Wall clock time and date at job start Tue Mar 31 2020 12:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47031 * 2 1 4 4 C 1.52995 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47812 * 55.00171 * 4 3 2 6 6 C 1.53005 * 109.46877 * 175.00080 * 4 3 2 7 7 N 1.46502 * 109.47192 * 294.99808 * 4 3 2 8 8 C 1.46500 * 120.00023 * 300.00060 * 7 4 3 9 9 C 1.34769 * 120.00008 * 120.00436 * 7 4 3 10 10 O 1.21723 * 120.00323 * 359.97438 * 9 7 4 11 11 C 1.46260 * 120.00205 * 180.02562 * 9 7 4 12 12 C 1.35019 * 119.99953 * 179.97438 * 11 9 7 13 13 C 1.46960 * 119.99966 * 179.97438 * 12 11 9 14 14 C 1.40026 * 120.10278 * 180.02562 * 13 12 11 15 15 C 1.37594 * 119.89671 * 179.97438 * 14 13 12 16 16 C 1.39178 * 120.10069 * 0.25354 * 15 14 13 17 17 O 1.35579 * 119.89545 * 179.74677 * 16 15 14 18 18 C 1.34785 * 117.00142 * 354.44034 * 17 16 15 19 19 H 1.08005 * 119.99845 * 5.06100 * 18 17 16 20 20 C 1.38717 * 119.99804 * 185.06117 * 18 17 16 21 21 N 1.31502 * 120.00291 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99602 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47245 * 89.99661 * 22 20 18 24 24 H 1.48505 * 109.47092 * 209.99534 * 22 20 18 25 25 H 1.48502 * 109.47083 * 329.99478 * 22 20 18 26 26 C 1.39173 * 120.20483 * 359.49052 * 16 15 14 27 27 C 1.37597 * 120.09959 * 0.50940 * 26 16 15 28 28 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46813 * 299.99536 * 1 2 3 30 30 H 1.08996 * 109.47629 * 59.99568 * 1 2 3 31 31 H 1.09003 * 109.46813 * 240.00464 * 2 1 3 32 32 H 1.08998 * 109.46824 * 120.00009 * 2 1 3 33 33 H 1.08995 * 109.47075 * 60.00252 * 3 2 1 34 34 H 1.09004 * 109.47095 * 300.00389 * 3 2 1 35 35 H 1.08996 * 109.47202 * 299.99721 * 6 4 3 36 36 H 1.08997 * 109.47278 * 59.99768 * 6 4 3 37 37 H 1.09003 * 109.46993 * 180.02562 * 6 4 3 38 38 H 1.08996 * 109.47462 * 270.00555 * 8 7 4 39 39 H 1.09002 * 109.46941 * 30.00301 * 8 7 4 40 40 H 1.09002 * 109.47020 * 149.99898 * 8 7 4 41 41 H 1.07994 * 119.99446 * 359.97438 * 11 9 7 42 42 H 1.08003 * 120.00342 * 359.97438 * 12 11 9 43 43 H 1.07997 * 120.04748 * 359.95180 * 14 13 12 44 44 H 1.08000 * 119.95146 * 179.97438 * 15 14 13 45 45 H 0.97001 * 119.99987 * 179.97438 * 21 20 18 46 46 H 1.08004 * 119.95191 * 180.26076 * 26 16 15 47 47 H 1.08000 * 120.05078 * 179.77151 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0799 2.8795 -0.1264 7 7 4.0588 0.8586 1.2509 8 6 3.7055 1.4730 2.5330 9 6 4.8337 -0.2438 1.2228 10 8 5.1270 -0.7546 0.1575 11 6 5.3213 -0.8271 2.4722 12 6 6.0971 -1.9317 2.4440 13 6 6.5875 -2.5175 3.6994 14 6 7.3927 -3.6628 3.6726 15 6 7.8500 -4.2073 4.8506 16 6 7.5090 -3.6247 6.0677 17 8 7.9576 -4.1677 7.2261 18 6 8.6303 -5.3322 7.1359 19 1 8.8615 -5.7486 6.1665 20 6 9.0255 -5.9959 8.2880 21 7 8.7444 -5.4888 9.4683 22 14 9.9584 -7.6095 8.1629 23 1 11.4172 -7.3357 8.1181 24 1 9.6492 -8.4530 9.3454 25 1 9.5503 -8.3226 6.9259 26 6 6.7134 -2.4832 6.0990 27 6 6.2515 -1.9317 4.9260 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.7163 3.3140 -1.0575 36 1 3.7169 3.4689 0.7157 37 1 5.1700 2.8795 -0.1273 38 1 4.4568 2.2165 2.7990 39 1 2.7314 1.9549 2.4488 40 1 3.6652 0.7047 3.3052 41 1 5.0607 -0.3741 3.4173 42 1 6.3573 -2.3849 1.4988 43 1 7.6541 -4.1181 2.7289 44 1 8.4707 -5.0909 4.8310 45 1 9.0205 -5.9531 10.2740 46 1 6.4547 -2.0320 7.0455 47 1 5.6311 -1.0480 4.9514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075631738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:43 Heat of formation + Delta-G solvation = -51.394824 kcal Electronic energy + Delta-G solvation = -25372.604389 eV Core-core repulsion = 21713.456022 eV Total energy + Delta-G solvation = -3659.148367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13450 -40.76895 -38.59280 -37.83471 -35.10868 -34.68733 -33.99468 -32.29320 -31.96391 -29.60053 -27.79319 -27.57414 -27.47293 -25.04938 -23.74983 -22.87168 -22.18422 -20.92011 -20.05869 -19.40233 -18.83148 -18.50437 -17.23612 -16.57750 -16.44583 -16.29106 -16.01717 -15.63968 -15.58769 -15.28453 -14.90593 -14.73883 -14.51275 -14.24384 -14.09674 -13.90752 -13.62455 -13.59542 -13.46018 -13.31453 -13.08599 -12.85088 -12.75383 -12.71039 -12.55991 -12.32660 -12.18892 -12.12941 -11.74367 -11.64127 -11.51160 -11.21916 -11.11516 -10.81559 -10.57366 -9.89874 -9.58434 -8.67864 -8.52439 -6.18438 -0.25327 0.57955 1.13199 1.35657 1.45634 1.52717 2.11064 2.15080 2.37237 2.86099 3.17340 3.41802 3.59082 3.81745 3.92931 4.07022 4.07619 4.07915 4.23580 4.26580 4.35063 4.42075 4.44163 4.48035 4.60137 4.65420 4.72902 4.76480 4.82463 4.89218 4.93760 4.98638 5.01795 5.03751 5.08045 5.19090 5.21559 5.27481 5.31147 5.32896 5.34035 5.46101 5.56434 5.63140 5.75457 5.80641 5.97080 6.09682 6.45825 6.91954 7.24591 7.68877 8.69562 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027452 B = 0.002039 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.712433 B =13729.013547 C =13743.440227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.128 3.872 5 H 0.071 0.929 6 C -0.153 4.153 7 N -0.602 5.602 8 C 0.067 3.933 9 C 0.546 3.454 10 O -0.597 6.597 11 C -0.248 4.248 12 C 0.014 3.986 13 C -0.170 4.170 14 C -0.041 4.041 15 C -0.249 4.249 16 C 0.130 3.870 17 O -0.219 6.219 18 C -0.417 4.417 19 H 0.105 0.895 20 C -0.019 4.019 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.205 4.205 27 C -0.037 4.037 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.152 0.848 42 H 0.122 0.878 43 H 0.143 0.857 44 H 0.125 0.875 45 H 0.275 0.725 46 H 0.124 0.876 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.367 15.325 -16.496 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.157 4.157 4 C 0.025 3.975 5 H 0.089 0.911 6 C -0.211 4.211 7 N -0.334 5.334 8 C -0.075 4.075 9 C 0.339 3.661 10 O -0.481 6.481 11 C -0.268 4.268 12 C -0.005 4.005 13 C -0.171 4.171 14 C -0.059 4.059 15 C -0.268 4.268 16 C 0.078 3.922 17 O -0.124 6.124 18 C -0.492 4.492 19 H 0.122 0.878 20 C -0.217 4.217 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.225 4.225 27 C -0.055 4.055 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.169 0.831 42 H 0.139 0.861 43 H 0.160 0.840 44 H 0.142 0.858 45 H 0.084 0.916 46 H 0.142 0.858 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.236 15.137 -16.569 26.054 hybrid contribution 0.721 -1.007 0.357 1.289 sum -12.515 14.130 -16.211 24.881 Atomic orbital electron populations 1.21733 0.94588 1.01645 1.02438 1.21451 0.96637 0.97227 1.00735 1.21943 0.93029 0.96759 1.03999 1.21202 0.94765 0.95075 0.86452 0.91085 1.22071 1.00775 0.94585 1.03673 1.47806 1.49782 1.27223 1.08555 1.22072 1.02357 0.99294 0.83794 1.18575 0.77949 0.80252 0.89295 1.90747 1.60519 1.63170 1.33659 1.22886 1.05790 1.00502 0.97658 1.22176 0.90135 0.92417 0.95820 1.18771 1.05988 0.99403 0.92942 1.21302 0.93492 0.93705 0.97389 1.21196 1.08561 1.04770 0.92255 1.20185 0.92044 0.93399 0.86578 1.83887 1.63732 1.36615 1.28143 1.21889 1.34383 0.97320 0.95642 0.87760 1.26604 0.98332 1.03340 0.93473 1.70143 1.45426 1.40922 0.98489 0.84589 0.77916 0.74753 0.79018 1.18760 1.19530 1.17667 1.20416 1.04206 0.97894 0.99935 1.21254 0.96157 0.98290 0.89756 0.93354 0.91931 0.91882 0.93868 0.93803 0.89866 0.89364 0.90063 0.90657 0.93752 0.91370 0.88955 0.90044 0.83065 0.86055 0.83963 0.85761 0.91580 0.85779 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.12 -2.02 5.82 30.60 0.18 -1.84 16 3 C -0.12 -1.46 4.64 30.59 0.14 -1.32 16 4 C 0.13 2.14 2.64 44.99 0.12 2.26 16 5 H 0.07 1.63 6.90 -2.39 -0.02 1.62 16 6 C -0.15 -1.86 9.19 71.98 0.66 -1.20 16 7 N -0.60 -11.29 2.21 -827.79 -1.83 -13.13 16 8 C 0.07 0.76 9.21 127.77 1.18 1.94 16 9 C 0.55 14.38 7.60 86.33 0.66 15.04 16 10 O -0.60 -20.40 15.56 -4.42 -0.07 -20.47 16 11 C -0.25 -6.02 8.61 23.62 0.20 -5.81 16 12 C 0.01 0.40 9.45 23.82 0.23 0.63 16 13 C -0.17 -5.40 5.87 -20.13 -0.12 -5.51 16 14 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16 15 C -0.25 -10.50 9.14 22.34 0.20 -10.30 16 16 C 0.13 6.20 6.66 22.72 0.15 6.35 16 17 O -0.22 -12.66 9.74 -20.40 -0.20 -12.86 16 18 C -0.42 -23.46 9.48 67.93 0.64 -22.81 16 19 H 0.11 5.38 5.18 -2.91 -0.02 5.36 16 20 C -0.02 -1.03 5.49 84.86 0.47 -0.56 16 21 N -0.91 -54.29 13.67 21.62 0.30 -54.00 16 22 Si 1.02 41.57 29.55 68.60 2.03 43.59 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 25 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 26 C -0.21 -8.16 9.97 22.34 0.22 -7.94 16 27 C -0.04 -1.16 9.40 22.55 0.21 -0.94 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.88 7.75 -2.39 -0.02 0.86 16 33 H 0.08 0.76 6.48 -2.39 -0.02 0.75 16 34 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 37 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 0.68 6.34 -2.39 -0.02 0.66 16 40 H 0.08 0.88 6.09 -2.39 -0.01 0.86 16 41 H 0.15 2.84 4.21 -2.91 -0.01 2.82 16 42 H 0.12 3.49 7.52 -2.91 -0.02 3.47 16 43 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 44 H 0.12 5.31 5.62 -2.91 -0.02 5.29 16 45 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 47 H 0.16 3.59 6.16 -2.91 -0.02 3.57 16 Total: -1.00 -72.36 384.41 7.27 -65.09 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.97 Total: 26.13 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 6.08 Total: -34.37 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -1.54 Total: -67.12 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.27 Total: -33.33 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -72.36 7.27 -65.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075631738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.700 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds