Wall clock time and date at job start Tue Mar 31 2020 11:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47414 * 2 1 4 4 C 1.53004 * 109.46964 * 120.00352 * 2 1 3 5 5 C 1.53003 * 109.46890 * 174.47944 * 4 2 1 6 6 H 1.09012 * 109.67686 * 61.36151 * 5 4 2 7 7 C 1.53290 * 109.71505 * 300.82639 * 5 4 2 8 8 O 1.42964 * 109.22475 * 187.95250 * 7 5 4 9 9 C 1.42962 * 114.16133 * 62.58251 * 8 7 5 10 10 C 1.53712 * 109.14833 * 297.28560 * 9 8 7 11 11 N 1.47154 * 108.16265 * 52.54166 * 10 9 8 12 12 C 1.34779 * 120.98616 * 129.43002 * 11 10 9 13 13 O 1.21547 * 119.99930 * 175.72559 * 12 11 10 14 14 C 1.47885 * 119.99452 * 355.99822 * 12 11 10 15 15 C 1.39920 * 120.02747 * 33.77289 * 14 12 11 16 16 C 1.38324 * 120.35695 * 179.70821 * 15 14 12 17 17 C 1.37751 * 120.41274 * 0.56943 * 16 15 14 18 18 C 1.40745 * 120.04138 * 359.70692 * 17 16 15 19 19 C 1.41437 * 120.18170 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00011 * 325.92946 * 19 18 17 21 21 C 1.39940 * 120.00097 * 145.92583 * 19 18 17 22 22 N 1.30827 * 119.99709 * 357.83639 * 21 19 18 23 23 Si 1.86792 * 120.00035 * 177.83363 * 21 19 18 24 24 H 1.48508 * 109.47118 * 60.00537 * 23 21 19 25 25 H 1.48506 * 109.47120 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47547 * 300.00563 * 23 21 19 27 27 C 1.38997 * 120.02161 * 214.04107 * 14 12 11 28 28 H 1.09002 * 109.46896 * 299.99871 * 1 2 3 29 29 H 1.08994 * 109.47320 * 59.99956 * 1 2 3 30 30 H 1.08996 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46909 * 239.99582 * 2 1 3 32 32 H 1.09003 * 109.46874 * 185.43136 * 3 2 1 33 33 H 1.08999 * 109.47008 * 305.43224 * 3 2 1 34 34 H 1.09001 * 109.47399 * 65.43238 * 3 2 1 35 35 H 1.09000 * 109.47307 * 54.48194 * 4 2 1 36 36 H 1.08996 * 109.47128 * 294.47878 * 4 2 1 37 37 H 1.08999 * 109.51535 * 307.88100 * 7 5 4 38 38 H 1.09000 * 109.51746 * 68.03039 * 7 5 4 39 39 H 1.08996 * 109.51893 * 57.34534 * 9 8 7 40 40 H 1.09004 * 109.51384 * 177.44825 * 9 8 7 41 41 H 1.08999 * 109.84235 * 292.86163 * 10 9 8 42 42 H 1.09000 * 109.75142 * 172.16896 * 10 9 8 43 43 H 1.08001 * 119.81923 * 359.97438 * 15 14 12 44 44 H 1.08005 * 119.79621 * 180.25327 * 16 15 14 45 45 H 1.08001 * 119.98154 * 179.69872 * 17 16 15 46 46 H 0.97008 * 120.00080 * 179.97438 * 22 21 19 47 47 H 1.07994 * 120.20060 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5637 -0.8426 1.1818 6 1 4.0102 0.1515 1.1552 7 6 3.9652 -1.6226 -0.0753 8 8 5.3689 -1.8907 -0.0347 9 6 5.7762 -2.7125 1.0619 10 6 5.4689 -1.9834 2.3797 11 7 4.0552 -1.5754 2.3594 12 6 3.2361 -1.8597 3.3913 13 8 2.0927 -1.4474 3.3910 14 6 3.7304 -2.6682 4.5266 15 6 5.0649 -2.5617 4.9334 16 6 5.5330 -3.3103 5.9983 17 6 4.6943 -4.1775 6.6631 18 6 3.3502 -4.3024 6.2646 19 6 2.4867 -5.1923 6.9448 20 1 2.8716 -6.1193 7.3435 21 6 1.1335 -4.8718 7.1012 22 7 0.6761 -3.7299 6.6556 23 14 -0.0196 -6.0742 7.9461 24 1 0.4528 -6.3223 9.3320 25 1 -1.3894 -5.5018 7.9856 26 1 -0.0388 -7.3540 7.1931 27 6 2.8710 -3.5385 5.1869 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1257 1.4439 -0.0973 33 1 1.5995 1.9836 -0.8373 34 1 1.7584 1.9275 0.9346 35 1 1.5982 -1.7165 1.3000 36 1 1.7596 -0.1537 2.1365 37 1 3.4158 -2.5633 -0.1112 38 1 3.7331 -1.0307 -0.9607 39 1 5.2334 -3.6571 1.0303 40 1 6.8469 -2.9054 0.9943 41 1 6.1039 -1.1023 2.4719 42 1 5.6456 -2.6533 3.2212 43 1 5.7320 -1.8883 4.4159 44 1 6.5638 -3.2179 6.3072 45 1 5.0684 -4.7622 7.4905 46 1 -0.2620 -3.5078 6.7637 47 1 1.8412 -3.6268 4.8738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071045322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:07 Heat of formation + Delta-G solvation = -57.043757 kcal Electronic energy + Delta-G solvation = -27667.741829 eV Core-core repulsion = 24008.348506 eV Total energy + Delta-G solvation = -3659.393323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89027 -39.65234 -38.80454 -37.47741 -36.01963 -35.30938 -33.01436 -31.58985 -31.36359 -29.24920 -28.03525 -27.41982 -27.13818 -24.80380 -24.24852 -22.72084 -22.37007 -20.88798 -20.42964 -19.19024 -17.69867 -17.56378 -17.33802 -17.08088 -16.67939 -16.53110 -16.02418 -15.75376 -15.54312 -15.34515 -15.04730 -14.61115 -14.48488 -14.27796 -14.18170 -14.01134 -13.57239 -13.40278 -13.19853 -13.01077 -12.83368 -12.73073 -12.62312 -12.48147 -12.38948 -12.29003 -11.87136 -11.85096 -11.61555 -11.56385 -11.46035 -11.38424 -11.14881 -11.10166 -9.98700 -9.61998 -9.34381 -9.26097 -8.55792 -6.44050 0.43934 0.98557 1.35607 1.45718 1.48326 1.84250 2.02679 2.20136 2.75991 2.83060 3.56643 3.59821 3.66727 3.89759 3.96230 4.01534 4.07874 4.11921 4.24298 4.31612 4.42480 4.44635 4.54768 4.59523 4.63936 4.77197 4.79523 4.81970 4.85944 4.90260 4.96375 5.01324 5.08101 5.11588 5.13345 5.17185 5.26736 5.32601 5.45599 5.48098 5.51461 5.68097 5.81420 5.91079 6.04217 6.06946 6.27190 6.36068 6.60293 6.89743 6.93511 7.24906 8.38120 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013502 B = 0.004237 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.205909 B = 6606.693789 C = 8093.949378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.097 4.097 5 C 0.113 3.887 6 H 0.089 0.911 7 C 0.057 3.943 8 O -0.386 6.386 9 C 0.047 3.953 10 C 0.035 3.965 11 N -0.610 5.610 12 C 0.560 3.440 13 O -0.567 6.567 14 C -0.138 4.138 15 C -0.204 4.204 16 C -0.098 4.098 17 C -0.206 4.206 18 C 0.069 3.931 19 C -0.502 4.502 20 H 0.083 0.917 21 C 0.025 3.975 22 N -0.843 5.843 23 Si 0.986 3.014 24 H -0.255 1.255 25 H -0.276 1.276 26 H -0.258 1.258 27 C -0.120 4.120 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.131 0.869 39 H 0.046 0.954 40 H 0.138 0.862 41 H 0.095 0.905 42 H 0.133 0.867 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.110 0.890 46 H 0.282 0.718 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.779 5.245 -13.140 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.135 4.135 5 C 0.010 3.990 6 H 0.107 0.893 7 C -0.021 4.021 8 O -0.305 6.305 9 C -0.030 4.030 10 C -0.086 4.086 11 N -0.343 5.343 12 C 0.351 3.649 13 O -0.448 6.448 14 C -0.141 4.141 15 C -0.223 4.223 16 C -0.115 4.115 17 C -0.226 4.226 18 C 0.067 3.933 19 C -0.533 4.533 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.471 5.471 23 Si 0.806 3.194 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.182 1.182 27 C -0.141 4.141 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.149 0.851 39 H 0.064 0.936 40 H 0.155 0.845 41 H 0.113 0.887 42 H 0.150 0.850 43 H 0.168 0.832 44 H 0.160 0.840 45 H 0.128 0.872 46 H 0.092 0.908 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.104 5.676 -13.305 16.116 hybrid contribution -1.319 -0.620 1.042 1.792 sum 5.784 5.056 -12.264 14.471 Atomic orbital electron populations 1.21785 0.95242 1.01252 1.01816 1.21315 0.96084 0.97106 0.97397 1.21856 1.01427 0.95030 1.01806 1.21950 0.92515 1.00396 0.98632 1.22136 0.95853 0.95889 0.85101 0.89291 1.23148 0.81934 0.99215 0.97761 1.87913 1.23406 1.70904 1.48235 1.23247 1.02791 0.92296 0.84653 1.23739 0.80394 1.02508 1.01984 1.48142 1.11415 1.56942 1.17824 1.18855 0.84545 0.78943 0.82509 1.90722 1.20427 1.53880 1.79746 1.19831 0.95961 1.00378 0.97945 1.21306 0.93435 1.05708 1.01825 1.20988 0.99620 0.95916 0.95023 1.21535 0.94800 1.03790 1.02436 1.17943 0.92964 0.92319 0.90117 1.19812 0.93944 1.05928 1.33602 0.89936 1.26820 1.00225 0.96853 0.94869 1.69892 1.16703 1.22298 1.38159 0.85193 0.76417 0.78323 0.79422 1.17934 1.20033 1.18211 1.21405 0.98145 0.98943 0.95569 0.94099 0.90641 0.93810 0.89634 0.91834 0.90974 0.94019 0.94642 0.91445 0.93758 0.85131 0.93599 0.84463 0.88718 0.85004 0.83166 0.83952 0.87162 0.90770 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.19 71.98 0.66 -2.68 16 2 C -0.10 -2.28 2.70 -10.79 -0.03 -2.31 16 3 C -0.14 -2.79 8.83 71.98 0.64 -2.16 16 4 C -0.10 -3.08 2.67 30.60 0.08 -3.00 16 5 C 0.11 3.18 2.94 44.96 0.13 3.32 16 6 H 0.09 2.30 6.79 -2.38 -0.02 2.28 16 7 C 0.06 1.33 5.66 72.08 0.41 1.74 16 8 O -0.39 -9.15 10.74 -148.98 -1.60 -10.75 16 9 C 0.05 1.03 7.00 72.22 0.51 1.54 16 10 C 0.03 0.89 5.11 86.49 0.44 1.33 16 11 N -0.61 -20.34 3.01 -796.04 -2.40 -22.74 16 12 C 0.56 24.68 7.29 86.80 0.63 25.32 16 13 O -0.57 -28.79 12.50 -3.86 -0.05 -28.84 16 14 C -0.14 -6.44 5.52 -20.13 -0.11 -6.55 16 15 C -0.20 -7.77 7.45 22.70 0.17 -7.60 16 16 C -0.10 -3.69 10.01 22.17 0.22 -3.47 16 17 C -0.21 -9.36 9.78 22.77 0.22 -9.14 16 18 C 0.07 3.68 5.52 -21.32 -0.12 3.57 16 19 C -0.50 -27.31 9.05 23.47 0.21 -27.10 16 20 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 21 C 0.02 1.30 5.36 85.25 0.46 1.75 16 22 N -0.84 -48.10 10.80 21.83 0.24 -47.87 16 23 Si 0.99 40.14 29.56 68.60 2.03 42.17 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 27 C -0.12 -6.60 8.19 23.01 0.19 -6.41 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.61 6.33 -2.39 -0.02 1.59 16 32 H 0.06 1.11 6.88 -2.39 -0.02 1.09 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.03 1.34 7.42 -2.39 -0.02 1.32 16 36 H 0.07 2.65 6.12 -2.39 -0.01 2.63 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.13 2.31 6.78 -2.39 -0.02 2.29 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.14 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 42 H 0.13 3.60 3.70 -2.47 -0.01 3.59 16 43 H 0.15 4.49 5.30 -2.91 -0.02 4.48 16 44 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 45 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 46 H 0.28 15.02 8.30 -92.70 -0.77 14.25 16 47 H 0.09 5.84 6.25 -2.91 -0.02 5.82 16 Total: -1.00 -68.65 361.29 3.90 -64.75 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.97 Total: 35.13 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 4.71 Total: -31.85 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -2.16 Total: -70.61 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.65 Total: -39.59 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -68.65 3.90 -64.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071045322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.706 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds