Wall clock time and date at job start Tue Mar 31 2020 12:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.46976 * 2 1 4 4 C 1.53002 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47225 * 55.00228 * 4 3 2 6 6 C 1.53005 * 109.47044 * 294.99819 * 4 3 2 7 7 C 1.53002 * 109.47044 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47120 * 60.00062 * 7 6 4 9 9 C 1.52997 * 109.47309 * 299.99761 * 8 7 6 10 10 C 1.52997 * 109.47401 * 175.00125 * 4 3 2 11 11 H 1.09000 * 109.47395 * 300.00002 * 10 4 3 12 12 N 1.46507 * 109.47184 * 59.99682 * 10 4 3 13 13 S 1.65598 * 119.99849 * 215.00110 * 12 10 4 14 14 O 1.42097 * 104.27764 * 308.92774 * 13 12 10 15 15 O 1.42104 * 104.27651 * 181.07016 * 13 12 10 16 16 C 1.81399 * 104.45041 * 65.00207 * 13 12 10 17 17 C 1.52997 * 109.47147 * 179.97438 * 16 13 12 18 18 C 1.53006 * 109.47127 * 179.97438 * 17 16 13 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 H 1.08997 * 109.47499 * 60.00113 * 1 2 3 28 28 H 1.09004 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47311 * 299.99603 * 1 2 3 30 30 H 1.08999 * 109.47115 * 239.99951 * 2 1 3 31 31 H 1.09003 * 109.47097 * 119.99956 * 2 1 3 32 32 H 1.09001 * 109.47353 * 60.00552 * 3 2 1 33 33 H 1.09003 * 109.47171 * 299.99910 * 3 2 1 34 34 H 1.08998 * 109.47443 * 300.00275 * 6 4 3 35 35 H 1.09001 * 109.46950 * 60.00237 * 6 4 3 36 36 H 1.08999 * 109.46674 * 180.02562 * 7 6 4 37 37 H 1.09003 * 109.47046 * 299.99693 * 7 6 4 38 38 H 1.09007 * 109.46983 * 59.99924 * 8 7 6 39 39 H 1.09003 * 109.46992 * 179.97438 * 8 7 6 40 40 H 1.08994 * 109.47184 * 300.00331 * 9 8 7 41 41 H 1.09001 * 109.47148 * 179.97438 * 9 8 7 42 42 H 0.96998 * 119.99663 * 35.00640 * 12 10 4 43 43 H 1.09001 * 109.47190 * 59.99892 * 16 13 12 44 44 H 1.09004 * 109.47089 * 299.99759 * 16 13 12 45 45 H 1.09001 * 109.46832 * 60.00079 * 17 16 13 46 46 H 1.09001 * 109.47502 * 299.99601 * 17 16 13 47 47 H 1.09001 * 109.47002 * 60.00426 * 18 17 16 48 48 H 1.08993 * 109.46955 * 299.99989 * 18 17 16 49 49 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3065 7 6 5.6105 0.8322 1.3055 8 6 6.1209 2.2690 1.1795 9 6 5.6104 2.8787 -0.1276 10 6 4.0799 2.8795 -0.1263 11 1 3.7162 3.3140 -1.0575 12 7 3.5920 3.6716 1.0054 13 16 3.1981 5.2658 0.7916 14 8 4.3349 5.8243 0.1476 15 8 2.7984 5.7042 2.0829 16 6 1.7785 5.2338 -0.3372 17 6 1.3155 6.6654 -0.6151 18 6 0.1186 6.6385 -1.5678 19 6 -0.3378 8.0484 -1.8410 20 1 0.1749 8.8806 -1.3814 21 6 -1.4092 8.2762 -2.6784 22 7 -2.0332 7.2630 -3.2384 23 14 -1.9745 10.0240 -3.0176 24 1 -3.1363 9.9979 -3.9421 25 1 -0.8648 10.7916 -3.6379 26 1 -2.3720 10.6721 -1.7420 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7175 1.4220 2.1485 35 1 3.7173 -0.1911 1.3960 36 1 5.9742 0.3974 2.2365 37 1 5.9732 0.2425 0.4635 38 1 5.7583 2.8586 2.0216 39 1 7.2110 2.2686 1.1793 40 1 5.9730 2.2892 -0.9695 41 1 5.9737 3.9025 -0.2171 42 1 3.4998 3.2622 1.8799 43 1 0.9641 4.6711 0.1190 44 1 2.0695 4.7575 -1.2735 45 1 2.1298 7.2285 -1.0711 46 1 1.0244 7.1414 0.3213 47 1 -0.6959 6.0753 -1.1121 48 1 0.4101 6.1627 -2.5040 49 1 -1.7394 6.3554 -3.0625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068913438.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:31 Heat of formation + Delta-G solvation = -131.228167 kcal Electronic energy + Delta-G solvation = -26066.881129 eV Core-core repulsion = 22539.714880 eV Total energy + Delta-G solvation = -3527.166249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.85262 -36.90482 -35.77995 -35.19537 -34.91567 -33.77506 -32.28967 -31.02651 -29.61022 -27.48757 -26.12465 -23.49616 -23.14162 -22.28490 -21.08942 -20.71974 -20.08562 -18.88958 -17.71009 -16.95171 -16.23655 -15.91209 -15.49593 -15.45525 -15.25680 -14.55786 -14.38082 -14.20741 -13.75317 -13.52915 -13.32023 -13.23614 -13.08648 -12.60699 -12.41943 -12.13254 -12.05451 -12.02259 -11.86923 -11.82121 -11.64718 -11.48210 -11.42492 -11.31359 -11.14677 -10.84540 -10.81100 -10.80185 -10.75914 -10.53327 -10.18907 -10.12705 -10.08413 -9.79338 -9.36362 -8.58791 -8.37318 -6.41150 -4.10915 0.43512 2.83458 3.43513 3.45200 3.63769 3.90233 4.25180 4.31555 4.42992 4.50541 4.52146 4.75177 4.82084 4.89882 4.97310 5.00852 5.06026 5.08100 5.16123 5.22522 5.26608 5.34184 5.36955 5.42329 5.50547 5.54063 5.64833 5.67268 5.76485 5.78792 5.84558 5.86704 5.90017 6.00093 6.02679 6.08722 6.13781 6.15449 6.20104 6.26597 6.31620 6.71244 6.92919 7.26107 7.38354 8.13172 8.40952 8.82710 9.61272 10.99585 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.003465 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.363763 B = 8079.831826 C = 9340.629173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.091 4.091 5 H 0.083 0.917 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.138 4.138 10 C 0.159 3.841 11 H 0.084 0.916 12 N -1.115 6.115 13 S 2.600 3.400 14 O -0.959 6.959 15 O -0.965 6.965 16 C -0.613 4.613 17 C -0.098 4.098 18 C 0.018 3.982 19 C -0.607 4.607 20 H 0.051 0.949 21 C 0.016 3.984 22 N -0.912 5.912 23 Si 1.069 2.931 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.287 1.287 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.413 0.587 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.011 0.989 48 H 0.011 0.989 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.364 -17.872 8.095 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.111 4.111 5 H 0.101 0.899 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.177 4.177 10 C 0.052 3.948 11 H 0.102 0.898 12 N -0.874 5.874 13 S 2.696 3.304 14 O -0.949 6.949 15 O -0.955 6.955 16 C -0.745 4.745 17 C -0.137 4.137 18 C -0.020 4.020 19 C -0.646 4.646 20 H 0.070 0.930 21 C -0.188 4.188 22 N -0.548 5.548 23 Si 0.897 3.103 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.249 0.751 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.029 0.971 48 H 0.029 0.971 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.735 -16.167 7.499 21.904 hybrid contribution 0.603 -1.547 0.817 1.851 sum 13.338 -17.714 8.316 23.682 Atomic orbital electron populations 1.21799 0.95859 1.01460 1.02221 1.21554 0.95880 0.96785 1.01818 1.21739 0.94284 0.97115 1.02871 1.21450 0.95584 0.95086 0.98978 0.89887 1.21622 0.95470 1.00901 0.97303 1.21561 0.95591 0.97012 1.01608 1.21473 1.00068 0.95775 0.98216 1.22061 0.94906 1.02683 0.98066 1.20784 0.94151 0.91817 0.88086 0.89815 1.55798 1.82123 1.31279 1.18158 1.05284 0.76775 0.72712 0.75663 1.93570 1.47108 1.76167 1.78074 1.93577 1.84636 1.79462 1.37865 1.30599 1.19069 1.08612 1.16194 1.21343 1.01531 0.88704 1.02133 1.19174 0.91468 0.98098 0.93269 1.22073 1.18151 0.92156 1.32177 0.93025 1.25879 0.93766 1.05780 0.93365 1.70798 1.41358 1.00028 1.42586 0.83543 0.76370 0.73915 0.76484 1.20726 1.21315 1.21326 0.92492 0.92975 0.92692 0.92176 0.91964 0.91451 0.91461 0.91906 0.91494 0.92205 0.92011 0.91791 0.92120 0.91103 0.90060 0.75146 0.85390 0.85688 0.91467 0.91496 0.97064 0.97069 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.91 37.16 0.37 -0.94 16 2 C -0.12 -0.93 5.69 -26.74 -0.15 -1.08 16 3 C -0.12 -1.00 4.45 -26.73 -0.12 -1.12 16 4 C -0.09 -0.68 2.01 -90.62 -0.18 -0.86 16 5 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 6 C -0.12 -0.78 4.77 -26.73 -0.13 -0.91 16 7 C -0.12 -0.82 5.92 -26.73 -0.16 -0.97 16 8 C -0.12 -0.97 5.77 -26.74 -0.15 -1.12 16 9 C -0.14 -1.27 5.64 -26.70 -0.15 -1.42 16 10 C 0.16 1.46 2.33 -67.90 -0.16 1.30 16 11 H 0.08 0.76 7.15 -51.93 -0.37 0.38 16 12 N -1.11 -11.56 3.96 -4.86 -0.02 -11.58 16 13 S 2.60 37.70 5.38 -107.50 -0.58 37.12 16 14 O -0.96 -16.50 17.11 -57.54 -0.98 -17.48 16 15 O -0.97 -16.99 18.08 -57.54 -1.04 -18.03 16 16 C -0.61 -9.31 5.96 37.16 0.22 -9.09 16 17 C -0.10 -2.00 5.16 -26.73 -0.14 -2.14 16 18 C 0.02 0.46 4.28 -27.88 -0.12 0.34 16 19 C -0.61 -17.40 9.11 -34.44 -0.31 -17.71 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 21 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 22 N -0.91 -27.78 13.65 55.43 0.76 -27.02 16 23 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 32 H 0.07 0.57 7.76 -51.93 -0.40 0.16 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.44 6.51 -51.93 -0.34 0.10 16 35 H 0.07 0.41 6.57 -51.93 -0.34 0.07 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.92 7.43 -51.93 -0.39 0.53 16 42 H 0.41 3.68 6.78 -34.47 -0.23 3.45 16 43 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.12 1.66 7.44 -51.92 -0.39 1.28 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 48 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 49 H 0.27 8.06 7.22 -40.82 -0.29 7.76 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -34.74 386.35 -11.42 -46.16 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -9.01 Total: 0.09 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: -1.28 Total: -35.36 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.74 Total: -38.60 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -2.02 Total: -35.51 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Atomic # 16 Polarization: 37.70 SS G_CDS: -0.58 Total: 37.12 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.74 -11.42 -46.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068913438.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.069 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds