Wall clock time and date at job start Tue Mar 31 2020 12:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47481 * 2 1 4 4 C 1.53000 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46767 * 304.99845 * 4 3 2 6 6 C 1.52998 * 109.47002 * 64.99838 * 4 3 2 7 7 C 1.53003 * 109.47150 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47044 * 299.99783 * 7 6 4 9 9 C 1.52998 * 109.46970 * 60.00107 * 8 7 6 10 10 C 1.53001 * 109.47401 * 184.99750 * 4 3 2 11 11 H 1.08997 * 109.47238 * 299.99807 * 10 4 3 12 12 N 1.46500 * 109.46859 * 60.00168 * 10 4 3 13 13 S 1.65606 * 119.99825 * 214.99858 * 12 10 4 14 14 O 1.42097 * 104.27560 * 308.93171 * 13 12 10 15 15 O 1.42091 * 104.27561 * 181.06907 * 13 12 10 16 16 C 1.81407 * 104.44700 * 64.99932 * 13 12 10 17 17 C 1.52996 * 109.46799 * 180.02562 * 16 13 12 18 18 C 1.52998 * 109.46929 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.47348 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 H 1.08998 * 109.46904 * 300.00174 * 1 2 3 28 28 H 1.08997 * 109.46880 * 59.99556 * 1 2 3 29 29 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46966 * 239.99361 * 2 1 3 31 31 H 1.09004 * 109.47157 * 120.00152 * 2 1 3 32 32 H 1.09003 * 109.47543 * 59.99714 * 3 2 1 33 33 H 1.09004 * 109.47049 * 300.00219 * 3 2 1 34 34 H 1.09006 * 109.47194 * 300.00231 * 6 4 3 35 35 H 1.08997 * 109.47354 * 60.00366 * 6 4 3 36 36 H 1.08997 * 109.46976 * 59.99788 * 7 6 4 37 37 H 1.09003 * 109.47418 * 180.02562 * 7 6 4 38 38 H 1.08998 * 109.46963 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.46840 * 299.99951 * 8 7 6 40 40 H 1.09001 * 109.47059 * 180.02562 * 9 8 7 41 41 H 1.08997 * 109.47354 * 59.99809 * 9 8 7 42 42 H 0.96998 * 120.00233 * 34.99977 * 12 10 4 43 43 H 1.09000 * 109.46876 * 60.00006 * 16 13 12 44 44 H 1.09002 * 109.47096 * 299.99793 * 16 13 12 45 45 H 1.09000 * 109.47441 * 60.00303 * 17 16 13 46 46 H 1.09002 * 109.47087 * 299.99749 * 17 16 13 47 47 H 1.09001 * 109.47671 * 60.00109 * 18 17 16 48 48 H 1.09006 * 109.47297 * 299.99829 * 18 17 16 49 49 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0795 0.8329 -1.3083 7 6 5.6095 0.8323 -1.3087 8 6 6.1201 2.2691 -1.1828 9 6 5.6107 2.8786 0.1249 10 6 4.0802 2.8794 0.1250 11 1 3.7166 3.4689 -0.7166 12 7 3.5924 3.4629 1.3771 13 16 3.1987 5.0701 1.4435 14 8 4.3355 5.7319 0.9060 15 8 2.7992 5.2776 2.7912 16 6 1.7790 5.2348 0.3261 17 6 1.3171 6.6931 0.3002 18 6 0.1194 6.8319 -0.6417 19 6 -0.3362 8.2682 -0.6669 20 1 0.1770 9.0080 -0.0704 21 6 -1.4080 8.6379 -1.4514 22 7 -2.0333 7.7370 -2.1773 23 14 -1.9730 10.4181 -1.4820 24 1 -3.1347 10.5531 -2.3972 25 1 -2.3696 10.8352 -0.1130 26 1 -0.8635 11.2814 -1.9606 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7160 -0.1909 -1.3978 35 1 3.7159 1.4225 -2.1499 36 1 5.9728 0.2425 -0.4671 37 1 5.9725 0.3985 -2.2405 38 1 7.2101 2.2687 -1.1835 39 1 5.7567 2.8589 -2.0244 40 1 5.9740 3.9023 0.2144 41 1 5.9740 2.2888 0.9664 42 1 3.5001 2.9080 2.1673 43 1 0.9646 4.6014 0.6778 44 1 2.0700 4.9283 -0.6786 45 1 2.1317 7.3261 -0.0517 46 1 1.0262 7.0001 1.3048 47 1 -0.6952 6.1990 -0.2895 48 1 0.4097 6.5248 -1.6465 49 1 -1.7400 6.8125 -2.1611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068913443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:34 Heat of formation + Delta-G solvation = -156.217660 kcal Electronic energy + Delta-G solvation = -25932.632596 eV Core-core repulsion = 22404.382721 eV Total energy + Delta-G solvation = -3528.249875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.34393 -38.23444 -37.12718 -36.80076 -35.78111 -35.22072 -34.25806 -31.67344 -29.91503 -29.34106 -26.80007 -25.48878 -23.77863 -22.85038 -22.73158 -21.39764 -21.04201 -20.27510 -19.11425 -18.48195 -17.71392 -17.22716 -16.62833 -16.11925 -15.89464 -15.67353 -15.39161 -15.34004 -15.17311 -14.93040 -14.32497 -14.16341 -13.94698 -13.86627 -13.69779 -13.48536 -13.26899 -13.19626 -13.18459 -12.99995 -12.78102 -12.62178 -12.55083 -12.26818 -12.14199 -11.95867 -11.94244 -11.89207 -11.78721 -11.64774 -11.45865 -11.35558 -11.25701 -10.89126 -10.68962 -10.57199 -10.23622 -8.72275 -6.43331 -0.81343 1.51980 1.59847 1.71659 1.79548 2.54075 2.67098 3.12370 3.15107 3.53057 3.60978 3.77226 3.79294 3.88448 4.12737 4.13544 4.21009 4.24279 4.30817 4.37093 4.44442 4.49562 4.55671 4.62096 4.65131 4.77204 4.78786 4.83094 4.86144 4.91966 5.02483 5.06712 5.16603 5.23030 5.23253 5.25193 5.28485 5.34185 5.35148 5.39914 5.42343 5.48414 5.56239 5.64005 5.93920 6.11087 6.14517 6.54041 7.37679 8.69165 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.003471 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.006880 B = 8065.987886 C = 8926.756831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.119 4.119 3 C -0.128 4.128 4 C -0.081 4.081 5 H 0.091 0.909 6 C -0.115 4.115 7 C -0.117 4.117 8 C -0.120 4.120 9 C -0.138 4.138 10 C 0.150 3.850 11 H 0.079 0.921 12 N -1.100 6.100 13 S 2.628 3.372 14 O -0.986 6.986 15 O -0.993 6.993 16 C -0.613 4.613 17 C -0.099 4.099 18 C 0.016 3.984 19 C -0.630 4.630 20 H 0.051 0.949 21 C -0.035 4.035 22 N -0.934 5.934 23 Si 1.115 2.885 24 H -0.281 1.281 25 H -0.269 1.269 26 H -0.269 1.269 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.426 0.574 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.000 1.000 48 H 0.000 1.000 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.221 -20.095 3.545 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.101 4.101 5 H 0.109 0.891 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.158 4.158 9 C -0.177 4.177 10 C 0.044 3.956 11 H 0.097 0.903 12 N -0.861 5.861 13 S 2.722 3.278 14 O -0.975 6.975 15 O -0.983 6.983 16 C -0.743 4.743 17 C -0.138 4.138 18 C -0.022 4.022 19 C -0.668 4.668 20 H 0.069 0.931 21 C -0.233 4.233 22 N -0.572 5.572 23 Si 0.936 3.064 24 H -0.206 1.206 25 H -0.194 1.194 26 H -0.194 1.194 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.263 0.737 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.596 -18.313 3.279 23.042 hybrid contribution 0.376 -1.363 0.473 1.491 sum 13.972 -19.676 3.752 24.422 Atomic orbital electron populations 1.21827 0.96677 1.01764 1.01389 1.21527 0.95105 0.96262 1.02705 1.21790 0.94787 0.97729 1.02259 1.21405 0.95006 0.93739 0.99962 0.89082 1.21660 0.95688 1.01714 0.96253 1.21553 0.95271 0.95990 1.02612 1.21543 1.00951 0.96747 0.96566 1.22075 0.94579 1.01626 0.99420 1.21052 0.94434 0.95972 0.84188 0.90299 1.55372 1.81573 1.28978 1.20189 1.04256 0.75797 0.73406 0.74292 1.93541 1.48023 1.74497 1.81472 1.93533 1.84920 1.84970 1.34914 1.30550 1.20277 1.05419 1.18074 1.21168 0.99671 0.91729 1.01202 1.19117 0.92971 0.96142 0.93969 1.22561 1.18330 0.95559 1.30334 0.93099 1.27404 0.93935 1.09736 0.92240 1.70924 1.42266 1.03578 1.40389 0.82965 0.76525 0.69556 0.77365 1.20617 1.19449 1.19425 0.93317 0.93561 0.92120 0.91029 0.91264 0.91789 0.92461 0.89999 0.92172 0.91126 0.91062 0.91050 0.92314 0.92517 0.90400 0.73673 0.83650 0.83941 0.91634 0.91733 0.98208 0.98153 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.91 71.98 0.71 -1.77 16 2 C -0.12 -1.55 5.69 30.59 0.17 -1.38 16 3 C -0.13 -1.92 4.60 30.59 0.14 -1.77 16 4 C -0.08 -1.06 1.82 -10.79 -0.02 -1.08 16 5 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 6 C -0.12 -1.34 4.96 30.59 0.15 -1.19 16 7 C -0.12 -1.28 5.92 30.60 0.18 -1.10 16 8 C -0.12 -1.73 5.92 30.59 0.18 -1.54 16 9 C -0.14 -2.43 5.53 30.61 0.17 -2.26 16 10 C 0.15 2.64 2.00 45.01 0.09 2.73 16 11 H 0.08 1.46 7.15 -2.39 -0.02 1.45 16 12 N -1.10 -21.44 4.51 -169.32 -0.76 -22.20 16 13 S 2.63 75.33 5.38 -56.49 -0.30 75.02 16 14 O -0.99 -34.02 17.11 -127.65 -2.18 -36.20 16 15 O -0.99 -34.51 18.08 -127.65 -2.31 -36.82 16 16 C -0.61 -18.49 5.96 71.98 0.43 -18.06 16 17 C -0.10 -4.08 5.16 30.59 0.16 -3.92 16 18 C 0.02 0.83 4.28 29.85 0.13 0.96 16 19 C -0.63 -36.50 9.11 25.60 0.23 -36.27 16 20 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 21 C -0.04 -2.06 5.46 84.65 0.46 -1.60 16 22 N -0.93 -57.69 13.65 21.45 0.29 -57.40 16 23 Si 1.12 50.58 29.90 68.60 2.05 52.63 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.82 6.56 -2.39 -0.02 0.81 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 1.00 7.45 -2.39 -0.02 0.98 16 33 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 0.78 6.56 -2.38 -0.02 0.76 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 1.29 7.43 -2.39 -0.02 1.27 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.43 6.46 8.80 -96.74 -0.85 5.61 16 43 H 0.15 3.86 8.14 -2.39 -0.02 3.84 16 44 H 0.14 3.77 7.44 -2.39 -0.02 3.75 16 45 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 47 H 0.00 -0.02 8.01 -2.39 -0.02 -0.04 16 48 H 0.00 0.01 8.01 -2.38 -0.02 -0.01 16 49 H 0.26 15.89 7.22 -92.71 -0.67 15.22 16 Total: -1.00 -74.62 390.80 0.12 -74.49 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.15 Total: 18.71 kcal Atomic # 6 Polarization: -71.43 SS G_CDS: 3.19 Total: -68.24 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -0.47 Total: -79.60 kcal Atomic # 8 Polarization: -68.53 SS G_CDS: -4.49 Total: -73.02 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Atomic # 16 Polarization: 75.33 SS G_CDS: -0.30 Total: 75.02 kcal Total: -74.62 0.12 -74.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068913443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.723 kcal (2) G-P(sol) polarization free energy of solvation -74.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds