Wall clock time and date at job start Tue Mar 31 2020 11:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47468 * 2 1 4 4 C 1.53003 * 109.46858 * 119.99652 * 2 1 3 5 5 C 1.53002 * 109.46866 * 173.62784 * 4 2 1 6 6 H 1.09000 * 109.44747 * 52.29283 * 5 4 2 7 7 C 1.54865 * 109.44780 * 172.20936 * 5 4 2 8 8 C 1.47099 * 110.32327 * 191.30596 * 7 5 4 9 9 C 1.52725 * 114.22657 * 297.17046 * 8 7 5 10 10 C 1.50884 * 109.27452 * 85.16517 * 9 8 7 11 11 C 1.53947 * 109.99224 * 267.94864 * 10 9 8 12 12 N 1.44572 * 109.45037 * 292.34351 * 5 4 2 13 13 S 1.65598 * 118.64654 * 329.25967 * 12 5 4 14 14 O 1.42098 * 104.27745 * 51.34732 * 13 12 5 15 15 O 1.42103 * 104.28077 * 179.20755 * 13 12 5 16 16 C 1.81405 * 104.44820 * 295.27871 * 13 12 5 17 17 C 1.53000 * 109.47327 * 180.02562 * 16 13 12 18 18 C 1.50702 * 109.47026 * 180.02562 * 17 16 13 19 19 H 1.07995 * 119.99753 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99731 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99996 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99879 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47128 * 89.99416 * 22 20 18 24 24 H 1.48500 * 109.47231 * 209.99760 * 22 20 18 25 25 H 1.48499 * 109.47094 * 329.99666 * 22 20 18 26 26 H 1.09001 * 109.46727 * 300.00623 * 1 2 3 27 27 H 1.08997 * 109.46797 * 59.99990 * 1 2 3 28 28 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46962 * 239.99739 * 2 1 3 30 30 H 1.09002 * 109.46985 * 59.99607 * 3 2 1 31 31 H 1.08993 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46426 * 300.00209 * 3 2 1 33 33 H 1.09000 * 109.46963 * 53.63157 * 4 2 1 34 34 H 1.09000 * 109.47404 * 293.62892 * 4 2 1 35 35 H 1.09003 * 109.32997 * 311.57044 * 7 5 4 36 36 H 1.08998 * 109.32641 * 71.04553 * 7 5 4 37 37 H 1.09003 * 108.50688 * 58.45529 * 8 7 5 38 38 H 1.08993 * 108.51259 * 175.94630 * 8 7 5 39 39 H 1.09004 * 109.61319 * 325.17544 * 9 8 7 40 40 H 1.08998 * 109.45334 * 205.05571 * 9 8 7 41 41 H 1.08997 * 109.36354 * 147.81806 * 10 9 8 42 42 H 1.08999 * 109.36639 * 28.07736 * 10 9 8 43 43 H 1.09000 * 108.94550 * 161.31602 * 11 10 9 44 44 H 1.09003 * 108.94779 * 279.93809 * 11 10 9 45 45 H 1.09001 * 109.46785 * 299.99805 * 16 13 12 46 46 H 1.09003 * 109.47269 * 59.99625 * 16 13 12 47 47 H 1.09001 * 109.46960 * 299.99614 * 17 16 13 48 48 H 1.09003 * 109.47321 * 59.99572 * 17 16 13 49 49 H 0.96993 * 120.00089 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5616 -0.8613 1.1719 6 1 4.0064 0.1143 0.9758 7 6 4.0979 -1.4110 2.5167 8 6 5.5640 -1.3015 2.5651 9 6 6.2894 -2.1251 1.5030 10 6 6.3674 -1.3297 0.2233 11 6 5.1577 -1.6533 -0.6722 12 7 3.9074 -1.7717 0.1033 13 16 2.8572 -2.9975 -0.2663 14 8 1.6043 -2.3478 -0.4314 15 8 3.4784 -3.6768 -1.3489 16 6 2.8417 -4.0428 1.2162 17 6 1.8963 -5.2255 0.9966 18 6 1.8831 -6.0935 2.2285 19 1 2.4886 -5.8282 3.0824 20 6 1.0985 -7.2267 2.2649 21 7 0.3614 -7.5499 1.2247 22 14 1.0825 -8.3030 3.7915 23 1 0.0170 -7.8366 4.7148 24 1 0.8183 -9.7113 3.4017 25 1 2.3997 -8.2165 4.4719 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.5865 -1.7106 1.3082 34 1 1.7727 -0.1457 2.1356 35 1 3.6661 -0.8392 3.3381 36 1 3.8107 -2.4575 2.6189 37 1 5.8371 -0.2538 2.4388 38 1 5.9031 -1.6279 3.5482 39 1 5.7439 -3.0515 1.3228 40 1 7.2966 -2.3572 1.8490 41 1 7.2864 -1.5840 -0.3048 42 1 6.3686 -0.2655 0.4587 43 1 5.0422 -0.8603 -1.4110 44 1 5.3429 -2.5938 -1.1910 45 1 3.8482 -4.4137 1.4097 46 1 2.4998 -3.4575 2.0699 47 1 0.8897 -4.8549 0.8028 48 1 2.2386 -5.8107 0.1430 49 1 -0.1907 -8.3469 1.2505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077403763.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:04 Heat of formation + Delta-G solvation = -83.098610 kcal Electronic energy + Delta-G solvation = -27691.336264 eV Core-core repulsion = 24166.257069 eV Total energy + Delta-G solvation = -3525.079195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.48320 -37.25111 -35.73181 -35.11993 -33.99244 -33.35858 -32.66888 -31.11855 -27.72090 -26.91105 -26.00162 -25.60975 -23.59230 -22.07549 -20.54364 -20.46167 -19.73450 -18.22553 -17.19244 -16.73067 -16.29541 -15.74756 -15.03510 -14.88692 -14.77593 -14.59046 -14.34232 -14.09029 -13.60202 -13.52931 -12.94536 -12.74133 -12.67518 -12.49832 -12.34427 -12.03609 -11.85261 -11.79400 -11.76069 -11.67033 -11.20393 -11.12108 -11.06663 -10.99192 -10.88907 -10.65668 -10.57901 -10.51438 -10.43794 -10.38031 -10.08296 -9.90152 -9.78305 -9.65558 -9.22332 -8.63654 -8.50073 -6.12284 -4.17597 0.82787 3.06423 3.25716 3.32182 3.34730 4.27667 4.37893 4.46503 4.60570 4.78366 4.83700 4.97041 5.06091 5.10913 5.20232 5.23072 5.29499 5.34233 5.42494 5.52617 5.55114 5.67700 5.71818 5.75227 5.76962 5.87452 5.89090 5.92714 6.06092 6.09000 6.09878 6.11767 6.15571 6.17117 6.21140 6.29660 6.32647 6.40966 6.54178 6.61770 6.82797 6.86964 6.99834 7.30595 7.36664 7.80824 8.18172 8.85772 9.47161 10.98756 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.005005 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.706885 B = 5593.080660 C = 6322.779504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.147 4.147 5 C 0.153 3.847 6 H 0.087 0.913 7 C -0.155 4.155 8 C -0.111 4.111 9 C -0.118 4.118 10 C -0.127 4.127 11 C 0.117 3.883 12 N -0.989 5.989 13 S 2.579 3.421 14 O -0.948 6.948 15 O -0.972 6.972 16 C -0.595 4.595 17 C 0.031 3.969 18 C -0.518 4.518 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.122 0.878 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.526 16.935 0.336 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 C -0.211 4.211 4 C -0.185 4.185 5 C 0.046 3.954 6 H 0.105 0.895 7 C -0.193 4.193 8 C -0.149 4.149 9 C -0.156 4.156 10 C -0.166 4.166 11 C -0.008 4.008 12 N -0.825 5.825 13 S 2.678 3.322 14 O -0.938 6.938 15 O -0.963 6.963 16 C -0.727 4.727 17 C -0.008 4.008 18 C -0.558 4.558 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.136 0.864 46 H 0.141 0.859 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.972 16.771 -0.599 19.030 hybrid contribution 0.254 -0.723 1.564 1.742 sum 9.227 16.049 0.965 18.537 Atomic orbital electron populations 1.21703 0.95421 1.02578 0.99667 1.21041 0.96065 0.93353 0.98984 1.22047 1.00475 0.97644 1.00944 1.22550 0.93082 1.03768 0.99138 1.20972 0.95144 0.93825 0.85438 0.89515 1.21648 0.96559 1.03341 0.97795 1.20399 0.95483 1.00011 0.98978 1.21110 1.00212 0.99381 0.94910 1.21742 0.97625 1.00477 0.96735 1.21662 0.82998 1.03324 0.92829 1.57258 1.34089 1.44947 1.46182 1.06011 0.74389 0.74196 0.77558 1.93658 1.42982 1.71428 1.85738 1.93492 1.76425 1.74872 1.51475 1.30672 1.10077 1.13723 1.18269 1.18932 0.92765 0.89749 0.99342 1.20994 1.26741 1.08151 0.99910 0.92113 1.25054 0.95225 0.97620 0.96508 1.69951 1.27450 1.26060 1.29408 0.86498 0.78481 0.79694 0.82793 1.20463 1.21016 1.19777 0.94187 0.93952 0.91083 0.89386 0.93361 0.93186 0.93377 0.89341 0.91050 0.90729 0.90456 0.92544 0.92542 0.91499 0.92039 0.91047 0.91746 0.92167 0.88650 0.86445 0.85946 0.94894 0.95113 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.00 37.16 0.33 -1.59 16 2 C -0.08 -1.03 1.85 -90.62 -0.17 -1.20 16 3 C -0.15 -1.69 8.98 37.16 0.33 -1.36 16 4 C -0.15 -1.93 3.60 -26.73 -0.10 -2.02 16 5 C 0.15 1.78 1.87 -67.98 -0.13 1.66 16 6 H 0.09 0.89 6.22 -51.93 -0.32 0.57 16 7 C -0.15 -1.68 4.95 -28.58 -0.14 -1.82 16 8 C -0.11 -1.08 5.16 -29.70 -0.15 -1.23 16 9 C -0.12 -1.21 5.51 -27.93 -0.15 -1.36 16 10 C -0.13 -1.18 5.72 -27.30 -0.16 -1.34 16 11 C 0.12 1.37 6.11 -2.94 -0.02 1.35 16 12 N -0.99 -13.18 2.02 -106.19 -0.21 -13.39 16 13 S 2.58 45.61 4.76 -107.50 -0.51 45.10 16 14 O -0.95 -17.81 10.22 -57.54 -0.59 -18.40 16 15 O -0.97 -20.10 16.08 -57.54 -0.92 -21.03 16 16 C -0.59 -11.33 4.40 37.16 0.16 -11.16 16 17 C 0.03 0.78 4.98 -27.88 -0.14 0.65 16 18 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 22 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.16 7.27 -51.93 -0.38 0.78 16 29 H 0.09 1.37 5.77 -51.93 -0.30 1.07 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.50 6.46 -51.93 -0.34 0.17 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.35 4.38 -51.89 -0.23 1.13 16 34 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 35 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.08 0.96 4.78 -51.93 -0.25 0.71 16 37 H 0.06 0.49 7.36 -51.93 -0.38 0.10 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.80 7.23 -51.93 -0.38 0.42 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.54 7.31 -51.93 -0.38 0.16 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 1.25 6.51 -51.93 -0.34 0.91 16 45 H 0.12 2.08 7.90 -51.92 -0.41 1.67 16 46 H 0.12 2.10 5.63 -51.92 -0.29 1.81 16 47 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -31.75 364.33 -10.36 -42.11 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.59 Total: 2.06 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: -0.73 Total: -32.40 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.52 Total: -39.04 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.51 Total: -39.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 45.61 SS G_CDS: -0.51 Total: 45.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.75 -10.36 -42.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077403763.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.993 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds