Wall clock time and date at job start Tue Mar 31 2020 11:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47194 * 2 1 4 4 C 1.53000 * 109.46916 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47105 * 179.97438 * 4 3 2 6 6 H 1.09005 * 110.05571 * 53.58116 * 5 4 3 7 7 C 1.54259 * 110.03380 * 292.16839 * 5 4 3 8 8 C 1.54888 * 104.19704 * 217.10323 * 7 5 4 9 9 C 1.54897 * 102.74895 * 37.93903 * 8 7 5 10 10 C 1.53876 * 110.03186 * 174.99806 * 5 4 3 11 11 H 1.09000 * 110.07085 * 238.59132 * 10 5 4 12 12 N 1.46499 * 110.03294 * 0.02562 * 10 5 4 13 13 S 1.65597 * 119.99926 * 213.89735 * 12 10 5 14 14 O 1.42100 * 104.27735 * 180.79571 * 13 12 10 15 15 O 1.42101 * 104.27674 * 308.65500 * 13 12 10 16 16 C 1.81402 * 104.45066 * 64.71997 * 13 12 10 17 17 C 1.53002 * 109.47127 * 180.02562 * 16 13 12 18 18 C 1.52995 * 109.47263 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.47551 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99614 * 359.97438 * 19 18 17 21 21 C 1.37870 * 120.00253 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99972 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47446 * 89.99781 * 23 21 19 25 25 H 1.48502 * 109.47323 * 209.99816 * 23 21 19 26 26 H 1.48504 * 109.47161 * 330.00039 * 23 21 19 27 27 H 1.08995 * 109.47458 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47052 * 300.00429 * 1 2 3 29 29 H 1.09007 * 109.46838 * 59.99773 * 1 2 3 30 30 H 1.09001 * 109.46721 * 239.99985 * 2 1 3 31 31 H 1.08993 * 109.47047 * 120.00154 * 2 1 3 32 32 H 1.08997 * 109.47111 * 59.99606 * 3 2 1 33 33 H 1.09009 * 109.46901 * 299.99820 * 3 2 1 34 34 H 1.09001 * 109.47022 * 59.99971 * 4 3 2 35 35 H 1.08993 * 109.47025 * 299.99970 * 4 3 2 36 36 H 1.08999 * 110.49223 * 98.42630 * 7 5 4 37 37 H 1.08998 * 110.49006 * 335.77820 * 7 5 4 38 38 H 1.09004 * 110.75613 * 279.62702 * 8 7 5 39 39 H 1.08995 * 110.91801 * 156.32793 * 8 7 5 40 40 H 1.08993 * 110.48883 * 203.38114 * 9 8 7 41 41 H 1.09008 * 110.59337 * 80.79167 * 9 8 7 42 42 H 0.97001 * 119.99790 * 33.61524 * 12 10 5 43 43 H 1.08990 * 109.47555 * 300.00369 * 16 13 12 44 44 H 1.09004 * 109.46533 * 60.00490 * 16 13 12 45 45 H 1.09004 * 109.47124 * 300.00530 * 17 16 13 46 46 H 1.08998 * 109.47317 * 60.00145 * 17 16 13 47 47 H 1.09004 * 109.47140 * 300.00100 * 18 17 16 48 48 H 1.09006 * 109.47528 * 59.99646 * 18 17 16 49 49 H 0.97003 * 119.99598 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 1 3.6320 3.4402 0.8227 7 6 3.7402 3.5650 -1.3435 8 6 4.9684 4.4620 -1.6366 9 6 6.1521 3.5916 -1.1463 10 6 5.6137 2.9017 0.1241 11 1 5.9105 3.4648 1.0090 12 7 6.1256 1.5316 0.2059 13 16 7.4606 1.2001 1.1280 14 8 7.6691 -0.1947 0.9541 15 8 8.4292 2.1453 0.6947 16 6 6.9373 1.5587 2.8275 17 6 8.0985 1.2885 3.7864 18 6 7.6571 1.5903 5.2198 19 6 8.8010 1.3248 6.1643 20 1 9.7481 0.9753 5.7805 21 6 8.6385 1.5280 7.5182 22 7 7.4853 1.9541 7.9855 23 14 10.0567 1.1996 8.6888 24 1 10.8610 2.4372 8.8516 25 1 9.5218 0.7797 10.0090 26 1 10.9147 0.1207 8.1365 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9287 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 2.8395 4.1713 -1.2467 37 1 3.6165 2.8192 -2.1286 38 1 4.9118 5.3916 -1.0702 39 1 5.0552 4.6663 -2.7037 40 1 7.0116 4.2172 -0.9055 41 1 6.4201 2.8498 -1.8987 42 1 5.6801 0.8178 -0.2768 43 1 6.6400 2.6045 2.9031 44 1 6.0931 0.9210 3.0898 45 1 8.3963 0.2426 3.7108 46 1 8.9425 1.9264 3.5239 47 1 7.3590 2.6360 5.2957 48 1 6.8132 0.9521 5.4822 49 1 7.3710 2.0967 8.9381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068912782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:25 Heat of formation + Delta-G solvation = -142.266529 kcal Electronic energy + Delta-G solvation = -25376.579023 eV Core-core repulsion = 21848.934115 eV Total energy + Delta-G solvation = -3527.644908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.20716 -38.15320 -37.03315 -36.47621 -36.21734 -34.41354 -34.17200 -32.12979 -29.66686 -28.13952 -27.83334 -25.64249 -24.17749 -22.47515 -22.12505 -21.47206 -20.74107 -19.94613 -18.77134 -18.55003 -17.38404 -17.12810 -16.54575 -16.52012 -16.40782 -16.08499 -15.71980 -15.08864 -14.58559 -14.50523 -14.48799 -14.09743 -13.94826 -13.68889 -13.52666 -13.27610 -13.18216 -13.11882 -13.05522 -12.96342 -12.76633 -12.63111 -12.34992 -12.21812 -12.12779 -12.03591 -11.83845 -11.75993 -11.66223 -11.50077 -11.43749 -11.37455 -11.17233 -11.14947 -11.06890 -10.58134 -10.28593 -8.23416 -6.34419 -0.72158 1.39678 1.40320 1.51759 1.80860 2.39226 2.75466 3.10107 3.24564 3.53055 3.72523 3.74569 3.80791 3.90659 4.15938 4.17824 4.27099 4.34423 4.38584 4.46312 4.58195 4.62593 4.65233 4.66765 4.69731 4.82238 4.86709 4.93876 4.97807 5.00838 5.05063 5.06015 5.12445 5.21163 5.27043 5.29380 5.36086 5.39033 5.44385 5.49651 5.53791 5.57692 5.61632 5.61998 5.78608 6.13696 6.19036 6.81030 7.34939 8.88032 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.003091 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.169910 B = 9057.177646 C =10080.413616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.119 4.119 5 C -0.094 4.094 6 H 0.088 0.912 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.142 4.142 10 C 0.140 3.860 11 H 0.090 0.910 12 N -1.101 6.101 13 S 2.625 3.375 14 O -0.995 6.995 15 O -0.987 6.987 16 C -0.610 4.610 17 C -0.106 4.106 18 C 0.032 3.968 19 C -0.553 4.553 20 H 0.059 0.941 21 C 0.003 3.997 22 N -0.929 5.929 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.265 1.265 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.425 0.575 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.003 0.997 48 H 0.002 0.998 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.804 2.529 -21.306 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.152 4.152 4 C -0.157 4.157 5 C -0.114 4.114 6 H 0.107 0.893 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.182 4.182 10 C 0.033 3.967 11 H 0.108 0.892 12 N -0.864 5.864 13 S 2.720 3.280 14 O -0.985 6.985 15 O -0.977 6.977 16 C -0.740 4.740 17 C -0.145 4.145 18 C -0.006 4.006 19 C -0.591 4.591 20 H 0.077 0.923 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.787 3.213 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.190 1.190 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.264 0.736 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.022 0.978 48 H 0.021 0.979 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.959 2.388 -21.412 25.142 hybrid contribution 0.067 -0.270 1.288 1.317 sum -12.892 2.119 -20.124 23.993 Atomic orbital electron populations 1.21774 0.95696 1.01657 1.01880 1.21578 0.96118 0.97256 1.01838 1.21594 0.94735 0.96507 1.02381 1.21719 0.95790 0.95825 1.02365 1.22054 0.92368 0.97270 0.99703 0.89349 1.22424 0.98052 0.98575 0.95937 1.22478 0.93802 0.98112 1.01579 1.22881 0.98777 0.99333 0.97165 1.21725 0.95241 0.80333 0.99362 0.89197 1.55594 1.50114 1.16601 1.64098 1.04332 0.74009 0.72855 0.76815 1.93529 1.85178 1.33784 1.86044 1.93540 1.59600 1.64623 1.79926 1.30511 1.09595 1.13296 1.20647 1.21306 0.95396 1.01553 0.96283 1.18948 0.95644 0.95743 0.90248 1.21742 0.99351 1.45102 0.92946 0.92251 1.25923 0.98568 0.94728 1.00273 1.70070 1.25526 1.46932 1.14358 0.85486 0.79068 0.78887 0.77883 1.19674 1.20487 1.18960 0.92837 0.92989 0.92275 0.91840 0.92796 0.92246 0.91063 0.91157 0.91830 0.90370 0.90953 0.90848 0.90622 0.91878 0.91116 0.73601 0.83782 0.83665 0.91745 0.91580 0.97823 0.97913 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.13 -1.71 5.93 30.60 0.18 -1.53 16 3 C -0.11 -1.39 5.07 30.59 0.16 -1.24 16 4 C -0.12 -1.56 3.26 30.59 0.10 -1.46 16 5 C -0.09 -1.24 2.93 -10.07 -0.03 -1.27 16 6 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 7 C -0.11 -1.22 5.53 31.67 0.18 -1.05 16 8 C -0.12 -1.53 6.91 31.89 0.22 -1.31 16 9 C -0.14 -2.50 6.53 31.67 0.21 -2.29 16 10 C 0.14 2.46 3.32 45.72 0.15 2.61 16 11 H 0.09 1.55 7.19 -2.39 -0.02 1.53 16 12 N -1.10 -21.95 4.50 -166.38 -0.75 -22.70 16 13 S 2.62 75.04 5.39 -56.49 -0.30 74.73 16 14 O -1.00 -34.58 18.08 -127.65 -2.31 -36.89 16 15 O -0.99 -33.97 17.82 -127.65 -2.27 -36.25 16 16 C -0.61 -18.27 5.96 71.98 0.43 -17.84 16 17 C -0.11 -4.35 5.16 30.59 0.16 -4.19 16 18 C 0.03 1.68 4.97 29.85 0.15 1.82 16 19 C -0.55 -31.65 9.11 25.60 0.23 -31.41 16 20 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 21 C 0.00 0.19 5.46 84.65 0.46 0.66 16 22 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 23 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.74 7.51 -2.38 -0.02 0.73 16 34 H 0.07 0.84 7.04 -2.39 -0.02 0.82 16 35 H 0.06 0.94 7.52 -2.39 -0.02 0.92 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.74 7.76 -2.39 -0.02 0.73 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.28 8.05 -2.38 -0.02 1.26 16 42 H 0.42 7.03 6.41 -96.74 -0.62 6.41 16 43 H 0.14 3.75 7.45 -2.40 -0.02 3.73 16 44 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 45 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 46 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 47 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 48 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 49 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -72.62 395.24 0.25 -72.37 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.27 Total: 17.48 kcal Atomic # 6 Polarization: -62.96 SS G_CDS: 3.31 Total: -59.65 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -0.46 Total: -78.11 kcal Atomic # 8 Polarization: -68.56 SS G_CDS: -4.58 Total: -73.14 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 75.04 SS G_CDS: -0.30 Total: 74.73 kcal Total: -72.62 0.25 -72.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068912782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.897 kcal (2) G-P(sol) polarization free energy of solvation -72.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds