Wall clock time and date at job start Tue Mar 31 2020 12:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47031 * 2 1 4 4 C 1.52995 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47812 * 55.00171 * 4 3 2 6 6 C 1.53005 * 109.46877 * 175.00080 * 4 3 2 7 7 N 1.46502 * 109.47192 * 294.99808 * 4 3 2 8 8 C 1.46500 * 120.00023 * 300.00060 * 7 4 3 9 9 C 1.34769 * 120.00008 * 120.00436 * 7 4 3 10 10 O 1.21723 * 120.00323 * 359.97438 * 9 7 4 11 11 C 1.46260 * 120.00205 * 180.02562 * 9 7 4 12 12 C 1.35019 * 119.99953 * 179.97438 * 11 9 7 13 13 C 1.46960 * 119.99966 * 179.97438 * 12 11 9 14 14 C 1.40026 * 120.10278 * 180.02562 * 13 12 11 15 15 C 1.37594 * 119.89671 * 179.97438 * 14 13 12 16 16 C 1.39178 * 120.10069 * 0.25354 * 15 14 13 17 17 O 1.35579 * 119.89545 * 179.74677 * 16 15 14 18 18 C 1.34785 * 117.00142 * 354.44034 * 17 16 15 19 19 H 1.08005 * 119.99845 * 5.06100 * 18 17 16 20 20 C 1.38717 * 119.99804 * 185.06117 * 18 17 16 21 21 N 1.31502 * 120.00291 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99602 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47245 * 89.99661 * 22 20 18 24 24 H 1.48505 * 109.47092 * 209.99534 * 22 20 18 25 25 H 1.48502 * 109.47083 * 329.99478 * 22 20 18 26 26 C 1.39173 * 120.20483 * 359.49052 * 16 15 14 27 27 C 1.37597 * 120.09959 * 0.50940 * 26 16 15 28 28 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46813 * 299.99536 * 1 2 3 30 30 H 1.08996 * 109.47629 * 59.99568 * 1 2 3 31 31 H 1.09003 * 109.46813 * 240.00464 * 2 1 3 32 32 H 1.08998 * 109.46824 * 120.00009 * 2 1 3 33 33 H 1.08995 * 109.47075 * 60.00252 * 3 2 1 34 34 H 1.09004 * 109.47095 * 300.00389 * 3 2 1 35 35 H 1.08996 * 109.47202 * 299.99721 * 6 4 3 36 36 H 1.08997 * 109.47278 * 59.99768 * 6 4 3 37 37 H 1.09003 * 109.46993 * 180.02562 * 6 4 3 38 38 H 1.08996 * 109.47462 * 270.00555 * 8 7 4 39 39 H 1.09002 * 109.46941 * 30.00301 * 8 7 4 40 40 H 1.09002 * 109.47020 * 149.99898 * 8 7 4 41 41 H 1.07994 * 119.99446 * 359.97438 * 11 9 7 42 42 H 1.08003 * 120.00342 * 359.97438 * 12 11 9 43 43 H 1.07997 * 120.04748 * 359.95180 * 14 13 12 44 44 H 1.08000 * 119.95146 * 179.97438 * 15 14 13 45 45 H 0.97001 * 119.99987 * 179.97438 * 21 20 18 46 46 H 1.08004 * 119.95191 * 180.26076 * 26 16 15 47 47 H 1.08000 * 120.05078 * 179.77151 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0799 2.8795 -0.1264 7 7 4.0588 0.8586 1.2509 8 6 3.7055 1.4730 2.5330 9 6 4.8337 -0.2438 1.2228 10 8 5.1270 -0.7546 0.1575 11 6 5.3213 -0.8271 2.4722 12 6 6.0971 -1.9317 2.4440 13 6 6.5875 -2.5175 3.6994 14 6 7.3927 -3.6628 3.6726 15 6 7.8500 -4.2073 4.8506 16 6 7.5090 -3.6247 6.0677 17 8 7.9576 -4.1677 7.2261 18 6 8.6303 -5.3322 7.1359 19 1 8.8615 -5.7486 6.1665 20 6 9.0255 -5.9959 8.2880 21 7 8.7444 -5.4888 9.4683 22 14 9.9584 -7.6095 8.1629 23 1 11.4172 -7.3357 8.1181 24 1 9.6492 -8.4530 9.3454 25 1 9.5503 -8.3226 6.9259 26 6 6.7134 -2.4832 6.0990 27 6 6.2515 -1.9317 4.9260 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.7163 3.3140 -1.0575 36 1 3.7169 3.4689 0.7157 37 1 5.1700 2.8795 -0.1273 38 1 4.4568 2.2165 2.7990 39 1 2.7314 1.9549 2.4488 40 1 3.6652 0.7047 3.3052 41 1 5.0607 -0.3741 3.4173 42 1 6.3573 -2.3849 1.4988 43 1 7.6541 -4.1181 2.7289 44 1 8.4707 -5.0909 4.8310 45 1 9.0205 -5.9531 10.2740 46 1 6.4547 -2.0320 7.0455 47 1 5.6311 -1.0480 4.9514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075631738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:44 Heat of formation + Delta-G solvation = -35.760029 kcal Electronic energy + Delta-G solvation = -25371.926414 eV Core-core repulsion = 21713.456022 eV Total energy + Delta-G solvation = -3658.470391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.06296 -39.16362 -37.18621 -36.67995 -34.23943 -33.22033 -32.34519 -31.45514 -30.42846 -28.16050 -27.05746 -26.88202 -25.69690 -23.78135 -22.25564 -21.90277 -21.10545 -19.79975 -18.69038 -18.03535 -17.48224 -17.00405 -16.23914 -15.65524 -14.93252 -14.89281 -14.71746 -14.41424 -14.22652 -13.84849 -13.78056 -13.48710 -13.43834 -13.15761 -13.05526 -12.93389 -12.70389 -12.49525 -12.36031 -12.22182 -11.86980 -11.76749 -11.65355 -11.57518 -11.13161 -11.11023 -10.99179 -10.95955 -10.82053 -10.66909 -10.53816 -9.65521 -9.59108 -9.49349 -8.88198 -8.66692 -8.38329 -7.11000 -6.65256 -4.20130 1.08255 2.13394 2.56421 3.00962 3.03780 3.04734 3.09547 3.59293 3.82176 4.38606 4.51121 4.75668 4.76223 4.86936 4.92019 4.95292 5.04163 5.09948 5.10369 5.24212 5.25061 5.32006 5.35438 5.45940 5.50962 5.54215 5.57355 5.61940 5.65688 5.69768 5.78726 5.87739 5.94690 6.00838 6.02570 6.12425 6.15093 6.38330 6.47152 6.57979 6.66371 6.79523 6.91979 7.13146 7.23748 7.27884 7.45561 7.63923 7.80121 8.34606 8.79593 9.46568 10.51390 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027452 B = 0.002039 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.712433 B =13729.013547 C =13743.440227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.128 4.128 4 C 0.134 3.866 5 H 0.100 0.900 6 C -0.160 4.160 7 N -0.612 5.612 8 C 0.078 3.922 9 C 0.557 3.443 10 O -0.559 6.559 11 C -0.284 4.284 12 C 0.037 3.963 13 C -0.198 4.198 14 C -0.035 4.035 15 C -0.242 4.242 16 C 0.167 3.833 17 O -0.163 6.163 18 C -0.393 4.393 19 H 0.097 0.903 20 C 0.041 3.959 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 C -0.199 4.199 27 C -0.043 4.043 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.274 0.726 46 H 0.121 0.879 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.426 12.911 -14.237 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.166 4.166 4 C 0.030 3.970 5 H 0.118 0.882 6 C -0.218 4.218 7 N -0.345 5.345 8 C -0.066 4.066 9 C 0.351 3.649 10 O -0.440 6.440 11 C -0.305 4.305 12 C 0.017 3.983 13 C -0.199 4.199 14 C -0.053 4.053 15 C -0.261 4.261 16 C 0.110 3.890 17 O -0.064 6.064 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.485 5.485 22 Si 0.769 3.231 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.189 1.189 26 C -0.219 4.219 27 C -0.061 4.061 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.149 0.851 45 H 0.084 0.916 46 H 0.139 0.861 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.250 12.654 -14.256 22.134 hybrid contribution 0.434 -0.680 0.121 0.816 sum -10.817 11.974 -14.134 21.451 Atomic orbital electron populations 1.21764 0.95984 1.01600 1.01426 1.21476 0.95416 0.96544 1.02609 1.21982 0.94773 0.97540 1.02312 1.21068 0.93416 0.94486 0.88013 0.88191 1.22123 1.01770 0.95907 1.01999 1.47686 1.51564 1.28527 1.06730 1.21773 1.00568 0.98820 0.85394 1.18419 0.77324 0.79302 0.89828 1.90751 1.58980 1.61818 1.32447 1.22555 1.09045 1.02276 0.96595 1.22299 0.88126 0.91087 0.96747 1.18466 1.08568 1.00769 0.92088 1.20987 0.93734 0.93366 0.97259 1.21101 1.08406 1.04741 0.91877 1.19612 0.90692 0.92118 0.86546 1.83905 1.60779 1.35413 1.26257 1.21473 1.33748 0.96678 0.94948 0.88546 1.25393 0.97387 0.99627 0.94078 1.70010 1.42206 1.38624 0.97647 0.85648 0.79311 0.79540 0.78640 1.19636 1.20049 1.18949 1.20144 1.04653 0.98649 0.98414 1.20862 0.96654 0.97476 0.91125 0.92811 0.92930 0.92961 0.91984 0.91867 0.91648 0.91062 0.91667 0.92407 0.92251 0.92767 0.91311 0.90534 0.85695 0.86024 0.86830 0.85126 0.91604 0.86139 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.13 5.82 -26.73 -0.16 -1.29 16 3 C -0.13 -1.00 4.64 -26.73 -0.12 -1.12 16 4 C 0.13 1.29 2.64 -67.93 -0.18 1.11 16 5 H 0.10 1.19 6.90 -51.93 -0.36 0.84 16 6 C -0.16 -1.24 9.19 37.16 0.34 -0.90 16 7 N -0.61 -6.71 2.21 -175.63 -0.39 -7.09 16 8 C 0.08 0.63 9.21 59.85 0.55 1.18 16 9 C 0.56 8.03 7.60 -13.04 -0.10 7.93 16 10 O -0.56 -9.85 15.56 5.17 0.08 -9.76 16 11 C -0.28 -3.97 8.61 -37.50 -0.32 -4.29 16 12 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 13 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 14 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 15 C -0.24 -5.02 9.14 -39.47 -0.36 -5.38 16 16 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 17 O -0.16 -4.41 9.74 0.70 0.01 -4.40 16 18 C -0.39 -10.44 9.48 30.91 0.29 -10.14 16 19 H 0.10 2.35 5.18 -52.48 -0.27 2.08 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.85 -23.83 13.67 55.48 0.76 -23.07 16 22 Si 0.94 19.53 29.55 -169.99 -5.02 14.51 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 26 C -0.20 -3.97 9.97 -39.47 -0.39 -4.37 16 27 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 33 H 0.06 0.46 6.48 -51.93 -0.34 0.12 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.44 6.34 -51.93 -0.33 0.11 16 40 H 0.08 0.61 6.09 -51.93 -0.32 0.29 16 41 H 0.13 1.51 4.21 -52.49 -0.22 1.29 16 42 H 0.12 1.88 7.52 -52.48 -0.39 1.49 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 44 H 0.13 2.68 5.62 -52.49 -0.29 2.39 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 47 H 0.12 1.62 6.16 -52.49 -0.32 1.29 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -30.39 384.41 -7.94 -38.33 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.01 Total: 5.09 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -2.16 Total: -19.39 kcal Atomic # 7 Polarization: -30.53 SS G_CDS: 0.37 Total: -30.16 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.09 Total: -14.17 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.39 -7.94 -38.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075631738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.566 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds