Wall clock time and date at job start Tue Mar 31 2020 11:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.43159 * 307.53662 * 5 4 3 7 7 C 1.54886 * 110.49149 * 70.22476 * 5 4 3 8 8 C 1.54886 * 102.75168 * 156.62292 * 7 5 4 9 9 C 1.54263 * 104.19378 * 322.05496 * 8 7 5 10 10 C 1.53877 * 106.59886 * 23.61315 * 9 8 7 11 11 H 1.09004 * 110.03111 * 240.71108 * 10 9 8 12 12 N 1.46499 * 110.03190 * 119.28688 * 10 9 8 13 13 S 1.65599 * 120.00519 * 97.83247 * 12 10 9 14 14 O 1.42100 * 104.27869 * 181.06959 * 13 12 10 15 15 O 1.42103 * 104.27234 * 308.92713 * 13 12 10 16 16 C 1.81398 * 104.44952 * 64.99861 * 13 12 10 17 17 C 1.52998 * 109.46931 * 180.02562 * 16 13 12 18 18 C 1.53002 * 109.46689 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.46918 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00041 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00224 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99546 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00009 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47108 * 60.00282 * 23 21 19 25 25 H 1.48501 * 109.46780 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47132 * 300.00095 * 23 21 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 35 35 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 36 36 H 1.08999 * 110.75314 * 274.94161 * 7 5 4 37 37 H 1.09005 * 110.75439 * 38.30302 * 7 5 4 38 38 H 1.09002 * 110.48179 * 203.38287 * 8 7 5 39 39 H 1.08994 * 110.60023 * 80.79065 * 8 7 5 40 40 H 1.08998 * 110.03454 * 264.32774 * 9 8 7 41 41 H 1.09003 * 110.03053 * 142.89662 * 9 8 7 42 42 H 0.97009 * 119.99505 * 277.83234 * 12 10 9 43 43 H 1.09012 * 109.46960 * 300.00157 * 16 13 12 44 44 H 1.08997 * 109.47104 * 59.99903 * 16 13 12 45 45 H 1.08995 * 109.47133 * 299.99420 * 17 16 13 46 46 H 1.09002 * 109.46997 * 60.00299 * 17 16 13 47 47 H 1.08999 * 109.47468 * 299.99726 * 18 17 16 48 48 H 1.08994 * 109.47225 * 60.00246 * 18 17 16 49 49 H 0.96998 * 119.99633 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6204 3.4514 -0.8087 7 6 3.7973 3.5594 1.3667 8 6 4.8547 4.6902 1.4148 9 6 6.1098 4.0620 0.7748 10 6 5.6172 2.9142 -0.1240 11 1 6.0376 1.9675 0.2153 12 7 6.0028 3.1652 -1.5149 13 16 7.3576 2.4476 -2.1411 14 8 7.4264 2.9327 -3.4749 15 8 8.3791 2.7460 -1.1993 16 6 6.9777 0.6739 -2.1276 17 6 8.1676 -0.1067 -2.6893 18 6 7.8473 -1.6028 -2.6773 19 6 9.0192 -2.3717 -3.2311 20 1 9.9036 -1.8460 -3.5591 21 6 8.9617 -3.7465 -3.3199 22 7 7.8844 -4.3867 -2.9209 23 14 10.4140 -4.6995 -4.0070 24 1 11.6141 -4.4440 -3.1706 25 1 10.1032 -6.1516 -3.9953 26 1 10.6793 -4.2607 -5.4006 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.9330 0.9289 0.8909 35 1 3.9337 0.9285 -0.8891 36 1 2.7888 3.9722 1.3922 37 1 3.9481 2.8545 2.1843 38 1 5.0567 4.9799 2.4460 39 1 4.5216 5.5515 0.8358 40 1 6.7691 3.6723 1.5503 41 1 6.6357 4.8057 0.1761 42 1 5.4644 3.7517 -2.0692 43 1 6.7824 0.3519 -1.1046 44 1 6.0970 0.4864 -2.7419 45 1 8.3632 0.2152 -3.7121 46 1 9.0480 0.0809 -2.0745 47 1 7.6520 -1.9245 -1.6544 48 1 6.9669 -1.7908 -3.2917 49 1 7.8442 -5.3539 -2.9830 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068912785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:29 Heat of formation + Delta-G solvation = -150.141012 kcal Electronic energy + Delta-G solvation = -25363.263300 eV Core-core repulsion = 21835.276929 eV Total energy + Delta-G solvation = -3527.986372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.01530 -38.15636 -37.05137 -36.48470 -36.35402 -34.36600 -34.17302 -32.17686 -29.66634 -28.25644 -27.80134 -25.63906 -23.92658 -22.48116 -22.03424 -21.35313 -21.06586 -20.16074 -18.64027 -18.41857 -17.65836 -17.16291 -16.66435 -16.47606 -16.31271 -15.93701 -15.70897 -14.79522 -14.67335 -14.60511 -14.47818 -14.11315 -13.92090 -13.67253 -13.55176 -13.37522 -13.21391 -13.13211 -13.07387 -12.97260 -12.74223 -12.65865 -12.40680 -12.32476 -12.17585 -11.94657 -11.87218 -11.76842 -11.65872 -11.50610 -11.40807 -11.37914 -11.33869 -11.14067 -11.02732 -10.57466 -10.26506 -8.22987 -6.34083 -0.73490 1.39756 1.42253 1.50187 1.79292 2.39453 2.74221 3.10475 3.22783 3.49553 3.69262 3.74447 3.87697 3.91077 4.07854 4.16290 4.28666 4.36111 4.37211 4.45162 4.60186 4.60915 4.64021 4.65821 4.67944 4.79126 4.84399 4.93669 4.97563 4.99489 5.05092 5.06848 5.12673 5.20007 5.27943 5.29515 5.35601 5.38711 5.44250 5.48058 5.54320 5.56853 5.62076 5.63293 5.78651 6.16042 6.19212 6.81077 7.35166 8.88219 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.003539 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.095969 B = 7911.028640 C = 9919.400417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C -0.111 4.111 4 C -0.123 4.123 5 C -0.088 4.088 6 H 0.094 0.906 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.144 4.144 10 C 0.140 3.860 11 H 0.087 0.913 12 N -1.100 6.100 13 S 2.626 3.374 14 O -0.995 6.995 15 O -0.987 6.987 16 C -0.610 4.610 17 C -0.106 4.106 18 C 0.033 3.967 19 C -0.555 4.555 20 H 0.059 0.941 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.962 3.038 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.268 1.268 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.426 0.574 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.003 0.997 48 H 0.002 0.998 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.787 17.049 9.900 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C -0.148 4.148 4 C -0.161 4.161 5 C -0.108 4.108 6 H 0.112 0.888 7 C -0.152 4.152 8 C -0.157 4.157 9 C -0.183 4.183 10 C 0.033 3.967 11 H 0.105 0.895 12 N -0.861 5.861 13 S 2.721 3.279 14 O -0.985 6.985 15 O -0.977 6.977 16 C -0.741 4.741 17 C -0.145 4.145 18 C -0.006 4.006 19 C -0.593 4.593 20 H 0.078 0.922 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.786 3.214 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.193 1.193 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.262 0.738 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.022 0.978 48 H 0.021 0.979 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.961 17.242 9.734 24.227 hybrid contribution 0.178 -1.247 -0.572 1.383 sum -13.783 15.996 9.163 23.017 Atomic orbital electron populations 1.21762 0.95390 1.01610 1.02077 1.21589 0.96363 0.97529 1.01555 1.21553 0.94490 0.96195 1.02598 1.21759 0.96333 0.95705 1.02263 1.22307 0.92188 0.96771 0.99565 0.88821 1.22556 0.99463 0.97213 0.95939 1.22333 0.94176 0.98160 1.01037 1.22671 0.98788 0.97835 0.99042 1.21755 0.96755 0.98757 0.79406 0.89519 1.55463 1.47339 1.62522 1.20750 1.04317 0.73824 0.77144 0.72636 1.93530 1.86423 1.79377 1.39163 1.93542 1.57086 1.83288 1.63792 1.30521 1.08860 1.22886 1.11801 1.21302 0.95047 0.97698 1.00427 1.18941 0.95788 0.89932 0.95895 1.21714 1.02498 0.92643 1.42419 0.92236 1.25918 0.98934 0.98939 0.95608 1.70062 1.29618 1.08803 1.48351 0.85549 0.79319 0.77276 0.79244 1.19234 1.20556 1.19263 0.93109 0.92630 0.92056 0.92336 0.93209 0.91807 0.90815 0.91572 0.92490 0.89856 0.90857 0.90839 0.91014 0.91343 0.91741 0.73751 0.83925 0.83669 0.91695 0.91588 0.97833 0.97930 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.13 -2.11 5.93 30.60 0.18 -1.93 16 3 C -0.11 -1.48 5.09 30.60 0.16 -1.32 16 4 C -0.12 -1.84 4.56 30.59 0.14 -1.70 16 5 C -0.09 -1.17 2.56 -9.72 -0.02 -1.20 16 6 H 0.09 1.09 7.83 -2.39 -0.02 1.07 16 7 C -0.11 -1.24 5.67 31.88 0.18 -1.06 16 8 C -0.12 -1.47 6.83 31.67 0.22 -1.26 16 9 C -0.14 -2.54 6.60 31.32 0.21 -2.33 16 10 C 0.14 2.49 2.91 45.72 0.13 2.63 16 11 H 0.09 1.58 6.92 -2.39 -0.02 1.57 16 12 N -1.10 -21.77 5.28 -166.37 -0.88 -22.65 16 13 S 2.63 75.36 5.38 -56.49 -0.30 75.06 16 14 O -0.99 -34.63 18.08 -127.65 -2.31 -36.94 16 15 O -0.99 -34.16 17.82 -127.65 -2.27 -36.43 16 16 C -0.61 -18.41 5.97 71.98 0.43 -17.98 16 17 C -0.11 -4.33 5.16 30.59 0.16 -4.17 16 18 C 0.03 1.69 4.97 29.85 0.15 1.84 16 19 C -0.55 -31.73 9.11 25.60 0.23 -31.49 16 20 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 21 C 0.00 0.25 5.46 84.66 0.46 0.72 16 22 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 23 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.82 7.55 -2.39 -0.02 0.80 16 34 H 0.07 1.01 8.02 -2.39 -0.02 0.99 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 0.71 8.06 -2.39 -0.02 0.69 16 37 H 0.07 0.80 7.97 -2.38 -0.02 0.79 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.27 7.92 -2.39 -0.02 1.26 16 42 H 0.43 6.61 8.60 -96.74 -0.83 5.78 16 43 H 0.14 3.78 7.48 -2.38 -0.02 3.76 16 44 H 0.15 3.88 8.14 -2.39 -0.02 3.86 16 45 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 47 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -72.77 399.95 -0.06 -72.84 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.06 Total: 17.87 kcal Atomic # 6 Polarization: -63.97 SS G_CDS: 3.33 Total: -60.64 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -0.59 Total: -78.05 kcal Atomic # 8 Polarization: -68.79 SS G_CDS: -4.58 Total: -73.37 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 75.36 SS G_CDS: -0.30 Total: 75.06 kcal Total: -72.77 -0.06 -72.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068912785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.304 kcal (2) G-P(sol) polarization free energy of solvation -72.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds