Wall clock time and date at job start Tue Mar 31 2020 12:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.46976 * 2 1 4 4 C 1.53002 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47225 * 55.00228 * 4 3 2 6 6 C 1.53005 * 109.47044 * 294.99819 * 4 3 2 7 7 C 1.53002 * 109.47044 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47120 * 60.00062 * 7 6 4 9 9 C 1.52997 * 109.47309 * 299.99761 * 8 7 6 10 10 C 1.52997 * 109.47401 * 175.00125 * 4 3 2 11 11 H 1.09000 * 109.47395 * 300.00002 * 10 4 3 12 12 N 1.46507 * 109.47184 * 59.99682 * 10 4 3 13 13 S 1.65598 * 119.99849 * 215.00110 * 12 10 4 14 14 O 1.42097 * 104.27764 * 308.92774 * 13 12 10 15 15 O 1.42104 * 104.27651 * 181.07016 * 13 12 10 16 16 C 1.81399 * 104.45041 * 65.00207 * 13 12 10 17 17 C 1.52997 * 109.47147 * 179.97438 * 16 13 12 18 18 C 1.53006 * 109.47127 * 179.97438 * 17 16 13 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 H 1.08997 * 109.47499 * 60.00113 * 1 2 3 28 28 H 1.09004 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47311 * 299.99603 * 1 2 3 30 30 H 1.08999 * 109.47115 * 239.99951 * 2 1 3 31 31 H 1.09003 * 109.47097 * 119.99956 * 2 1 3 32 32 H 1.09001 * 109.47353 * 60.00552 * 3 2 1 33 33 H 1.09003 * 109.47171 * 299.99910 * 3 2 1 34 34 H 1.08998 * 109.47443 * 300.00275 * 6 4 3 35 35 H 1.09001 * 109.46950 * 60.00237 * 6 4 3 36 36 H 1.08999 * 109.46674 * 180.02562 * 7 6 4 37 37 H 1.09003 * 109.47046 * 299.99693 * 7 6 4 38 38 H 1.09007 * 109.46983 * 59.99924 * 8 7 6 39 39 H 1.09003 * 109.46992 * 179.97438 * 8 7 6 40 40 H 1.08994 * 109.47184 * 300.00331 * 9 8 7 41 41 H 1.09001 * 109.47148 * 179.97438 * 9 8 7 42 42 H 0.96998 * 119.99663 * 35.00640 * 12 10 4 43 43 H 1.09001 * 109.47190 * 59.99892 * 16 13 12 44 44 H 1.09004 * 109.47089 * 299.99759 * 16 13 12 45 45 H 1.09001 * 109.46832 * 60.00079 * 17 16 13 46 46 H 1.09001 * 109.47502 * 299.99601 * 17 16 13 47 47 H 1.09001 * 109.47002 * 60.00426 * 18 17 16 48 48 H 1.08993 * 109.46955 * 299.99989 * 18 17 16 49 49 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3065 7 6 5.6105 0.8322 1.3055 8 6 6.1209 2.2690 1.1795 9 6 5.6104 2.8787 -0.1276 10 6 4.0799 2.8795 -0.1263 11 1 3.7162 3.3140 -1.0575 12 7 3.5920 3.6716 1.0054 13 16 3.1981 5.2658 0.7916 14 8 4.3349 5.8243 0.1476 15 8 2.7984 5.7042 2.0829 16 6 1.7785 5.2338 -0.3372 17 6 1.3155 6.6654 -0.6151 18 6 0.1186 6.6385 -1.5678 19 6 -0.3378 8.0484 -1.8410 20 1 0.1749 8.8806 -1.3814 21 6 -1.4092 8.2762 -2.6784 22 7 -2.0332 7.2630 -3.2384 23 14 -1.9745 10.0240 -3.0176 24 1 -3.1363 9.9979 -3.9421 25 1 -0.8648 10.7916 -3.6379 26 1 -2.3720 10.6721 -1.7420 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7175 1.4220 2.1485 35 1 3.7173 -0.1911 1.3960 36 1 5.9742 0.3974 2.2365 37 1 5.9732 0.2425 0.4635 38 1 5.7583 2.8586 2.0216 39 1 7.2110 2.2686 1.1793 40 1 5.9730 2.2892 -0.9695 41 1 5.9737 3.9025 -0.2171 42 1 3.4998 3.2622 1.8799 43 1 0.9641 4.6711 0.1190 44 1 2.0695 4.7575 -1.2735 45 1 2.1298 7.2285 -1.0711 46 1 1.0244 7.1414 0.3213 47 1 -0.6959 6.0753 -1.1121 48 1 0.4101 6.1627 -2.5040 49 1 -1.7394 6.3554 -3.0625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068913438.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:30 Heat of formation + Delta-G solvation = -153.058666 kcal Electronic energy + Delta-G solvation = -26067.827770 eV Core-core repulsion = 22539.714880 eV Total energy + Delta-G solvation = -3528.112891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.53132 -38.21365 -37.09940 -36.79443 -35.82755 -34.55694 -34.24501 -31.65658 -30.33955 -29.32893 -26.78135 -25.48452 -23.79418 -22.97672 -22.75576 -21.39383 -20.97130 -19.87657 -19.11186 -18.68676 -17.32957 -17.21355 -16.46113 -16.20405 -16.09908 -15.67419 -15.67021 -15.32809 -15.22206 -14.95975 -14.13220 -13.94927 -13.93003 -13.83745 -13.68616 -13.40058 -13.24417 -13.16047 -13.15634 -13.02092 -12.81470 -12.61294 -12.54005 -12.41206 -12.14270 -11.95786 -11.92589 -11.89010 -11.78353 -11.59223 -11.42167 -11.33899 -11.18106 -10.78846 -10.68425 -10.57103 -10.22314 -8.72142 -6.43174 -0.78637 1.51964 1.59811 1.75711 1.79512 2.54197 2.69721 3.12494 3.17533 3.56482 3.64480 3.79366 3.80822 3.85468 4.14446 4.18864 4.23113 4.27088 4.32638 4.39761 4.45420 4.50890 4.60162 4.65825 4.67804 4.77435 4.81584 4.84355 4.87468 4.90531 5.04330 5.07127 5.17402 5.23141 5.24433 5.24953 5.28372 5.35827 5.37209 5.41946 5.45678 5.49905 5.58010 5.65500 5.94298 6.12018 6.14797 6.54400 7.37753 8.69374 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.003465 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.363763 B = 8079.831826 C = 9340.629173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.119 4.119 3 C -0.127 4.127 4 C -0.082 4.082 5 H 0.097 0.903 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.119 4.119 9 C -0.139 4.139 10 C 0.150 3.850 11 H 0.086 0.914 12 N -1.098 6.098 13 S 2.628 3.372 14 O -0.985 6.985 15 O -0.995 6.995 16 C -0.613 4.613 17 C -0.099 4.099 18 C 0.016 3.984 19 C -0.630 4.630 20 H 0.050 0.950 21 C -0.036 4.036 22 N -0.935 5.935 23 Si 1.115 2.885 24 H -0.281 1.281 25 H -0.269 1.269 26 H -0.270 1.270 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.423 0.577 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.065 0.935 46 H 0.063 0.937 47 H -0.001 1.001 48 H 0.001 0.999 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.182 -19.025 8.446 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.156 4.156 3 C -0.164 4.164 4 C -0.102 4.102 5 H 0.115 0.885 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.157 4.157 9 C -0.178 4.178 10 C 0.043 3.957 11 H 0.104 0.896 12 N -0.860 5.860 13 S 2.722 3.278 14 O -0.975 6.975 15 O -0.986 6.986 16 C -0.743 4.743 17 C -0.138 4.138 18 C -0.022 4.022 19 C -0.668 4.668 20 H 0.069 0.931 21 C -0.234 4.234 22 N -0.572 5.572 23 Si 0.936 3.064 24 H -0.206 1.206 25 H -0.194 1.194 26 H -0.195 1.195 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.261 0.739 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.564 -17.331 7.866 23.371 hybrid contribution 0.387 -1.263 0.712 1.501 sum 13.952 -18.594 8.578 24.778 Atomic orbital electron populations 1.21827 0.96750 1.01707 1.01367 1.21529 0.95042 0.96408 1.02647 1.21771 0.94820 0.97550 1.02276 1.21396 0.94947 0.93784 1.00052 0.88502 1.21643 0.95516 1.01494 0.96647 1.21527 0.95434 0.95893 1.02409 1.21492 1.00369 0.96674 0.97176 1.22062 0.94703 1.01661 0.99403 1.21052 0.94409 0.92791 0.87469 0.89631 1.55401 1.81487 1.29864 1.19257 1.04260 0.75801 0.73357 0.74369 1.93540 1.47974 1.77519 1.78455 1.93531 1.84953 1.80802 1.39270 1.30549 1.20256 1.05546 1.17928 1.21166 0.99654 0.92246 1.00714 1.19112 0.92977 0.96247 0.93835 1.22566 1.18347 0.93809 1.32088 0.93125 1.27404 0.93958 1.09044 0.92946 1.70921 1.42288 1.00034 1.43931 0.82967 0.76528 0.69686 0.77242 1.20625 1.19402 1.19474 0.93710 0.92218 0.93191 0.91554 0.90852 0.91843 0.92367 0.92146 0.90257 0.91476 0.91114 0.92817 0.91767 0.89408 0.92516 0.73904 0.83707 0.83721 0.91661 0.91858 0.98237 0.98089 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.91 71.98 0.71 -1.77 16 2 C -0.12 -1.54 5.69 30.59 0.17 -1.36 16 3 C -0.13 -1.83 4.45 30.59 0.14 -1.69 16 4 C -0.08 -1.02 2.01 -10.79 -0.02 -1.04 16 5 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 6 C -0.12 -1.24 4.77 30.60 0.15 -1.10 16 7 C -0.12 -1.24 5.92 30.59 0.18 -1.06 16 8 C -0.12 -1.75 5.77 30.59 0.18 -1.58 16 9 C -0.14 -2.35 5.64 30.61 0.17 -2.18 16 10 C 0.15 2.49 2.33 45.01 0.10 2.60 16 11 H 0.09 1.41 7.15 -2.39 -0.02 1.39 16 12 N -1.10 -21.41 3.96 -169.30 -0.67 -22.09 16 13 S 2.63 74.77 5.38 -56.49 -0.30 74.47 16 14 O -0.99 -33.64 17.11 -127.65 -2.18 -35.82 16 15 O -1.00 -34.67 18.08 -127.65 -2.31 -36.98 16 16 C -0.61 -18.23 5.96 71.98 0.43 -17.80 16 17 C -0.10 -4.07 5.16 30.60 0.16 -3.91 16 18 C 0.02 0.85 4.28 29.85 0.13 0.97 16 19 C -0.63 -36.50 9.11 25.60 0.23 -36.26 16 20 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 21 C -0.04 -2.08 5.46 84.65 0.46 -1.62 16 22 N -0.93 -57.66 13.65 21.45 0.29 -57.37 16 23 Si 1.11 50.58 29.90 68.60 2.05 52.63 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.80 6.57 -2.39 -0.02 0.78 16 32 H 0.06 0.96 7.76 -2.39 -0.02 0.94 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.69 6.51 -2.39 -0.02 0.67 16 35 H 0.08 0.70 6.57 -2.39 -0.02 0.69 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.89 7.45 -2.38 -0.02 0.87 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.25 7.43 -2.39 -0.02 1.23 16 42 H 0.42 6.90 6.78 -96.75 -0.66 6.24 16 43 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 44 H 0.14 3.70 7.44 -2.39 -0.02 3.69 16 45 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.00 -0.04 8.01 -2.39 -0.02 -0.06 16 48 H 0.00 0.04 8.01 -2.39 -0.02 0.02 16 49 H 0.26 15.88 7.22 -92.71 -0.67 15.21 16 Total: -1.00 -74.68 386.35 0.42 -74.27 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.35 Total: 18.68 kcal Atomic # 6 Polarization: -70.98 SS G_CDS: 3.19 Total: -67.79 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -0.38 Total: -79.45 kcal Atomic # 8 Polarization: -68.31 SS G_CDS: -4.49 Total: -72.80 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Atomic # 16 Polarization: 74.77 SS G_CDS: -0.30 Total: 74.47 kcal Total: -74.68 0.42 -74.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068913438.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.793 kcal (2) G-P(sol) polarization free energy of solvation -74.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds