Wall clock time and date at job start Tue Mar 31 2020 12:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46915 * 2 1 4 4 C 1.53006 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46589 * 55.00845 * 4 3 2 6 6 C 1.52997 * 109.47445 * 295.00514 * 4 3 2 7 7 C 1.53002 * 109.46978 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47128 * 59.99726 * 7 6 4 9 9 C 1.52992 * 109.47106 * 300.00123 * 8 7 6 10 10 C 1.52997 * 109.47482 * 60.00162 * 9 8 7 11 11 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 12 12 N 1.46505 * 109.47212 * 179.97438 * 10 9 8 13 13 S 1.65591 * 119.99950 * 265.00044 * 12 10 9 14 14 O 1.42104 * 104.27605 * 181.07476 * 13 12 10 15 15 O 1.42100 * 104.27798 * 308.92657 * 13 12 10 16 16 C 1.81397 * 104.45189 * 64.99934 * 13 12 10 17 17 C 1.52997 * 109.47420 * 179.97438 * 16 13 12 18 18 C 1.53000 * 109.47187 * 180.02562 * 17 16 13 19 19 C 1.50711 * 109.46798 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00071 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99444 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99614 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00243 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47527 * 90.00158 * 23 21 19 25 25 H 1.48498 * 109.46957 * 210.00297 * 23 21 19 26 26 H 1.48499 * 109.47293 * 329.99763 * 23 21 19 27 27 H 1.09004 * 109.47346 * 299.99535 * 1 2 3 28 28 H 1.09001 * 109.47630 * 59.99665 * 1 2 3 29 29 H 1.09002 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46881 * 240.00724 * 2 1 3 31 31 H 1.08993 * 109.47322 * 120.00363 * 2 1 3 32 32 H 1.09004 * 109.46754 * 60.00646 * 3 2 1 33 33 H 1.08993 * 109.47422 * 300.00302 * 3 2 1 34 34 H 1.09002 * 109.47045 * 300.00058 * 6 4 3 35 35 H 1.08998 * 109.47171 * 59.99399 * 6 4 3 36 36 H 1.08996 * 109.46698 * 179.97438 * 7 6 4 37 37 H 1.09002 * 109.46838 * 299.99316 * 7 6 4 38 38 H 1.09002 * 109.47070 * 60.00059 * 8 7 6 39 39 H 1.08996 * 109.46550 * 179.97438 * 8 7 6 40 40 H 1.09002 * 109.47103 * 299.99915 * 9 8 7 41 41 H 1.08998 * 109.46862 * 180.02562 * 9 8 7 42 42 H 0.97002 * 119.99702 * 84.99964 * 12 10 9 43 43 H 1.08996 * 109.47471 * 300.00197 * 16 13 12 44 44 H 1.09009 * 109.46883 * 59.99612 * 16 13 12 45 45 H 1.09004 * 109.47015 * 299.99934 * 17 16 13 46 46 H 1.09000 * 109.47139 * 59.99827 * 17 16 13 47 47 H 1.08992 * 109.47072 * 299.99397 * 18 17 16 48 48 H 1.08998 * 109.47154 * 60.00124 * 18 17 16 49 49 H 0.96995 * 120.00226 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8411 6 6 4.0795 0.8330 1.3082 7 6 5.6095 0.8336 1.3090 8 6 6.1190 2.2708 1.1836 9 6 5.6095 2.8803 -0.1239 10 6 4.0795 2.8798 -0.1248 11 1 3.7155 3.4690 0.7169 12 7 3.5916 3.4639 -1.3766 13 16 3.1973 5.0709 -1.4420 14 8 2.7494 5.2678 -2.7761 15 8 2.3213 5.2619 -0.3395 16 6 4.7682 5.9342 -1.1638 17 6 4.5333 7.4456 -1.2020 18 6 5.8585 8.1737 -0.9680 19 6 5.6269 9.6624 -1.0051 20 1 4.6341 10.0503 -1.1786 21 6 6.6828 10.5291 -0.8175 22 7 6.4809 11.8282 -0.8503 23 14 8.3999 9.8581 -0.5166 24 1 9.0977 9.6831 -1.8157 25 1 9.1621 10.8103 0.3304 26 1 8.3050 8.5473 0.1748 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.7158 1.4225 2.1498 35 1 3.7161 -0.1907 1.3977 36 1 5.9724 0.3998 2.2407 37 1 5.9735 0.2443 0.4674 38 1 5.7550 2.8601 2.0253 39 1 7.2090 2.2712 1.1846 40 1 5.9735 2.2910 -0.9656 41 1 5.9728 3.9040 -0.2134 42 1 3.4996 2.9094 -2.1671 43 1 5.1699 5.6531 -0.1903 44 1 5.4780 5.6573 -1.9434 45 1 4.1319 7.7264 -2.1758 46 1 3.8234 7.7228 -0.4227 47 1 6.2602 7.8931 0.0055 48 1 6.5680 7.8964 -1.7477 49 1 7.2235 12.4380 -0.7179 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068913447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:39 Heat of formation + Delta-G solvation = -125.875882 kcal Electronic energy + Delta-G solvation = -25765.208939 eV Core-core repulsion = 22238.274783 eV Total energy + Delta-G solvation = -3526.934157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68179 -36.91208 -35.79363 -35.22669 -34.80461 -34.42395 -32.23087 -31.10504 -29.21520 -28.37429 -26.15653 -23.76077 -23.02691 -22.10646 -20.84358 -20.53465 -20.32586 -19.15321 -17.43207 -16.96600 -16.71440 -15.95718 -15.52827 -15.45252 -14.89558 -14.61301 -14.30444 -14.23613 -14.18008 -13.64251 -13.54485 -13.22640 -12.96904 -12.80568 -12.38572 -12.19424 -12.13627 -11.94981 -11.92714 -11.86583 -11.65039 -11.60184 -11.51098 -11.36497 -11.20670 -10.98243 -10.94634 -10.90123 -10.76800 -10.66089 -10.25793 -10.09799 -9.87252 -9.75540 -9.35293 -9.23895 -8.59303 -6.08869 -4.08103 0.41408 2.79598 3.25925 3.33483 3.35352 3.89302 4.20772 4.30631 4.39251 4.39734 4.51717 4.70656 4.78340 4.89499 4.91424 4.92943 5.00840 5.04868 5.11168 5.15757 5.20776 5.24943 5.33023 5.36646 5.46859 5.52391 5.59890 5.64831 5.68858 5.76709 5.78604 5.83782 5.86650 5.93352 5.97050 5.99721 6.06230 6.13896 6.17633 6.24845 6.27169 6.66474 6.89457 7.12071 7.26163 7.70611 8.47295 8.95710 9.52221 11.04490 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.003284 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.264544 B = 8523.250774 C = 9667.529542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.085 4.085 5 H 0.076 0.924 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.147 4.147 10 C 0.151 3.849 11 H 0.093 0.907 12 N -1.118 6.118 13 S 2.601 3.399 14 O -0.963 6.963 15 O -0.959 6.959 16 C -0.618 4.618 17 C -0.097 4.097 18 C -0.004 4.004 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.067 3.933 22 N -0.900 5.900 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.414 0.586 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.020 0.980 48 H 0.015 0.985 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 -27.882 3.281 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.105 4.105 5 H 0.094 0.906 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.158 4.158 9 C -0.186 4.186 10 C 0.044 3.956 11 H 0.111 0.889 12 N -0.875 5.875 13 S 2.696 3.304 14 O -0.953 6.953 15 O -0.948 6.948 16 C -0.749 4.749 17 C -0.137 4.137 18 C -0.043 4.043 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.248 0.752 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.709 -27.253 3.302 27.853 hybrid contribution 1.736 -0.434 -0.125 1.793 sum -2.973 -27.687 3.178 28.027 Atomic orbital electron populations 1.21788 0.96013 1.01332 1.02061 1.21576 0.95798 0.96993 1.01803 1.21692 0.94261 0.96641 1.03099 1.21374 0.95684 0.94736 0.98754 0.90594 1.21649 0.95407 1.01144 0.97148 1.21568 0.95611 0.96852 1.01810 1.21517 1.00671 0.96135 0.97488 1.22241 0.95291 1.02274 0.98802 1.20893 0.93217 0.95610 0.85881 0.88868 1.55774 1.84177 1.28592 1.18928 1.05265 0.77459 0.73372 0.74310 1.93585 1.80030 1.84499 1.37197 1.93578 1.61457 1.84645 1.55169 1.30727 1.21730 1.11072 1.11417 1.21310 1.02559 0.87030 1.02762 1.19525 0.91831 0.96310 0.96589 1.21139 0.96992 0.88728 1.49620 0.90733 1.25028 0.99056 0.94733 0.94611 1.69908 1.32038 1.01816 1.50128 0.86774 0.84674 0.79192 0.78608 1.20240 1.21278 1.19041 0.92667 0.92718 0.93004 0.92272 0.91905 0.91459 0.91448 0.91513 0.91335 0.91906 0.91971 0.91493 0.91516 0.90975 0.90940 0.75222 0.85418 0.85251 0.91038 0.90989 0.96195 0.96631 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.87 5.69 -26.73 -0.15 -1.02 16 3 C -0.12 -1.00 4.60 -26.73 -0.12 -1.12 16 4 C -0.09 -0.64 1.83 -90.62 -0.17 -0.80 16 5 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 6 C -0.12 -0.76 4.96 -26.73 -0.13 -0.89 16 7 C -0.12 -0.77 5.92 -26.73 -0.16 -0.92 16 8 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 9 C -0.15 -1.19 5.49 -26.74 -0.15 -1.34 16 10 C 0.15 1.36 2.13 -67.93 -0.14 1.21 16 11 H 0.09 0.93 7.48 -51.93 -0.39 0.54 16 12 N -1.12 -11.11 4.51 -4.89 -0.02 -11.13 16 13 S 2.60 36.69 5.44 -107.50 -0.58 36.10 16 14 O -0.96 -16.56 18.08 -57.54 -1.04 -17.60 16 15 O -0.96 -16.30 17.39 -57.54 -1.00 -17.30 16 16 C -0.62 -8.85 5.22 37.16 0.19 -8.65 16 17 C -0.10 -1.89 5.16 -26.73 -0.14 -2.03 16 18 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 19 C -0.53 -15.00 9.66 -34.43 -0.33 -15.33 16 20 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 23 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.63 7.45 -51.93 -0.39 0.25 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.40 6.56 -51.93 -0.34 0.06 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.63 5.78 -51.93 -0.30 0.33 16 42 H 0.41 3.35 8.80 -34.47 -0.30 3.05 16 43 H 0.13 1.58 6.77 -51.93 -0.35 1.23 16 44 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 48 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -34.63 386.22 -11.13 -45.76 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -9.11 Total: -0.37 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: -1.30 Total: -31.04 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.75 Total: -38.09 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -2.04 Total: -34.90 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 36.69 SS G_CDS: -0.58 Total: 36.10 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.63 -11.13 -45.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068913447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.117 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds