Wall clock time and date at job start Tue Mar 31 2020 11:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47468 * 2 1 4 4 C 1.53003 * 109.46858 * 119.99652 * 2 1 3 5 5 C 1.53002 * 109.46866 * 173.62784 * 4 2 1 6 6 H 1.09000 * 109.44747 * 52.29283 * 5 4 2 7 7 C 1.54865 * 109.44780 * 172.20936 * 5 4 2 8 8 C 1.47099 * 110.32327 * 191.30596 * 7 5 4 9 9 C 1.52725 * 114.22657 * 297.17046 * 8 7 5 10 10 C 1.50884 * 109.27452 * 85.16517 * 9 8 7 11 11 C 1.53947 * 109.99224 * 267.94864 * 10 9 8 12 12 N 1.44572 * 109.45037 * 292.34351 * 5 4 2 13 13 S 1.65598 * 118.64654 * 329.25967 * 12 5 4 14 14 O 1.42098 * 104.27745 * 51.34732 * 13 12 5 15 15 O 1.42103 * 104.28077 * 179.20755 * 13 12 5 16 16 C 1.81405 * 104.44820 * 295.27871 * 13 12 5 17 17 C 1.53000 * 109.47327 * 180.02562 * 16 13 12 18 18 C 1.50702 * 109.47026 * 180.02562 * 17 16 13 19 19 H 1.07995 * 119.99753 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99731 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99996 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99879 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47128 * 89.99416 * 22 20 18 24 24 H 1.48500 * 109.47231 * 209.99760 * 22 20 18 25 25 H 1.48499 * 109.47094 * 329.99666 * 22 20 18 26 26 H 1.09001 * 109.46727 * 300.00623 * 1 2 3 27 27 H 1.08997 * 109.46797 * 59.99990 * 1 2 3 28 28 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46962 * 239.99739 * 2 1 3 30 30 H 1.09002 * 109.46985 * 59.99607 * 3 2 1 31 31 H 1.08993 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46426 * 300.00209 * 3 2 1 33 33 H 1.09000 * 109.46963 * 53.63157 * 4 2 1 34 34 H 1.09000 * 109.47404 * 293.62892 * 4 2 1 35 35 H 1.09003 * 109.32997 * 311.57044 * 7 5 4 36 36 H 1.08998 * 109.32641 * 71.04553 * 7 5 4 37 37 H 1.09003 * 108.50688 * 58.45529 * 8 7 5 38 38 H 1.08993 * 108.51259 * 175.94630 * 8 7 5 39 39 H 1.09004 * 109.61319 * 325.17544 * 9 8 7 40 40 H 1.08998 * 109.45334 * 205.05571 * 9 8 7 41 41 H 1.08997 * 109.36354 * 147.81806 * 10 9 8 42 42 H 1.08999 * 109.36639 * 28.07736 * 10 9 8 43 43 H 1.09000 * 108.94550 * 161.31602 * 11 10 9 44 44 H 1.09003 * 108.94779 * 279.93809 * 11 10 9 45 45 H 1.09001 * 109.46785 * 299.99805 * 16 13 12 46 46 H 1.09003 * 109.47269 * 59.99625 * 16 13 12 47 47 H 1.09001 * 109.46960 * 299.99614 * 17 16 13 48 48 H 1.09003 * 109.47321 * 59.99572 * 17 16 13 49 49 H 0.96993 * 120.00089 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5616 -0.8613 1.1719 6 1 4.0064 0.1143 0.9758 7 6 4.0979 -1.4110 2.5167 8 6 5.5640 -1.3015 2.5651 9 6 6.2894 -2.1251 1.5030 10 6 6.3674 -1.3297 0.2233 11 6 5.1577 -1.6533 -0.6722 12 7 3.9074 -1.7717 0.1033 13 16 2.8572 -2.9975 -0.2663 14 8 1.6043 -2.3478 -0.4314 15 8 3.4784 -3.6768 -1.3489 16 6 2.8417 -4.0428 1.2162 17 6 1.8963 -5.2255 0.9966 18 6 1.8831 -6.0935 2.2285 19 1 2.4886 -5.8282 3.0824 20 6 1.0985 -7.2267 2.2649 21 7 0.3614 -7.5499 1.2247 22 14 1.0825 -8.3030 3.7915 23 1 0.0170 -7.8366 4.7148 24 1 0.8183 -9.7113 3.4017 25 1 2.3997 -8.2165 4.4719 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.5865 -1.7106 1.3082 34 1 1.7727 -0.1457 2.1356 35 1 3.6661 -0.8392 3.3381 36 1 3.8107 -2.4575 2.6189 37 1 5.8371 -0.2538 2.4388 38 1 5.9031 -1.6279 3.5482 39 1 5.7439 -3.0515 1.3228 40 1 7.2966 -2.3572 1.8490 41 1 7.2864 -1.5840 -0.3048 42 1 6.3686 -0.2655 0.4587 43 1 5.0422 -0.8603 -1.4110 44 1 5.3429 -2.5938 -1.1910 45 1 3.8482 -4.4137 1.4097 46 1 2.4998 -3.4575 2.0699 47 1 0.8897 -4.8549 0.8028 48 1 2.2386 -5.8107 0.1430 49 1 -0.1907 -8.3469 1.2505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077403763.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:04 Heat of formation + Delta-G solvation = -101.807627 kcal Electronic energy + Delta-G solvation = -27692.147548 eV Core-core repulsion = 24166.257069 eV Total energy + Delta-G solvation = -3525.890479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45431 -38.56216 -37.13450 -36.35478 -35.95015 -34.37166 -33.68134 -32.98321 -28.69363 -27.89219 -27.62107 -26.86135 -24.53770 -23.84100 -21.69012 -21.34625 -20.80470 -19.57821 -18.82569 -18.07507 -17.67059 -17.15399 -16.56057 -16.21573 -15.98226 -15.85060 -15.30271 -15.16854 -15.05175 -14.60533 -14.47967 -13.94028 -13.76728 -13.59098 -13.53679 -13.41173 -13.13276 -13.06661 -12.99901 -12.93700 -12.82581 -12.80681 -12.33734 -12.22200 -12.18255 -11.96639 -11.83636 -11.79937 -11.53559 -11.44469 -11.34807 -11.22262 -11.01625 -10.84537 -10.79858 -10.65662 -9.74105 -8.27067 -6.41142 -0.61843 1.38963 1.40923 1.51970 1.80429 2.36718 2.84668 3.06177 3.30988 3.50404 3.82047 3.93418 4.03732 4.06585 4.13383 4.20889 4.24260 4.33977 4.38652 4.43320 4.52492 4.64582 4.72499 4.82450 4.86525 4.89502 4.92798 4.94857 5.04067 5.12035 5.15564 5.21165 5.25860 5.26486 5.27828 5.29312 5.33637 5.38335 5.44003 5.49808 5.55416 5.59097 5.67263 5.76465 5.79546 5.98883 6.05630 6.72035 7.29021 8.85266 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.005005 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.706885 B = 5593.080660 C = 6322.779504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.152 4.152 5 C 0.154 3.846 6 H 0.116 0.884 7 C -0.155 4.155 8 C -0.111 4.111 9 C -0.125 4.125 10 C -0.119 4.119 11 C 0.108 3.892 12 N -0.974 5.974 13 S 2.596 3.404 14 O -0.961 6.961 15 O -1.007 7.007 16 C -0.593 4.593 17 C 0.028 3.972 18 C -0.537 4.537 19 H 0.073 0.927 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.972 3.028 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.258 1.258 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.128 0.872 46 H 0.141 0.859 47 H 0.006 0.994 48 H -0.002 1.002 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 19.432 2.420 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 C -0.204 4.204 4 C -0.190 4.190 5 C 0.048 3.952 6 H 0.134 0.866 7 C -0.194 4.194 8 C -0.148 4.148 9 C -0.163 4.163 10 C -0.157 4.157 11 C -0.016 4.016 12 N -0.813 5.813 13 S 2.695 3.305 14 O -0.951 6.951 15 O -0.997 6.997 16 C -0.724 4.724 17 C -0.011 4.011 18 C -0.575 4.575 19 H 0.091 0.909 20 C -0.201 4.201 21 N -0.574 5.574 22 Si 0.795 3.205 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.182 1.182 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.146 0.854 46 H 0.159 0.841 47 H 0.025 0.975 48 H 0.017 0.983 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.996 19.258 1.500 22.227 hybrid contribution -0.377 -1.426 0.860 1.707 sum 10.619 17.832 2.360 20.888 Atomic orbital electron populations 1.21706 0.96342 1.00705 1.00761 1.21024 0.95444 0.95269 0.98202 1.21969 1.01315 0.95322 1.01772 1.22570 0.94072 1.02504 0.99894 1.21183 0.94316 0.94500 0.85225 0.86590 1.21673 0.97711 1.02275 0.97708 1.20397 0.94279 1.01158 0.98974 1.21182 1.00707 0.98624 0.95760 1.21735 0.96663 1.01559 0.95791 1.21915 0.83049 1.03021 0.93631 1.56940 1.34204 1.43146 1.46962 1.05259 0.74562 0.74341 0.76388 1.93672 1.44397 1.71328 1.85701 1.93439 1.77185 1.76275 1.52822 1.30595 1.08932 1.12199 1.20630 1.18743 0.92842 0.91683 0.97807 1.21481 1.26683 1.08614 1.00769 0.90866 1.26100 0.94690 0.99309 0.99975 1.70102 1.28519 1.26846 1.31945 0.85340 0.79255 0.77339 0.78516 1.19432 1.20788 1.18222 0.92501 0.93446 0.94418 0.91845 0.91929 0.91734 0.93213 0.92255 0.88752 0.88826 0.92561 0.90377 0.92084 0.93991 0.90795 0.89518 0.89572 0.90448 0.90642 0.85379 0.84096 0.97529 0.98348 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.00 71.98 0.65 -3.23 16 2 C -0.08 -2.10 1.85 -10.79 -0.02 -2.12 16 3 C -0.15 -2.75 8.98 71.98 0.65 -2.11 16 4 C -0.15 -3.76 3.60 30.60 0.11 -3.65 16 5 C 0.15 3.18 1.87 45.99 0.09 3.27 16 6 H 0.12 1.83 6.22 -2.39 -0.01 1.81 16 7 C -0.15 -2.93 4.95 29.40 0.15 -2.78 16 8 C -0.11 -1.74 5.16 28.67 0.15 -1.60 16 9 C -0.12 -2.22 5.51 29.81 0.16 -2.05 16 10 C -0.12 -1.81 5.72 30.23 0.17 -1.64 16 11 C 0.11 2.35 6.11 86.49 0.53 2.88 16 12 N -0.97 -24.97 2.02 -489.87 -0.99 -25.96 16 13 S 2.60 95.56 4.76 -56.49 -0.27 95.29 16 14 O -0.96 -37.97 10.22 -127.65 -1.30 -39.28 16 15 O -1.01 -43.78 16.08 -127.65 -2.05 -45.83 16 16 C -0.59 -23.51 4.40 71.98 0.32 -23.19 16 17 C 0.03 1.50 4.98 29.85 0.15 1.65 16 18 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 19 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 20 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 21 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 22 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.29 7.27 -2.39 -0.02 1.27 16 29 H 0.06 1.97 5.77 -2.39 -0.01 1.96 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.02 6.46 -2.39 -0.02 1.00 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 1.83 4.38 -2.41 -0.01 1.82 16 34 H 0.09 1.88 8.06 -2.39 -0.02 1.86 16 35 H 0.09 1.44 8.05 -2.39 -0.02 1.42 16 36 H 0.06 1.31 4.78 -2.39 -0.01 1.30 16 37 H 0.08 0.93 7.36 -2.39 -0.02 0.91 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.04 0.95 7.23 -2.39 -0.02 0.93 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 0.99 7.31 -2.39 -0.02 0.97 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.97 6.51 -2.39 -0.02 1.96 16 45 H 0.13 4.70 7.90 -2.39 -0.02 4.68 16 46 H 0.14 4.96 5.63 -2.39 -0.01 4.95 16 47 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 49 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -72.39 364.33 2.40 -69.99 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.91 Total: 21.57 kcal Atomic # 6 Polarization: -68.00 SS G_CDS: 3.79 Total: -64.21 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -0.70 Total: -83.23 kcal Atomic # 8 Polarization: -81.76 SS G_CDS: -3.36 Total: -85.11 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 95.56 SS G_CDS: -0.27 Total: 95.29 kcal Total: -72.39 2.40 -69.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077403763.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.815 kcal (2) G-P(sol) polarization free energy of solvation -72.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds