Wall clock time and date at job start Tue Mar 31 2020 12:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47481 * 2 1 4 4 C 1.53000 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46767 * 304.99845 * 4 3 2 6 6 C 1.52998 * 109.47002 * 64.99838 * 4 3 2 7 7 C 1.53003 * 109.47150 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47044 * 299.99783 * 7 6 4 9 9 C 1.52998 * 109.46970 * 60.00107 * 8 7 6 10 10 C 1.53001 * 109.47401 * 184.99750 * 4 3 2 11 11 H 1.08997 * 109.47238 * 299.99807 * 10 4 3 12 12 N 1.46500 * 109.46859 * 60.00168 * 10 4 3 13 13 S 1.65606 * 119.99825 * 214.99858 * 12 10 4 14 14 O 1.42097 * 104.27560 * 308.93171 * 13 12 10 15 15 O 1.42091 * 104.27561 * 181.06907 * 13 12 10 16 16 C 1.81407 * 104.44700 * 64.99932 * 13 12 10 17 17 C 1.52996 * 109.46799 * 180.02562 * 16 13 12 18 18 C 1.52998 * 109.46929 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.47348 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 H 1.08998 * 109.46904 * 300.00174 * 1 2 3 28 28 H 1.08997 * 109.46880 * 59.99556 * 1 2 3 29 29 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46966 * 239.99361 * 2 1 3 31 31 H 1.09004 * 109.47157 * 120.00152 * 2 1 3 32 32 H 1.09003 * 109.47543 * 59.99714 * 3 2 1 33 33 H 1.09004 * 109.47049 * 300.00219 * 3 2 1 34 34 H 1.09006 * 109.47194 * 300.00231 * 6 4 3 35 35 H 1.08997 * 109.47354 * 60.00366 * 6 4 3 36 36 H 1.08997 * 109.46976 * 59.99788 * 7 6 4 37 37 H 1.09003 * 109.47418 * 180.02562 * 7 6 4 38 38 H 1.08998 * 109.46963 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.46840 * 299.99951 * 8 7 6 40 40 H 1.09001 * 109.47059 * 180.02562 * 9 8 7 41 41 H 1.08997 * 109.47354 * 59.99809 * 9 8 7 42 42 H 0.96998 * 120.00233 * 34.99977 * 12 10 4 43 43 H 1.09000 * 109.46876 * 60.00006 * 16 13 12 44 44 H 1.09002 * 109.47096 * 299.99793 * 16 13 12 45 45 H 1.09000 * 109.47441 * 60.00303 * 17 16 13 46 46 H 1.09002 * 109.47087 * 299.99749 * 17 16 13 47 47 H 1.09001 * 109.47671 * 60.00109 * 18 17 16 48 48 H 1.09006 * 109.47297 * 299.99829 * 18 17 16 49 49 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0795 0.8329 -1.3083 7 6 5.6095 0.8323 -1.3087 8 6 6.1201 2.2691 -1.1828 9 6 5.6107 2.8786 0.1249 10 6 4.0802 2.8794 0.1250 11 1 3.7166 3.4689 -0.7166 12 7 3.5924 3.4629 1.3771 13 16 3.1987 5.0701 1.4435 14 8 4.3355 5.7319 0.9060 15 8 2.7992 5.2776 2.7912 16 6 1.7790 5.2348 0.3261 17 6 1.3171 6.6931 0.3002 18 6 0.1194 6.8319 -0.6417 19 6 -0.3362 8.2682 -0.6669 20 1 0.1770 9.0080 -0.0704 21 6 -1.4080 8.6379 -1.4514 22 7 -2.0333 7.7370 -2.1773 23 14 -1.9730 10.4181 -1.4820 24 1 -3.1347 10.5531 -2.3972 25 1 -2.3696 10.8352 -0.1130 26 1 -0.8635 11.2814 -1.9606 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7160 -0.1909 -1.3978 35 1 3.7159 1.4225 -2.1499 36 1 5.9728 0.2425 -0.4671 37 1 5.9725 0.3985 -2.2405 38 1 7.2101 2.2687 -1.1835 39 1 5.7567 2.8589 -2.0244 40 1 5.9740 3.9023 0.2144 41 1 5.9740 2.2888 0.9664 42 1 3.5001 2.9080 2.1673 43 1 0.9646 4.6014 0.6778 44 1 2.0700 4.9283 -0.6786 45 1 2.1317 7.3261 -0.0517 46 1 1.0262 7.0001 1.3048 47 1 -0.6952 6.1990 -0.2895 48 1 0.4097 6.5248 -1.6465 49 1 -1.7400 6.8125 -2.1611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068913443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:35 Heat of formation + Delta-G solvation = -134.195770 kcal Electronic energy + Delta-G solvation = -25931.677655 eV Core-core repulsion = 22404.382721 eV Total energy + Delta-G solvation = -3527.294934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.65178 -36.91800 -35.79755 -35.14076 -34.92127 -34.41727 -32.29292 -31.03267 -29.17612 -27.49381 -26.13087 -23.47955 -23.11462 -22.06867 -21.11961 -20.73906 -20.27287 -19.14062 -17.49804 -16.98074 -16.66523 -15.84672 -15.49349 -15.45049 -14.84417 -14.50983 -14.35959 -14.14986 -13.76333 -13.63996 -13.50549 -13.28358 -13.11986 -12.80110 -12.15728 -12.07407 -12.04976 -12.02520 -11.88983 -11.83378 -11.64952 -11.49146 -11.42395 -11.31829 -11.14262 -10.91631 -10.81638 -10.80854 -10.72691 -10.61848 -10.24070 -10.13031 -10.09844 -9.79428 -9.36774 -8.58883 -8.37293 -6.41156 -4.10934 0.41774 2.80278 3.43528 3.45212 3.63785 3.88726 4.22503 4.31979 4.44167 4.51788 4.53345 4.74178 4.81109 4.88278 4.94925 4.98895 5.04243 5.06477 5.16728 5.20675 5.26099 5.34844 5.36972 5.41359 5.50361 5.55434 5.63745 5.67897 5.76511 5.79362 5.83474 5.87842 5.90121 5.98088 6.01956 6.06154 6.13620 6.14966 6.19862 6.26569 6.31619 6.70942 6.90430 7.25952 7.38147 8.13028 8.40891 8.82646 9.61269 10.99554 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.003471 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.006880 B = 8065.987886 C = 8926.756831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.124 4.124 4 C -0.090 4.090 5 H 0.077 0.923 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.137 4.137 10 C 0.159 3.841 11 H 0.083 0.917 12 N -1.118 6.118 13 S 2.600 3.400 14 O -0.959 6.959 15 O -0.964 6.964 16 C -0.613 4.613 17 C -0.098 4.098 18 C 0.018 3.982 19 C -0.607 4.607 20 H 0.051 0.949 21 C 0.016 3.984 22 N -0.912 5.912 23 Si 1.069 2.931 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.287 1.287 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.414 0.586 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.011 0.989 48 H 0.011 0.989 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -18.876 3.245 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.161 4.161 4 C -0.110 4.110 5 H 0.095 0.905 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.158 4.158 9 C -0.177 4.177 10 C 0.051 3.949 11 H 0.101 0.899 12 N -0.875 5.875 13 S 2.696 3.304 14 O -0.949 6.949 15 O -0.955 6.955 16 C -0.744 4.744 17 C -0.137 4.137 18 C -0.020 4.020 19 C -0.645 4.645 20 H 0.070 0.930 21 C -0.188 4.188 22 N -0.548 5.548 23 Si 0.897 3.103 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.248 0.752 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.029 0.971 48 H 0.029 0.971 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.734 -17.080 2.963 21.510 hybrid contribution 0.607 -1.671 0.576 1.868 sum 13.341 -18.751 3.539 23.283 Atomic orbital electron populations 1.21798 0.95844 1.01464 1.02234 1.21551 0.95888 0.96752 1.01823 1.21754 0.94301 0.97186 1.02894 1.21461 0.95584 0.95087 0.98907 0.90462 1.21644 0.95445 1.01207 0.97064 1.21577 0.95614 0.96955 1.01729 1.21531 1.00512 0.95973 0.97765 1.22087 0.94839 1.02703 0.98031 1.20817 0.94144 0.94792 0.85108 0.89897 1.55789 1.82229 1.30466 1.19018 1.05289 0.76796 0.72715 0.75611 1.93571 1.47143 1.72984 1.81207 1.93577 1.84627 1.83904 1.33361 1.30596 1.19018 1.08588 1.16246 1.21345 1.01550 0.88112 1.02704 1.19177 0.91453 0.97946 0.93446 1.22072 1.18132 0.93840 1.30504 0.93023 1.25877 0.93751 1.06174 0.92968 1.70801 1.41335 1.03686 1.38940 0.83543 0.76372 0.74012 0.76389 1.20721 1.21322 1.21323 0.92653 0.92518 0.92957 0.91875 0.92258 0.91393 0.91472 0.91291 0.91525 0.92022 0.91954 0.91698 0.91606 0.90085 0.91528 0.75216 0.85369 0.85695 0.91437 0.91470 0.97051 0.97065 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.91 37.16 0.37 -0.94 16 2 C -0.12 -0.93 5.69 -26.74 -0.15 -1.08 16 3 C -0.12 -1.03 4.60 -26.74 -0.12 -1.16 16 4 C -0.09 -0.70 1.82 -90.62 -0.17 -0.86 16 5 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 6 C -0.12 -0.81 4.96 -26.73 -0.13 -0.95 16 7 C -0.12 -0.83 5.92 -26.73 -0.16 -0.98 16 8 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 9 C -0.14 -1.31 5.53 -26.71 -0.15 -1.45 16 10 C 0.16 1.51 2.00 -67.90 -0.14 1.38 16 11 H 0.08 0.81 7.15 -51.93 -0.37 0.44 16 12 N -1.12 -11.69 4.51 -4.87 -0.02 -11.72 16 13 S 2.60 38.07 5.38 -107.50 -0.58 37.49 16 14 O -0.96 -16.67 17.11 -57.54 -0.98 -17.65 16 15 O -0.96 -17.04 18.08 -57.54 -1.04 -18.08 16 16 C -0.61 -9.39 5.96 37.16 0.22 -9.17 16 17 C -0.10 -2.01 5.16 -26.73 -0.14 -2.14 16 18 C 0.02 0.46 4.28 -27.88 -0.12 0.34 16 19 C -0.61 -17.39 9.11 -34.44 -0.31 -17.70 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 21 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 22 N -0.91 -27.76 13.65 55.43 0.76 -27.01 16 23 Si 1.07 25.35 29.90 -169.99 -5.08 20.27 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.59 7.45 -51.93 -0.39 0.20 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.94 7.43 -51.93 -0.39 0.55 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.41 3.55 8.80 -34.47 -0.30 3.25 16 43 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.12 1.69 7.44 -51.92 -0.39 1.30 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 48 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 49 H 0.27 8.06 7.22 -40.82 -0.29 7.76 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -34.73 390.80 -11.50 -46.23 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -9.19 Total: 0.05 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: -1.25 Total: -35.47 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.73 Total: -38.72 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -2.02 Total: -35.73 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Atomic # 16 Polarization: 38.07 SS G_CDS: -0.58 Total: 37.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.73 -11.50 -46.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068913443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.962 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds