Wall clock time and date at job start Tue Mar 31 2020 11:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47194 * 2 1 4 4 C 1.53000 * 109.46916 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47105 * 179.97438 * 4 3 2 6 6 H 1.09005 * 110.05571 * 53.58116 * 5 4 3 7 7 C 1.54259 * 110.03380 * 292.16839 * 5 4 3 8 8 C 1.54888 * 104.19704 * 217.10323 * 7 5 4 9 9 C 1.54897 * 102.74895 * 37.93903 * 8 7 5 10 10 C 1.53876 * 110.03186 * 174.99806 * 5 4 3 11 11 H 1.09000 * 110.07085 * 238.59132 * 10 5 4 12 12 N 1.46499 * 110.03294 * 0.02562 * 10 5 4 13 13 S 1.65597 * 119.99926 * 213.89735 * 12 10 5 14 14 O 1.42100 * 104.27735 * 180.79571 * 13 12 10 15 15 O 1.42101 * 104.27674 * 308.65500 * 13 12 10 16 16 C 1.81402 * 104.45066 * 64.71997 * 13 12 10 17 17 C 1.53002 * 109.47127 * 180.02562 * 16 13 12 18 18 C 1.52995 * 109.47263 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.47551 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99614 * 359.97438 * 19 18 17 21 21 C 1.37870 * 120.00253 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99972 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47446 * 89.99781 * 23 21 19 25 25 H 1.48502 * 109.47323 * 209.99816 * 23 21 19 26 26 H 1.48504 * 109.47161 * 330.00039 * 23 21 19 27 27 H 1.08995 * 109.47458 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47052 * 300.00429 * 1 2 3 29 29 H 1.09007 * 109.46838 * 59.99773 * 1 2 3 30 30 H 1.09001 * 109.46721 * 239.99985 * 2 1 3 31 31 H 1.08993 * 109.47047 * 120.00154 * 2 1 3 32 32 H 1.08997 * 109.47111 * 59.99606 * 3 2 1 33 33 H 1.09009 * 109.46901 * 299.99820 * 3 2 1 34 34 H 1.09001 * 109.47022 * 59.99971 * 4 3 2 35 35 H 1.08993 * 109.47025 * 299.99970 * 4 3 2 36 36 H 1.08999 * 110.49223 * 98.42630 * 7 5 4 37 37 H 1.08998 * 110.49006 * 335.77820 * 7 5 4 38 38 H 1.09004 * 110.75613 * 279.62702 * 8 7 5 39 39 H 1.08995 * 110.91801 * 156.32793 * 8 7 5 40 40 H 1.08993 * 110.48883 * 203.38114 * 9 8 7 41 41 H 1.09008 * 110.59337 * 80.79167 * 9 8 7 42 42 H 0.97001 * 119.99790 * 33.61524 * 12 10 5 43 43 H 1.08990 * 109.47555 * 300.00369 * 16 13 12 44 44 H 1.09004 * 109.46533 * 60.00490 * 16 13 12 45 45 H 1.09004 * 109.47124 * 300.00530 * 17 16 13 46 46 H 1.08998 * 109.47317 * 60.00145 * 17 16 13 47 47 H 1.09004 * 109.47140 * 300.00100 * 18 17 16 48 48 H 1.09006 * 109.47528 * 59.99646 * 18 17 16 49 49 H 0.97003 * 119.99598 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 1 3.6320 3.4402 0.8227 7 6 3.7402 3.5650 -1.3435 8 6 4.9684 4.4620 -1.6366 9 6 6.1521 3.5916 -1.1463 10 6 5.6137 2.9017 0.1241 11 1 5.9105 3.4648 1.0090 12 7 6.1256 1.5316 0.2059 13 16 7.4606 1.2001 1.1280 14 8 7.6691 -0.1947 0.9541 15 8 8.4292 2.1453 0.6947 16 6 6.9373 1.5587 2.8275 17 6 8.0985 1.2885 3.7864 18 6 7.6571 1.5903 5.2198 19 6 8.8010 1.3248 6.1643 20 1 9.7481 0.9753 5.7805 21 6 8.6385 1.5280 7.5182 22 7 7.4853 1.9541 7.9855 23 14 10.0567 1.1996 8.6888 24 1 10.8610 2.4372 8.8516 25 1 9.5218 0.7797 10.0090 26 1 10.9147 0.1207 8.1365 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9287 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 2.8395 4.1713 -1.2467 37 1 3.6165 2.8192 -2.1286 38 1 4.9118 5.3916 -1.0702 39 1 5.0552 4.6663 -2.7037 40 1 7.0116 4.2172 -0.9055 41 1 6.4201 2.8498 -1.8987 42 1 5.6801 0.8178 -0.2768 43 1 6.6400 2.6045 2.9031 44 1 6.0931 0.9210 3.0898 45 1 8.3963 0.2426 3.7108 46 1 8.9425 1.9264 3.5239 47 1 7.3590 2.6360 5.2957 48 1 6.8132 0.9521 5.4822 49 1 7.3710 2.0967 8.9381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068912782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:26 Heat of formation + Delta-G solvation = -121.321711 kcal Electronic energy + Delta-G solvation = -25375.670788 eV Core-core repulsion = 21848.934115 eV Total energy + Delta-G solvation = -3526.736673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.52307 -36.84028 -35.72334 -35.60869 -34.66754 -33.59087 -32.18689 -31.53233 -27.81335 -27.48378 -27.16763 -23.77509 -23.53754 -21.56643 -20.90485 -20.62761 -19.86518 -18.95880 -17.61423 -16.63271 -16.35221 -15.90829 -15.67621 -15.47077 -15.26848 -14.58267 -14.47637 -14.14860 -13.99155 -13.83955 -13.25112 -12.94093 -12.62777 -12.53642 -12.36413 -12.26495 -11.93266 -11.84095 -11.75579 -11.74604 -11.44346 -11.33593 -11.22262 -11.20636 -11.04007 -10.94080 -10.92168 -10.85735 -10.81521 -10.59715 -10.52860 -10.40257 -9.94895 -9.64211 -9.30422 -9.06599 -8.40899 -6.05922 -4.08906 0.50489 2.89167 3.30354 3.36463 3.40661 3.96023 4.20576 4.34265 4.39520 4.42550 4.47718 4.72524 4.77514 4.87322 4.98562 5.06166 5.14407 5.19064 5.20263 5.24577 5.30008 5.31138 5.37659 5.43492 5.49182 5.52829 5.58599 5.61648 5.72091 5.77158 5.83306 5.83869 5.88679 5.93252 6.02082 6.10601 6.13782 6.17049 6.25000 6.27238 6.45419 6.87180 6.96157 7.56739 7.66751 7.92173 8.32783 8.97325 9.55847 11.05294 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.003091 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.169910 B = 9057.177646 C =10080.413616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.099 4.099 6 H 0.083 0.917 7 C -0.117 4.117 8 C -0.126 4.126 9 C -0.137 4.137 10 C 0.152 3.848 11 H 0.088 0.912 12 N -1.118 6.118 13 S 2.596 3.404 14 O -0.966 6.966 15 O -0.960 6.960 16 C -0.610 4.610 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.415 0.585 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.215 2.257 -20.402 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.157 4.157 4 C -0.154 4.154 5 C -0.119 4.119 6 H 0.101 0.899 7 C -0.155 4.155 8 C -0.164 4.164 9 C -0.177 4.177 10 C 0.044 3.956 11 H 0.106 0.894 12 N -0.877 5.877 13 S 2.692 3.308 14 O -0.956 6.956 15 O -0.950 6.950 16 C -0.741 4.741 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.251 0.749 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.039 0.961 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.371 2.123 -20.502 24.039 hybrid contribution -0.064 -0.209 1.048 1.071 sum -12.435 1.914 -19.454 23.168 Atomic orbital electron populations 1.21774 0.96055 1.01509 1.01667 1.21561 0.95754 0.97086 1.02158 1.21641 0.95254 0.96690 1.02109 1.21695 0.95321 0.95957 1.02429 1.22071 0.94088 0.96940 0.98771 0.89870 1.22438 0.97942 0.98557 0.96566 1.22489 0.94645 0.98263 1.01031 1.22864 0.98293 0.99215 0.97296 1.21446 0.93763 0.81370 0.99026 0.89381 1.55982 1.51050 1.15503 1.65201 1.05388 0.73883 0.74172 0.77328 1.93574 1.84311 1.32024 1.85721 1.93573 1.57849 1.64003 1.79602 1.30555 1.10973 1.11540 1.21063 1.21492 0.93464 1.01579 0.97964 1.19057 0.96924 0.97303 0.87437 1.21259 0.98425 1.44961 0.91802 0.92381 1.25016 0.95837 0.95096 0.98422 1.69960 1.23554 1.46145 1.13779 0.86556 0.82373 0.78671 0.80218 1.20565 1.21172 1.19738 0.92898 0.92744 0.92959 0.92139 0.91827 0.91901 0.92001 0.91739 0.91064 0.91590 0.91423 0.91263 0.91482 0.90495 0.90768 0.74855 0.85641 0.85340 0.91628 0.91600 0.96160 0.96140 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.84 5.07 -26.73 -0.14 -0.97 16 4 C -0.12 -0.87 3.26 -26.73 -0.09 -0.96 16 5 C -0.10 -0.76 2.93 -89.50 -0.26 -1.02 16 6 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 7 C -0.12 -0.79 5.53 -25.08 -0.14 -0.93 16 8 C -0.13 -0.93 6.91 -24.73 -0.17 -1.10 16 9 C -0.14 -1.29 6.53 -25.07 -0.16 -1.46 16 10 C 0.15 1.44 3.32 -66.81 -0.22 1.22 16 11 H 0.09 0.82 7.19 -51.93 -0.37 0.45 16 12 N -1.12 -11.86 4.50 -3.94 -0.02 -11.88 16 13 S 2.60 37.98 5.39 -107.50 -0.58 37.40 16 14 O -0.97 -17.04 18.08 -57.54 -1.04 -18.08 16 15 O -0.96 -16.73 17.82 -57.54 -1.03 -17.76 16 16 C -0.61 -9.32 5.96 37.16 0.22 -9.10 16 17 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 18 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 19 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 20 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 23 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.40 7.51 -51.92 -0.39 0.01 16 34 H 0.06 0.45 7.04 -51.93 -0.37 0.09 16 35 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.45 7.76 -51.93 -0.40 0.04 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.72 8.05 -51.92 -0.42 0.30 16 42 H 0.41 3.76 6.41 -34.47 -0.22 3.53 16 43 H 0.13 1.69 7.45 -51.93 -0.39 1.31 16 44 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -34.07 395.24 -11.68 -45.75 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -9.25 Total: -0.82 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: -1.44 Total: -31.34 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.72 Total: -37.72 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -2.07 Total: -35.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 37.98 SS G_CDS: -0.58 Total: 37.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.07 -11.68 -45.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068912782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.569 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds