Wall clock time and date at job start Tue Mar 31 2020 11:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47358 * 2 1 4 4 C 1.52996 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47269 * 180.02562 * 4 3 2 6 6 H 1.09007 * 110.05516 * 306.41504 * 5 4 3 7 7 C 1.54259 * 110.03321 * 67.83434 * 5 4 3 8 8 C 1.54890 * 104.19775 * 142.89752 * 7 5 4 9 9 C 1.54886 * 102.74482 * 322.05729 * 8 7 5 10 10 C 1.53875 * 110.03509 * 185.00211 * 5 4 3 11 11 H 1.09005 * 110.03404 * 121.37368 * 10 5 4 12 12 N 1.46509 * 110.02950 * 359.97438 * 10 5 4 13 13 S 1.65597 * 119.99845 * 145.00186 * 12 10 5 14 14 O 1.42109 * 104.27636 * 308.92713 * 13 12 10 15 15 O 1.42095 * 104.27718 * 181.06937 * 13 12 10 16 16 C 1.81400 * 104.45043 * 64.99555 * 13 12 10 17 17 C 1.53006 * 109.47145 * 179.97438 * 16 13 12 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 13 19 19 C 1.50696 * 109.47242 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99967 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00542 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00563 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99513 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46964 * 90.00276 * 23 21 19 25 25 H 1.48502 * 109.47035 * 210.00108 * 23 21 19 26 26 H 1.48499 * 109.47257 * 330.00183 * 23 21 19 27 27 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47756 * 300.00475 * 1 2 3 29 29 H 1.09003 * 109.46838 * 60.00073 * 1 2 3 30 30 H 1.09000 * 109.47467 * 239.99167 * 2 1 3 31 31 H 1.09003 * 109.46838 * 119.99927 * 2 1 3 32 32 H 1.09004 * 109.47318 * 59.99681 * 3 2 1 33 33 H 1.09003 * 109.47086 * 299.99775 * 3 2 1 34 34 H 1.08998 * 109.47071 * 60.00240 * 4 3 2 35 35 H 1.09003 * 109.47318 * 300.00162 * 4 3 2 36 36 H 1.09006 * 110.48627 * 261.57312 * 7 5 4 37 37 H 1.08996 * 110.48917 * 24.08669 * 7 5 4 38 38 H 1.09001 * 110.75679 * 80.37188 * 8 7 5 39 39 H 1.08997 * 110.75554 * 203.55681 * 8 7 5 40 40 H 1.09002 * 110.49082 * 279.26112 * 9 8 7 41 41 H 1.09005 * 110.48370 * 156.62124 * 9 8 7 42 42 H 0.96992 * 119.99895 * 324.99567 * 12 10 5 43 43 H 1.09001 * 109.46713 * 60.00077 * 16 13 12 44 44 H 1.08993 * 109.47294 * 299.99609 * 16 13 12 45 45 H 1.09001 * 109.46801 * 300.00406 * 17 16 13 46 46 H 1.09001 * 109.46998 * 60.00003 * 17 16 13 47 47 H 1.08996 * 109.46952 * 300.00302 * 18 17 16 48 48 H 1.09001 * 109.46832 * 60.00321 * 18 17 16 49 49 H 0.96999 * 120.00061 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6319 3.4402 -0.8228 7 6 3.7402 3.5650 1.3435 8 6 4.9684 4.4620 1.6366 9 6 6.1520 3.5916 1.1463 10 6 5.6136 2.9018 -0.1241 11 1 5.9097 3.4645 -1.0095 12 7 6.1256 1.5315 -0.2059 13 16 7.4441 1.1953 -1.1496 14 8 7.1265 1.7659 -2.4117 15 8 7.6303 -0.2060 -1.0051 16 6 8.8052 2.1025 -0.3654 17 6 10.0953 1.8687 -1.1541 18 6 11.2434 2.6334 -0.4923 19 6 12.5139 2.4036 -1.2695 20 1 12.5034 1.7753 -2.1479 21 6 13.6897 2.9954 -0.8593 22 7 14.7983 2.7952 -1.5378 23 14 13.7079 4.0815 0.6605 24 1 13.9976 3.2524 1.8579 25 1 14.7574 5.1217 0.5129 26 1 12.3832 4.7337 0.8187 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9286 0.8909 36 1 2.8394 4.1712 1.2467 37 1 3.6142 2.8189 2.1281 38 1 4.9118 5.3916 1.0702 39 1 5.0515 4.6662 2.7041 40 1 6.4179 2.8499 1.8995 41 1 7.0115 4.2173 0.9056 42 1 5.6922 0.8214 0.2927 43 1 8.9359 1.7488 0.6573 44 1 8.5735 3.1675 -0.3547 45 1 10.3268 0.8036 -1.1644 46 1 9.9648 2.2220 -2.1770 47 1 11.0120 3.6984 -0.4816 48 1 11.3736 2.2796 0.5304 49 1 15.6254 3.2119 -1.2494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068912797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:38 Heat of formation + Delta-G solvation = -140.427386 kcal Electronic energy + Delta-G solvation = -25334.642676 eV Core-core repulsion = 21807.077519 eV Total energy + Delta-G solvation = -3527.565157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.20888 -38.17144 -37.05109 -36.52165 -36.25082 -34.38543 -34.25376 -32.16819 -30.15623 -28.13906 -27.83560 -25.39587 -24.18247 -22.39019 -22.01145 -21.48304 -20.75424 -19.99170 -18.97414 -18.74380 -17.42585 -17.19257 -16.55351 -16.52374 -16.20213 -16.09899 -15.71942 -15.10520 -14.87689 -14.60038 -14.49623 -14.12350 -13.89769 -13.67459 -13.66449 -13.33825 -13.21430 -13.18421 -13.14809 -13.01147 -12.70043 -12.56818 -12.35753 -12.24902 -12.04376 -11.84992 -11.83688 -11.68857 -11.63543 -11.51804 -11.41771 -11.40116 -11.27428 -11.16634 -11.14290 -10.77858 -10.29418 -8.30089 -6.36156 -0.72646 1.36562 1.39310 1.50965 1.80404 2.36167 2.76305 3.04880 3.22676 3.53023 3.70374 3.73338 3.80199 3.92058 4.13468 4.16835 4.28075 4.32899 4.36016 4.44830 4.58088 4.58678 4.63920 4.65812 4.69540 4.82592 4.83992 4.88630 4.94229 4.95884 4.98909 5.03543 5.10378 5.21271 5.24432 5.29587 5.33064 5.34619 5.38601 5.45667 5.48136 5.54695 5.55288 5.60200 5.62252 6.14036 6.24920 6.72023 7.28360 8.86847 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.002851 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.369803 B = 9819.639538 C =10738.782501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.114 4.114 4 C -0.117 4.117 5 C -0.092 4.092 6 H 0.081 0.919 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.153 4.153 10 C 0.136 3.864 11 H 0.089 0.911 12 N -1.100 6.100 13 S 2.618 3.382 14 O -0.994 6.994 15 O -0.997 6.997 16 C -0.609 4.609 17 C -0.103 4.103 18 C -0.004 4.004 19 C -0.544 4.544 20 H 0.028 0.972 21 C -0.001 4.001 22 N -0.952 5.952 23 Si 0.956 3.044 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.237 1.237 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.425 0.575 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.499 2.402 11.079 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.152 4.152 4 C -0.155 4.155 5 C -0.112 4.112 6 H 0.099 0.901 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.192 4.192 10 C 0.029 3.971 11 H 0.107 0.893 12 N -0.863 5.863 13 S 2.714 3.286 14 O -0.984 6.984 15 O -0.987 6.987 16 C -0.740 4.740 17 C -0.143 4.143 18 C -0.042 4.042 19 C -0.582 4.582 20 H 0.047 0.953 21 C -0.198 4.198 22 N -0.593 5.593 23 Si 0.779 3.221 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.160 1.160 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.264 0.736 43 H 0.175 0.825 44 H 0.171 0.829 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -30.276 1.997 10.165 31.999 hybrid contribution 0.930 0.187 0.546 1.095 sum -29.346 2.184 10.711 31.316 Atomic orbital electron populations 1.21767 0.95491 1.01719 1.01943 1.21579 0.96265 0.97178 1.01780 1.21594 0.94620 0.96577 1.02384 1.21691 0.95879 0.95983 1.01982 1.21991 0.92658 0.96993 0.99537 0.90079 1.22430 0.98232 0.98625 0.95714 1.22445 0.93791 0.98043 1.01678 1.23082 0.99228 0.99763 0.97114 1.21772 0.95604 0.80438 0.99265 0.89302 1.55539 1.46376 1.17211 1.67146 1.04455 0.75697 0.73866 0.74604 1.93536 1.82979 1.80351 1.41541 1.93533 1.86553 1.31559 1.87057 1.30560 1.13186 1.16535 1.13742 1.21175 0.92953 1.01330 0.98804 1.19494 0.91989 0.96626 0.96134 1.21558 0.94225 1.30116 1.12316 0.95330 1.26143 0.94779 0.97984 1.00864 1.70088 1.00630 1.46218 1.42330 0.85573 0.79379 0.78554 0.78626 1.18997 1.21156 1.15993 0.92764 0.92238 0.92899 0.92967 0.91825 0.90882 0.92360 0.92844 0.90916 0.90644 0.90799 0.91004 0.90473 0.89672 0.90600 0.73614 0.82526 0.82898 0.92070 0.92031 0.94863 0.95054 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.89 16 2 C -0.13 -1.57 5.93 30.59 0.18 -1.39 16 3 C -0.11 -1.29 5.07 30.59 0.16 -1.14 16 4 C -0.12 -1.53 3.27 30.59 0.10 -1.43 16 5 C -0.09 -1.15 2.93 -10.07 -0.03 -1.18 16 6 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 7 C -0.11 -1.04 5.53 31.67 0.18 -0.87 16 8 C -0.12 -1.21 6.91 31.88 0.22 -0.99 16 9 C -0.15 -1.90 6.46 31.67 0.20 -1.70 16 10 C 0.14 2.12 3.45 45.71 0.16 2.28 16 11 H 0.09 1.55 7.52 -2.38 -0.02 1.53 16 12 N -1.10 -20.06 4.45 -166.36 -0.74 -20.80 16 13 S 2.62 71.53 5.44 -56.49 -0.31 71.23 16 14 O -0.99 -33.97 17.42 -127.65 -2.22 -36.20 16 15 O -1.00 -33.94 18.08 -127.65 -2.31 -36.25 16 16 C -0.61 -15.94 6.06 71.98 0.44 -15.50 16 17 C -0.10 -3.97 5.16 30.60 0.16 -3.81 16 18 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 19 C -0.54 -31.67 9.66 25.60 0.25 -31.42 16 20 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 21 C 0.00 -0.07 5.47 84.65 0.46 0.40 16 22 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 23 Si 0.96 43.12 27.47 68.60 1.88 45.01 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.68 7.51 -2.39 -0.02 0.67 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.88 7.53 -2.39 -0.02 0.87 16 35 H 0.07 0.81 7.04 -2.39 -0.02 0.79 16 36 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.07 0.63 7.76 -2.39 -0.02 0.61 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 0.97 8.05 -2.39 -0.02 0.95 16 41 H 0.08 0.94 7.64 -2.38 -0.02 0.92 16 42 H 0.42 6.38 6.49 -96.75 -0.63 5.76 16 43 H 0.16 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.15 3.21 7.58 -2.39 -0.02 3.19 16 45 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.03 1.41 7.20 -2.39 -0.02 1.40 16 48 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 49 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -77.04 391.45 0.12 -76.93 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.21 Total: 17.79 kcal Atomic # 6 Polarization: -61.01 SS G_CDS: 3.30 Total: -57.70 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -0.44 Total: -80.81 kcal Atomic # 8 Polarization: -67.91 SS G_CDS: -4.53 Total: -72.44 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.01 kcal Atomic # 16 Polarization: 71.53 SS G_CDS: -0.31 Total: 71.23 kcal Total: -77.04 0.12 -76.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068912797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.502 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds