Wall clock time and date at job start Tue Mar 31 2020 11:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47358 * 2 1 4 4 C 1.52996 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47269 * 180.02562 * 4 3 2 6 6 H 1.09007 * 110.05516 * 306.41504 * 5 4 3 7 7 C 1.54259 * 110.03321 * 67.83434 * 5 4 3 8 8 C 1.54890 * 104.19775 * 142.89752 * 7 5 4 9 9 C 1.54886 * 102.74482 * 322.05729 * 8 7 5 10 10 C 1.53875 * 110.03509 * 185.00211 * 5 4 3 11 11 H 1.09005 * 110.03404 * 121.37368 * 10 5 4 12 12 N 1.46509 * 110.02950 * 359.97438 * 10 5 4 13 13 S 1.65597 * 119.99845 * 145.00186 * 12 10 5 14 14 O 1.42109 * 104.27636 * 308.92713 * 13 12 10 15 15 O 1.42095 * 104.27718 * 181.06937 * 13 12 10 16 16 C 1.81400 * 104.45043 * 64.99555 * 13 12 10 17 17 C 1.53006 * 109.47145 * 179.97438 * 16 13 12 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 13 19 19 C 1.50696 * 109.47242 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99967 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00542 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00563 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99513 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46964 * 90.00276 * 23 21 19 25 25 H 1.48502 * 109.47035 * 210.00108 * 23 21 19 26 26 H 1.48499 * 109.47257 * 330.00183 * 23 21 19 27 27 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47756 * 300.00475 * 1 2 3 29 29 H 1.09003 * 109.46838 * 60.00073 * 1 2 3 30 30 H 1.09000 * 109.47467 * 239.99167 * 2 1 3 31 31 H 1.09003 * 109.46838 * 119.99927 * 2 1 3 32 32 H 1.09004 * 109.47318 * 59.99681 * 3 2 1 33 33 H 1.09003 * 109.47086 * 299.99775 * 3 2 1 34 34 H 1.08998 * 109.47071 * 60.00240 * 4 3 2 35 35 H 1.09003 * 109.47318 * 300.00162 * 4 3 2 36 36 H 1.09006 * 110.48627 * 261.57312 * 7 5 4 37 37 H 1.08996 * 110.48917 * 24.08669 * 7 5 4 38 38 H 1.09001 * 110.75679 * 80.37188 * 8 7 5 39 39 H 1.08997 * 110.75554 * 203.55681 * 8 7 5 40 40 H 1.09002 * 110.49082 * 279.26112 * 9 8 7 41 41 H 1.09005 * 110.48370 * 156.62124 * 9 8 7 42 42 H 0.96992 * 119.99895 * 324.99567 * 12 10 5 43 43 H 1.09001 * 109.46713 * 60.00077 * 16 13 12 44 44 H 1.08993 * 109.47294 * 299.99609 * 16 13 12 45 45 H 1.09001 * 109.46801 * 300.00406 * 17 16 13 46 46 H 1.09001 * 109.46998 * 60.00003 * 17 16 13 47 47 H 1.08996 * 109.46952 * 300.00302 * 18 17 16 48 48 H 1.09001 * 109.46832 * 60.00321 * 18 17 16 49 49 H 0.96999 * 120.00061 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6319 3.4402 -0.8228 7 6 3.7402 3.5650 1.3435 8 6 4.9684 4.4620 1.6366 9 6 6.1520 3.5916 1.1463 10 6 5.6136 2.9018 -0.1241 11 1 5.9097 3.4645 -1.0095 12 7 6.1256 1.5315 -0.2059 13 16 7.4441 1.1953 -1.1496 14 8 7.1265 1.7659 -2.4117 15 8 7.6303 -0.2060 -1.0051 16 6 8.8052 2.1025 -0.3654 17 6 10.0953 1.8687 -1.1541 18 6 11.2434 2.6334 -0.4923 19 6 12.5139 2.4036 -1.2695 20 1 12.5034 1.7753 -2.1479 21 6 13.6897 2.9954 -0.8593 22 7 14.7983 2.7952 -1.5378 23 14 13.7079 4.0815 0.6605 24 1 13.9976 3.2524 1.8579 25 1 14.7574 5.1217 0.5129 26 1 12.3832 4.7337 0.8187 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9286 0.8909 36 1 2.8394 4.1712 1.2467 37 1 3.6142 2.8189 2.1281 38 1 4.9118 5.3916 1.0702 39 1 5.0515 4.6662 2.7041 40 1 6.4179 2.8499 1.8995 41 1 7.0115 4.2173 0.9056 42 1 5.6922 0.8214 0.2927 43 1 8.9359 1.7488 0.6573 44 1 8.5735 3.1675 -0.3547 45 1 10.3268 0.8036 -1.1644 46 1 9.9648 2.2220 -2.1770 47 1 11.0120 3.6984 -0.4816 48 1 11.3736 2.2796 0.5304 49 1 15.6254 3.2119 -1.2494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068912797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:39 Heat of formation + Delta-G solvation = -117.786899 kcal Electronic energy + Delta-G solvation = -25333.660911 eV Core-core repulsion = 21807.077519 eV Total energy + Delta-G solvation = -3526.583392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.59454 -36.91364 -35.78562 -35.72217 -34.81124 -33.63968 -32.22633 -31.62034 -28.39457 -27.55889 -27.23267 -23.70506 -23.54607 -21.62398 -20.95683 -20.52551 -19.90616 -19.07546 -17.69497 -16.90507 -16.47582 -15.96921 -15.92255 -15.58240 -15.38008 -14.53702 -14.33644 -14.18489 -14.07272 -13.94441 -13.31022 -13.06336 -12.88739 -12.63342 -12.43920 -12.33758 -12.13586 -11.91850 -11.87770 -11.82039 -11.62065 -11.50417 -11.40668 -11.34069 -11.11248 -11.00380 -10.96326 -10.94989 -10.89492 -10.65639 -10.58365 -10.09478 -9.89275 -9.80524 -9.36739 -9.24241 -8.59089 -6.08626 -4.07853 0.42646 2.81463 3.26074 3.33596 3.35527 3.90104 4.13614 4.23223 4.34037 4.39867 4.40704 4.65226 4.69855 4.80038 4.93579 4.99043 5.05700 5.08728 5.11327 5.16984 5.22947 5.25394 5.27407 5.35632 5.43909 5.45615 5.51213 5.54626 5.60621 5.69499 5.75617 5.76898 5.78082 5.85467 5.90486 6.00560 6.07378 6.09153 6.14127 6.17632 6.27202 6.67069 6.89385 7.12497 7.26565 7.70904 8.47517 8.95888 9.52440 11.04640 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.002851 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.369803 B = 9819.639538 C =10738.782501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.093 4.093 6 H 0.082 0.918 7 C -0.118 4.118 8 C -0.123 4.123 9 C -0.150 4.150 10 C 0.146 3.854 11 H 0.097 0.903 12 N -1.118 6.118 13 S 2.599 3.401 14 O -0.961 6.961 15 O -0.963 6.963 16 C -0.616 4.616 17 C -0.097 4.097 18 C -0.004 4.004 19 C -0.527 4.527 20 H 0.074 0.926 21 C 0.067 3.933 22 N -0.900 5.900 23 Si 0.881 3.119 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.415 0.585 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.020 0.980 48 H 0.015 0.985 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.370 0.794 8.057 29.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.157 4.157 4 C -0.154 4.154 5 C -0.113 4.113 6 H 0.100 0.900 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.189 4.189 10 C 0.038 3.962 11 H 0.115 0.885 12 N -0.876 5.876 13 S 2.694 3.306 14 O -0.950 6.950 15 O -0.953 6.953 16 C -0.747 4.747 17 C -0.137 4.137 18 C -0.043 4.043 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.135 4.135 22 N -0.539 5.539 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.252 0.748 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.117 0.407 7.149 29.015 hybrid contribution 0.289 0.742 1.579 1.769 sum -27.828 1.149 8.729 29.188 Atomic orbital electron populations 1.21772 0.96035 1.01509 1.01665 1.21561 0.95740 0.97107 1.02153 1.21639 0.95315 0.96656 1.02054 1.21686 0.95216 0.96023 1.02442 1.21989 0.93896 0.96884 0.98567 0.89997 1.22460 0.97954 0.98582 0.96612 1.22440 0.94368 0.98178 1.01162 1.23045 0.98660 0.99487 0.97757 1.21533 0.94440 0.81522 0.98706 0.88505 1.55945 1.47964 1.16055 1.67670 1.05297 0.75291 0.75017 0.74966 1.93578 1.82279 1.80025 1.39156 1.93583 1.85789 1.29364 1.86603 1.30651 1.16240 1.14555 1.13260 1.21309 0.91349 1.02433 0.98585 1.19522 0.93362 0.95319 0.96049 1.21136 0.91358 1.30951 1.13018 0.90743 1.25033 0.95487 0.96153 0.96801 1.69911 0.99653 1.44470 1.39833 0.86771 0.78021 0.80790 0.83636 1.20249 1.21280 1.19056 0.92888 0.92889 0.92821 0.91938 0.92067 0.91955 0.92015 0.91094 0.91750 0.91582 0.91348 0.91193 0.91324 0.90349 0.90718 0.74816 0.85301 0.85527 0.91053 0.91016 0.96207 0.96636 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.13 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.12 -0.78 5.07 -26.74 -0.14 -0.91 16 4 C -0.12 -0.85 3.27 -26.73 -0.09 -0.94 16 5 C -0.09 -0.69 2.93 -89.50 -0.26 -0.95 16 6 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 7 C -0.12 -0.73 5.53 -25.08 -0.14 -0.87 16 8 C -0.12 -0.82 6.91 -24.74 -0.17 -0.99 16 9 C -0.15 -1.18 6.46 -25.08 -0.16 -1.34 16 10 C 0.15 1.29 3.45 -66.81 -0.23 1.06 16 11 H 0.10 0.92 7.52 -51.93 -0.39 0.53 16 12 N -1.12 -11.16 4.45 -3.94 -0.02 -11.18 16 13 S 2.60 36.60 5.44 -107.50 -0.58 36.02 16 14 O -0.96 -16.43 17.42 -57.54 -1.00 -17.43 16 15 O -0.96 -16.52 18.08 -57.54 -1.04 -17.56 16 16 C -0.62 -8.78 6.06 37.16 0.23 -8.55 16 17 C -0.10 -1.89 5.16 -26.73 -0.14 -2.03 16 18 C 0.00 -0.09 4.04 -27.89 -0.11 -0.20 16 19 C -0.53 -15.00 9.66 -34.44 -0.33 -15.34 16 20 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 21 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 22 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 23 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.37 7.51 -51.93 -0.39 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 35 H 0.06 0.43 7.04 -51.93 -0.37 0.07 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.41 7.76 -51.93 -0.40 0.01 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.59 8.05 -51.93 -0.42 0.18 16 41 H 0.07 0.60 7.64 -51.93 -0.40 0.20 16 42 H 0.42 3.51 6.49 -34.47 -0.22 3.28 16 43 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 44 H 0.13 1.55 7.58 -51.93 -0.39 1.16 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 48 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -34.78 391.45 -11.29 -46.07 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -9.22 Total: -0.84 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: -1.43 Total: -30.77 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.76 Total: -38.13 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -2.04 Total: -34.99 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 36.60 SS G_CDS: -0.58 Total: 36.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.78 -11.29 -46.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068912797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.714 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds