 2.19 -10.80 -0.02 -1.82 16 20 C -0.15 -4.11 4.91 30.59 0.15 -3.96 16 21 C -0.12 -2.51 5.92 30.60 0.18 -2.33 16 22 C -0.12 -1.88 5.92 30.60 0.18 -1.70 16 23 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 24 C -0.10 -1.71 5.20 30.59 0.16 -1.55 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.06 1.99 6.72 -2.39 -0.02 1.97 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.28 7.30 -2.39 -0.02 1.27 16 31 H 0.05 1.30 5.55 -2.39 -0.01 1.28 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.83 6.94 -2.39 -0.02 2.82 16 34 H 0.03 1.70 6.60 -2.39 -0.02 1.69 16 35 H 0.02 0.98 7.47 -2.39 -0.02 0.97 16 36 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 37 H 0.16 3.37 4.95 -2.39 -0.01 3.36 16 38 H 0.14 3.56 8.06 -2.39 -0.02 3.54 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.50 5.85 -2.38 -0.01 1.49 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.56 379.49 1.58 -71.98 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.89 Total: 18.32 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 3.88 Total: -48.51 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -0.90 Total: -97.24 kcal Atomic # 8 Polarization: -90.99 SS G_CDS: -4.04 Total: -95.03 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 102.76 SS G_CDS: -0.28 Total: 102.48 kcal Total: -73.56 1.58 -71.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.704 kcal (2) G-P(sol) polarization free energy of solvation -73.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds