Wall clock time and date at job start Tue Mar 31 2020 12:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46915 * 2 1 4 4 C 1.53006 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46589 * 55.00845 * 4 3 2 6 6 C 1.52997 * 109.47445 * 295.00514 * 4 3 2 7 7 C 1.53002 * 109.46978 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47128 * 59.99726 * 7 6 4 9 9 C 1.52992 * 109.47106 * 300.00123 * 8 7 6 10 10 C 1.52997 * 109.47482 * 60.00162 * 9 8 7 11 11 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 12 12 N 1.46505 * 109.47212 * 179.97438 * 10 9 8 13 13 S 1.65591 * 119.99950 * 265.00044 * 12 10 9 14 14 O 1.42104 * 104.27605 * 181.07476 * 13 12 10 15 15 O 1.42100 * 104.27798 * 308.92657 * 13 12 10 16 16 C 1.81397 * 104.45189 * 64.99934 * 13 12 10 17 17 C 1.52997 * 109.47420 * 179.97438 * 16 13 12 18 18 C 1.53000 * 109.47187 * 180.02562 * 17 16 13 19 19 C 1.50711 * 109.46798 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00071 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99444 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99614 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00243 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47527 * 90.00158 * 23 21 19 25 25 H 1.48498 * 109.46957 * 210.00297 * 23 21 19 26 26 H 1.48499 * 109.47293 * 329.99763 * 23 21 19 27 27 H 1.09004 * 109.47346 * 299.99535 * 1 2 3 28 28 H 1.09001 * 109.47630 * 59.99665 * 1 2 3 29 29 H 1.09002 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46881 * 240.00724 * 2 1 3 31 31 H 1.08993 * 109.47322 * 120.00363 * 2 1 3 32 32 H 1.09004 * 109.46754 * 60.00646 * 3 2 1 33 33 H 1.08993 * 109.47422 * 300.00302 * 3 2 1 34 34 H 1.09002 * 109.47045 * 300.00058 * 6 4 3 35 35 H 1.08998 * 109.47171 * 59.99399 * 6 4 3 36 36 H 1.08996 * 109.46698 * 179.97438 * 7 6 4 37 37 H 1.09002 * 109.46838 * 299.99316 * 7 6 4 38 38 H 1.09002 * 109.47070 * 60.00059 * 8 7 6 39 39 H 1.08996 * 109.46550 * 179.97438 * 8 7 6 40 40 H 1.09002 * 109.47103 * 299.99915 * 9 8 7 41 41 H 1.08998 * 109.46862 * 180.02562 * 9 8 7 42 42 H 0.97002 * 119.99702 * 84.99964 * 12 10 9 43 43 H 1.08996 * 109.47471 * 300.00197 * 16 13 12 44 44 H 1.09009 * 109.46883 * 59.99612 * 16 13 12 45 45 H 1.09004 * 109.47015 * 299.99934 * 17 16 13 46 46 H 1.09000 * 109.47139 * 59.99827 * 17 16 13 47 47 H 1.08992 * 109.47072 * 299.99397 * 18 17 16 48 48 H 1.08998 * 109.47154 * 60.00124 * 18 17 16 49 49 H 0.96995 * 120.00226 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8411 6 6 4.0795 0.8330 1.3082 7 6 5.6095 0.8336 1.3090 8 6 6.1190 2.2708 1.1836 9 6 5.6095 2.8803 -0.1239 10 6 4.0795 2.8798 -0.1248 11 1 3.7155 3.4690 0.7169 12 7 3.5916 3.4639 -1.3766 13 16 3.1973 5.0709 -1.4420 14 8 2.7494 5.2678 -2.7761 15 8 2.3213 5.2619 -0.3395 16 6 4.7682 5.9342 -1.1638 17 6 4.5333 7.4456 -1.2020 18 6 5.8585 8.1737 -0.9680 19 6 5.6269 9.6624 -1.0051 20 1 4.6341 10.0503 -1.1786 21 6 6.6828 10.5291 -0.8175 22 7 6.4809 11.8282 -0.8503 23 14 8.3999 9.8581 -0.5166 24 1 9.0977 9.6831 -1.8157 25 1 9.1621 10.8103 0.3304 26 1 8.3050 8.5473 0.1748 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.7158 1.4225 2.1498 35 1 3.7161 -0.1907 1.3977 36 1 5.9724 0.3998 2.2407 37 1 5.9735 0.2443 0.4674 38 1 5.7550 2.8601 2.0253 39 1 7.2090 2.2712 1.1846 40 1 5.9735 2.2910 -0.9656 41 1 5.9728 3.9040 -0.2134 42 1 3.4996 2.9094 -2.1671 43 1 5.1699 5.6531 -0.1903 44 1 5.4780 5.6573 -1.9434 45 1 4.1319 7.7264 -2.1758 46 1 3.8234 7.7228 -0.4227 47 1 6.2602 7.8931 0.0055 48 1 6.5680 7.8964 -1.7477 49 1 7.2235 12.4380 -0.7179 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068913447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:38 Heat of formation + Delta-G solvation = -148.979572 kcal Electronic energy + Delta-G solvation = -25766.210790 eV Core-core repulsion = 22238.274783 eV Total energy + Delta-G solvation = -3527.936008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30910 -38.17349 -37.06158 -36.53774 -35.79448 -35.15194 -34.26428 -31.68308 -30.19326 -29.83342 -26.77078 -25.45635 -23.72802 -22.71714 -22.25031 -21.35404 -21.07400 -20.21487 -18.98406 -18.50318 -17.68323 -17.24367 -16.56607 -16.21757 -16.09693 -15.85384 -15.36619 -15.15839 -14.92934 -14.82009 -14.32532 -14.15288 -14.09299 -13.84078 -13.67033 -13.45409 -13.24735 -13.20288 -13.15582 -12.96541 -12.76862 -12.69963 -12.52397 -12.23529 -12.14637 -11.91972 -11.85408 -11.76306 -11.64828 -11.49555 -11.46782 -11.40920 -11.29774 -11.09045 -10.86055 -10.78164 -10.19771 -8.30455 -6.36533 -0.74380 1.36321 1.39046 1.50673 1.78160 2.35952 2.74821 3.04671 3.21922 3.57534 3.68170 3.79562 3.87046 3.93302 4.14704 4.21432 4.28961 4.31514 4.33183 4.39060 4.47781 4.56974 4.58919 4.64635 4.71114 4.76989 4.84288 4.85228 4.94533 4.95863 5.03540 5.09911 5.16162 5.24927 5.27469 5.32001 5.33292 5.36440 5.41777 5.43529 5.45072 5.50315 5.58156 5.61868 5.67611 6.16088 6.24620 6.71700 7.28084 8.86646 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.003284 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.264544 B = 8523.250774 C = 9667.529542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C -0.122 4.122 4 C -0.080 4.080 5 H 0.091 0.909 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.122 4.122 9 C -0.147 4.147 10 C 0.144 3.856 11 H 0.080 0.920 12 N -1.101 6.101 13 S 2.619 3.381 14 O -0.996 6.996 15 O -0.992 6.992 16 C -0.612 4.612 17 C -0.103 4.103 18 C -0.004 4.004 19 C -0.544 4.544 20 H 0.029 0.971 21 C 0.000 4.000 22 N -0.953 5.953 23 Si 0.956 3.044 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.237 1.237 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.426 0.574 43 H 0.152 0.848 44 H 0.157 0.843 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 -31.376 3.596 31.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C -0.160 4.160 4 C -0.100 4.100 5 H 0.109 0.891 6 C -0.151 4.151 7 C -0.155 4.155 8 C -0.160 4.160 9 C -0.187 4.187 10 C 0.038 3.962 11 H 0.099 0.901 12 N -0.861 5.861 13 S 2.715 3.285 14 O -0.986 6.986 15 O -0.982 6.982 16 C -0.743 4.743 17 C -0.142 4.142 18 C -0.042 4.042 19 C -0.583 4.583 20 H 0.047 0.953 21 C -0.196 4.196 22 N -0.593 5.593 23 Si 0.778 3.222 24 H -0.190 1.190 25 H -0.211 1.211 26 H -0.160 1.160 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.262 0.738 43 H 0.170 0.830 44 H 0.175 0.825 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.050 0.950 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.418 -30.768 3.606 31.073 hybrid contribution 0.903 0.679 -0.217 1.151 sum -1.515 -30.089 3.389 30.317 Atomic orbital electron populations 1.21818 0.96455 1.01834 1.01398 1.21553 0.95420 0.96055 1.02707 1.21702 0.95184 0.97388 1.01696 1.21360 0.94789 0.93858 0.99968 0.89108 1.21644 0.95812 1.01541 0.96152 1.21550 0.95078 0.96297 1.02563 1.21547 1.01040 0.96664 0.96776 1.22259 0.94054 1.02505 0.99835 1.21097 0.94240 0.96257 0.84641 0.90148 1.55343 1.83972 1.26750 1.20036 1.04430 0.77072 0.74164 0.72836 1.93537 1.80855 1.85514 1.38735 1.93538 1.62873 1.85612 1.56131 1.30648 1.22592 1.07032 1.14037 1.21175 1.00549 0.90532 1.01982 1.19494 0.94094 0.92987 0.97649 1.21561 0.95260 0.92121 1.49310 0.95303 1.26129 1.04490 0.94841 0.94189 1.70084 1.33791 1.03685 1.51753 0.85582 0.77862 0.79563 0.79198 1.18956 1.21145 1.16003 0.93271 0.93504 0.91912 0.91376 0.90865 0.92981 0.92823 0.92288 0.90138 0.91229 0.91125 0.92149 0.90904 0.89609 0.91256 0.73771 0.82969 0.82455 0.92017 0.92013 0.94893 0.95040 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.46 5.69 30.59 0.17 -1.29 16 3 C -0.12 -1.91 4.60 30.60 0.14 -1.77 16 4 C -0.08 -1.00 1.83 -10.79 -0.02 -1.02 16 5 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 6 C -0.11 -1.20 4.96 30.59 0.15 -1.05 16 7 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 8 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 9 C -0.15 -1.93 5.49 30.59 0.17 -1.76 16 10 C 0.14 2.29 2.13 44.99 0.10 2.39 16 11 H 0.08 1.51 7.48 -2.39 -0.02 1.50 16 12 N -1.10 -19.92 4.51 -169.38 -0.76 -20.69 16 13 S 2.62 72.01 5.44 -56.49 -0.31 71.70 16 14 O -1.00 -34.01 18.08 -127.65 -2.31 -36.32 16 15 O -0.99 -33.95 17.39 -127.65 -2.22 -36.17 16 16 C -0.61 -16.22 5.22 71.98 0.38 -15.85 16 17 C -0.10 -3.98 5.16 30.59 0.16 -3.82 16 18 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 19 C -0.54 -31.72 9.66 25.60 0.25 -31.47 16 20 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 21 C 0.00 0.01 5.47 84.66 0.46 0.47 16 22 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 23 Si 0.96 43.14 27.47 68.60 1.88 45.02 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.24 -9.54 6.54 99.48 0.65 -8.88 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.75 6.56 -2.39 -0.02 0.73 16 32 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 0.97 7.45 -2.39 -0.02 0.96 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.68 6.56 -2.39 -0.02 0.67 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.95 5.78 -2.39 -0.01 0.94 16 42 H 0.43 5.98 8.80 -96.75 -0.85 5.13 16 43 H 0.15 3.30 6.77 -2.39 -0.02 3.28 16 44 H 0.16 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 48 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 49 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -77.04 386.22 -0.27 -77.30 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.00 Total: 18.02 kcal Atomic # 6 Polarization: -61.95 SS G_CDS: 3.15 Total: -58.80 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -0.46 Total: -80.77 kcal Atomic # 8 Polarization: -67.96 SS G_CDS: -4.53 Total: -72.49 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.02 kcal Atomic # 16 Polarization: 72.01 SS G_CDS: -0.31 Total: 71.70 kcal Total: -77.04 -0.27 -77.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068913447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.677 kcal (2) G-P(sol) polarization free energy of solvation -77.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds