Wall clock time and date at job start Tue Mar 31 2020 12:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47145 * 2 1 4 4 C 1.53005 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.08994 * 115.54993 * 29.27591 * 4 3 2 6 6 C 1.53005 * 117.49604 * 243.61166 * 4 3 2 7 7 C 1.53001 * 117.51583 * 174.98523 * 4 3 2 8 8 H 1.09003 * 117.49847 * 359.97438 * 7 4 3 9 9 C 1.50697 * 117.49608 * 214.96965 * 7 4 3 10 10 O 1.21292 * 120.00274 * 359.97438 * 9 7 4 11 11 N 1.34779 * 119.99998 * 179.97438 * 9 7 4 12 12 C 1.39924 * 120.00019 * 175.37921 * 11 9 7 13 13 C 1.38933 * 120.03988 * 35.09259 * 12 11 9 14 14 C 1.38125 * 120.03787 * 179.97438 * 13 12 11 15 15 C 1.38217 * 120.12284 * 0.02562 * 14 13 12 16 16 C 1.38769 * 120.08468 * 359.97438 * 15 14 13 17 17 O 1.35897 * 120.01661 * 180.02562 * 16 15 14 18 18 C 1.42905 * 117.00128 * 359.97438 * 17 16 15 19 19 C 1.52998 * 109.46921 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47113 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99540 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00241 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00093 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99932 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 89.99653 * 24 22 20 26 26 H 1.48504 * 109.47121 * 209.99977 * 24 22 20 27 27 H 1.48500 * 109.47126 * 329.99812 * 24 22 20 28 28 C 1.38618 * 119.96115 * 359.78781 * 16 15 14 29 29 H 1.08994 * 109.47002 * 300.00061 * 1 2 3 30 30 H 1.08999 * 109.47291 * 59.99989 * 1 2 3 31 31 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47229 * 239.99830 * 2 1 3 33 33 H 1.08999 * 109.47291 * 120.00010 * 2 1 3 34 34 H 1.08998 * 109.46650 * 60.00531 * 3 2 1 35 35 H 1.08999 * 109.47034 * 300.00168 * 3 2 1 36 36 H 1.09000 * 117.49893 * 359.97438 * 6 4 3 37 37 H 1.08994 * 117.49804 * 144.99943 * 6 4 3 38 38 H 0.96998 * 120.00090 * 355.37776 * 11 9 7 39 39 H 1.07996 * 119.97941 * 0.02562 * 13 12 11 40 40 H 1.07992 * 119.93468 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.95522 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.46679 * 300.00202 * 18 17 16 43 43 H 1.08997 * 109.47085 * 60.00252 * 18 17 16 44 44 H 1.08991 * 109.47321 * 299.99932 * 19 18 17 45 45 H 1.09006 * 109.47148 * 60.00392 * 19 18 17 46 46 H 0.96997 * 119.99727 * 180.02562 * 23 22 20 47 47 H 1.07998 * 120.06557 * 180.25035 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0399 0.5848 -0.4818 6 6 4.2770 2.0455 1.2150 7 6 4.2769 2.7942 -0.1194 8 1 3.6519 3.6839 -0.1975 9 6 5.5695 2.8379 -0.8928 10 8 6.0118 1.8250 -1.3924 11 7 6.2341 4.0024 -1.0294 12 6 7.4812 4.0261 -1.6635 13 6 7.7358 3.1719 -2.7292 14 6 8.9667 3.1956 -3.3555 15 6 9.9479 4.0681 -2.9238 16 6 9.6990 4.9235 -1.8599 17 8 10.6646 5.7812 -1.4369 18 6 11.9121 5.7481 -2.1331 19 6 12.8657 6.7755 -1.5199 20 6 14.1816 6.7402 -2.2537 21 1 14.3236 6.0532 -3.0749 22 6 15.2044 7.5840 -1.8760 23 7 16.3526 7.5534 -2.5166 24 14 14.9595 8.7705 -0.4542 25 1 15.3662 8.1140 0.8142 26 1 15.7892 9.9826 -0.6725 27 1 13.5282 9.1583 -0.3740 28 6 8.4633 4.9061 -1.2320 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.6521 2.4426 2.0149 37 1 5.2119 1.5846 1.5333 38 1 5.8479 4.8242 -0.6882 39 1 6.9706 2.4895 -3.0687 40 1 9.1630 2.5306 -4.1835 41 1 10.9095 4.0841 -3.4152 42 1 12.3480 4.7525 -2.0503 43 1 11.7483 5.9868 -3.1839 44 1 12.4296 7.7709 -1.6030 45 1 13.0297 6.5372 -0.4690 46 1 17.0723 8.1468 -2.2506 47 1 8.2665 5.5739 -0.4064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079640853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:49 Heat of formation + Delta-G solvation = -45.229915 kcal Electronic energy + Delta-G solvation = -24708.062919 eV Core-core repulsion = 21049.181882 eV Total energy + Delta-G solvation = -3658.881036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88497 -39.60709 -38.07111 -36.88475 -34.68678 -34.30918 -33.33963 -31.14878 -30.04585 -29.14863 -27.89593 -25.46754 -24.69617 -22.65831 -22.51599 -21.99199 -20.99581 -20.42069 -20.23247 -18.32039 -17.74378 -16.79140 -16.16413 -15.76117 -15.64781 -15.57971 -15.39942 -15.34786 -14.87578 -14.43758 -14.12506 -13.79964 -13.54998 -13.26441 -13.18110 -12.93838 -12.71165 -12.55852 -12.51527 -11.97635 -11.84804 -11.74820 -11.55281 -11.51735 -11.28295 -10.94384 -10.79828 -10.68353 -10.48278 -10.37557 -10.20311 -10.01912 -9.93539 -9.80525 -9.35738 -8.63699 -8.39674 -7.84651 -6.14597 -4.15648 1.26145 1.62592 2.21821 2.65802 3.27399 3.34665 3.36805 3.39712 3.76507 3.90386 4.10317 4.26167 4.33805 4.37849 4.59786 4.64373 4.69975 4.78906 4.96798 5.06081 5.19508 5.24313 5.25829 5.30783 5.34045 5.34430 5.38482 5.46312 5.50487 5.60735 5.61724 5.73996 5.76031 5.80506 5.91161 5.93025 5.93811 6.24617 6.32413 6.40321 6.52824 6.65107 6.89296 7.09121 7.17088 7.21483 7.60942 7.85842 7.88638 8.37605 8.86205 9.45593 10.97940 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036190 B = 0.001787 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.508930 B =15665.913990 C =16214.240659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.115 4.115 5 H 0.120 0.880 6 C -0.146 4.146 7 C -0.193 4.193 8 H 0.126 0.874 9 C 0.543 3.457 10 O -0.518 6.518 11 N -0.667 5.667 12 C 0.174 3.826 13 C -0.168 4.168 14 C -0.063 4.063 15 C -0.221 4.221 16 C 0.161 3.839 17 O -0.319 6.319 18 C 0.072 3.928 19 C -0.009 4.009 20 C -0.528 4.528 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.897 5.897 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 C -0.187 4.187 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.411 0.589 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.023 0.977 46 H 0.266 0.734 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.486 -11.201 5.611 33.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.134 4.134 5 H 0.137 0.863 6 C -0.184 4.184 7 C -0.214 4.214 8 H 0.144 0.856 9 C 0.331 3.669 10 O -0.393 6.393 11 N -0.311 5.311 12 C 0.080 3.920 13 C -0.188 4.188 14 C -0.082 4.082 15 C -0.240 4.240 16 C 0.114 3.886 17 O -0.232 6.232 18 C -0.002 4.002 19 C -0.046 4.046 20 C -0.565 4.565 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.707 3.293 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.188 1.188 28 C -0.208 4.208 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.247 0.753 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -31.014 -11.714 5.432 33.595 hybrid contribution 0.102 1.118 0.682 1.314 sum -30.912 -10.596 6.114 33.245 Atomic orbital electron populations 1.21780 0.95793 1.01738 1.01783 1.21505 0.95728 0.96364 1.02452 1.21260 0.91692 0.97562 1.02295 1.22497 0.94835 0.95072 1.00992 0.86252 1.23148 1.03309 1.01716 0.90191 1.22262 0.97243 0.99419 1.02448 0.85618 1.19806 0.84764 0.82721 0.79620 1.90715 1.67704 1.33919 1.46959 1.43372 1.18540 1.10886 1.58330 1.17307 0.84646 0.97406 0.92609 1.21047 0.98920 1.02367 0.96441 1.20827 0.92269 0.96727 0.98361 1.21427 1.01785 1.00422 1.00388 1.18755 0.88672 0.89170 0.92045 1.86106 1.23471 1.55725 1.57903 1.23104 0.79887 1.01368 0.95812 1.19585 0.93769 0.94173 0.97085 1.20846 0.95125 1.22586 1.17986 0.90707 1.24927 0.94800 0.96744 0.96488 1.69894 1.03859 1.38809 1.40977 0.86758 0.78840 0.80836 0.82824 1.20070 1.21161 1.18781 1.19979 0.91386 1.05283 1.04196 0.92777 0.92721 0.92678 0.91725 0.91746 0.91530 0.91306 0.87555 0.88082 0.75305 0.84710 0.85619 0.84883 0.92404 0.92366 0.95410 0.95853 0.92441 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.62 5.89 -26.73 -0.16 -0.78 16 3 C -0.09 -0.46 5.50 -26.73 -0.15 -0.61 16 4 C -0.12 -0.79 5.25 -90.61 -0.48 -1.26 16 5 H 0.12 1.03 7.60 -51.93 -0.39 0.64 16 6 C -0.15 -0.92 9.88 -26.73 -0.26 -1.18 16 7 C -0.19 -1.36 5.91 -91.77 -0.54 -1.90 16 8 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 9 C 0.54 5.83 7.46 -10.99 -0.08 5.75 16 10 O -0.52 -7.43 13.69 5.55 0.08 -7.35 16 11 N -0.67 -6.77 5.34 -9.88 -0.05 -6.82 16 12 C 0.17 2.34 6.30 -83.71 -0.53 1.81 16 13 C -0.17 -2.38 8.69 -39.37 -0.34 -2.72 16 14 C -0.06 -0.88 10.03 -39.63 -0.40 -1.28 16 15 C -0.22 -3.47 9.04 -39.39 -0.36 -3.82 16 16 C 0.16 2.73 6.68 -39.24 -0.26 2.46 16 17 O -0.32 -6.19 10.13 -19.42 -0.20 -6.39 16 18 C 0.07 1.48 4.68 37.16 0.17 1.66 16 19 C -0.01 -0.21 4.41 -27.88 -0.12 -0.33 16 20 C -0.53 -14.84 9.66 -34.44 -0.33 -15.17 16 21 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 24 Si 0.88 21.49 27.47 -169.99 -4.67 16.83 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 28 C -0.19 -2.73 9.90 -39.25 -0.39 -3.12 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.28 7.88 -51.93 -0.41 -0.13 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.11 0.46 8.03 -51.93 -0.42 0.05 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.41 2.79 8.82 -40.82 -0.36 2.43 16 39 H 0.14 1.92 6.22 -52.49 -0.33 1.60 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 42 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 43 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 44 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 45 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -32.67 388.48 -9.78 -42.45 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.61 Total: 0.68 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -3.95 Total: -18.81 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.72 Total: -33.27 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.12 Total: -13.74 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.67 -9.78 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079640853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.779 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds