Wall clock time and date at job start Tue Mar 31 2020 12:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47145 * 2 1 4 4 C 1.53005 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.08994 * 115.54993 * 29.27591 * 4 3 2 6 6 C 1.53005 * 117.49604 * 243.61166 * 4 3 2 7 7 C 1.53001 * 117.51583 * 174.98523 * 4 3 2 8 8 H 1.09003 * 117.49847 * 359.97438 * 7 4 3 9 9 C 1.50697 * 117.49608 * 214.96965 * 7 4 3 10 10 O 1.21292 * 120.00274 * 359.97438 * 9 7 4 11 11 N 1.34779 * 119.99998 * 179.97438 * 9 7 4 12 12 C 1.39924 * 120.00019 * 175.37921 * 11 9 7 13 13 C 1.38933 * 120.03988 * 35.09259 * 12 11 9 14 14 C 1.38125 * 120.03787 * 179.97438 * 13 12 11 15 15 C 1.38217 * 120.12284 * 0.02562 * 14 13 12 16 16 C 1.38769 * 120.08468 * 359.97438 * 15 14 13 17 17 O 1.35897 * 120.01661 * 180.02562 * 16 15 14 18 18 C 1.42905 * 117.00128 * 359.97438 * 17 16 15 19 19 C 1.52998 * 109.46921 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47113 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99540 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00241 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00093 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99932 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 89.99653 * 24 22 20 26 26 H 1.48504 * 109.47121 * 209.99977 * 24 22 20 27 27 H 1.48500 * 109.47126 * 329.99812 * 24 22 20 28 28 C 1.38618 * 119.96115 * 359.78781 * 16 15 14 29 29 H 1.08994 * 109.47002 * 300.00061 * 1 2 3 30 30 H 1.08999 * 109.47291 * 59.99989 * 1 2 3 31 31 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47229 * 239.99830 * 2 1 3 33 33 H 1.08999 * 109.47291 * 120.00010 * 2 1 3 34 34 H 1.08998 * 109.46650 * 60.00531 * 3 2 1 35 35 H 1.08999 * 109.47034 * 300.00168 * 3 2 1 36 36 H 1.09000 * 117.49893 * 359.97438 * 6 4 3 37 37 H 1.08994 * 117.49804 * 144.99943 * 6 4 3 38 38 H 0.96998 * 120.00090 * 355.37776 * 11 9 7 39 39 H 1.07996 * 119.97941 * 0.02562 * 13 12 11 40 40 H 1.07992 * 119.93468 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.95522 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.46679 * 300.00202 * 18 17 16 43 43 H 1.08997 * 109.47085 * 60.00252 * 18 17 16 44 44 H 1.08991 * 109.47321 * 299.99932 * 19 18 17 45 45 H 1.09006 * 109.47148 * 60.00392 * 19 18 17 46 46 H 0.96997 * 119.99727 * 180.02562 * 23 22 20 47 47 H 1.07998 * 120.06557 * 180.25035 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0399 0.5848 -0.4818 6 6 4.2770 2.0455 1.2150 7 6 4.2769 2.7942 -0.1194 8 1 3.6519 3.6839 -0.1975 9 6 5.5695 2.8379 -0.8928 10 8 6.0118 1.8250 -1.3924 11 7 6.2341 4.0024 -1.0294 12 6 7.4812 4.0261 -1.6635 13 6 7.7358 3.1719 -2.7292 14 6 8.9667 3.1956 -3.3555 15 6 9.9479 4.0681 -2.9238 16 6 9.6990 4.9235 -1.8599 17 8 10.6646 5.7812 -1.4369 18 6 11.9121 5.7481 -2.1331 19 6 12.8657 6.7755 -1.5199 20 6 14.1816 6.7402 -2.2537 21 1 14.3236 6.0532 -3.0749 22 6 15.2044 7.5840 -1.8760 23 7 16.3526 7.5534 -2.5166 24 14 14.9595 8.7705 -0.4542 25 1 15.3662 8.1140 0.8142 26 1 15.7892 9.9826 -0.6725 27 1 13.5282 9.1583 -0.3740 28 6 8.4633 4.9061 -1.2320 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.6521 2.4426 2.0149 37 1 5.2119 1.5846 1.5333 38 1 5.8479 4.8242 -0.6882 39 1 6.9706 2.4895 -3.0687 40 1 9.1630 2.5306 -4.1835 41 1 10.9095 4.0841 -3.4152 42 1 12.3480 4.7525 -2.0503 43 1 11.7483 5.9868 -3.1839 44 1 12.4296 7.7709 -1.6030 45 1 13.0297 6.5372 -0.4690 46 1 17.0723 8.1468 -2.2506 47 1 8.2665 5.5739 -0.4064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079640853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:48 Heat of formation + Delta-G solvation = -63.367736 kcal Electronic energy + Delta-G solvation = -24708.849433 eV Core-core repulsion = 21049.181882 eV Total energy + Delta-G solvation = -3659.667551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82699 -40.78125 -38.96945 -37.85858 -35.76325 -35.33955 -34.73333 -32.94950 -31.32519 -30.33696 -28.35767 -27.17873 -25.63249 -23.82466 -23.44789 -22.81241 -22.06587 -21.45914 -21.07145 -19.65213 -18.77726 -18.47913 -17.26093 -17.02698 -16.90216 -16.72368 -16.36705 -16.14508 -15.98531 -15.65875 -15.17219 -14.82447 -14.63616 -14.46714 -14.32916 -14.19419 -13.76899 -13.40885 -13.35680 -13.19783 -12.95816 -12.87471 -12.66360 -12.32616 -12.21146 -12.07179 -11.94165 -11.84309 -11.67311 -11.66524 -11.44013 -11.29680 -11.17976 -11.01197 -10.81789 -10.80680 -9.51619 -9.06073 -8.34866 -6.41933 0.15697 0.42918 1.36554 1.37389 1.37847 1.50495 1.77856 2.33387 2.40461 2.71313 2.85364 3.00352 3.50370 3.69431 3.82072 3.84432 4.08571 4.11814 4.16398 4.21161 4.22505 4.25557 4.30151 4.35942 4.40994 4.49997 4.63055 4.65544 4.71168 4.84228 4.88597 4.95474 4.99121 5.06895 5.08933 5.20897 5.21456 5.23973 5.30376 5.34411 5.37144 5.41911 5.47193 5.52174 5.53108 5.84365 6.16012 6.35538 6.45769 6.64073 7.04285 7.23428 8.80906 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036190 B = 0.001787 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.508930 B =15665.913990 C =16214.240659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.084 4.084 4 C -0.120 4.120 5 H 0.094 0.906 6 C -0.137 4.137 7 C -0.189 4.189 8 H 0.158 0.842 9 C 0.539 3.461 10 O -0.559 6.559 11 N -0.656 5.656 12 C 0.178 3.822 13 C -0.172 4.172 14 C -0.062 4.062 15 C -0.232 4.232 16 C 0.133 3.867 17 O -0.329 6.329 18 C 0.085 3.915 19 C -0.006 4.006 20 C -0.539 4.539 21 H 0.041 0.959 22 C 0.014 3.986 23 N -0.943 5.943 24 Si 0.949 3.051 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.248 1.248 28 C -0.184 4.184 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.085 0.915 38 H 0.429 0.571 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.130 0.870 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.030 0.970 45 H 0.027 0.973 46 H 0.270 0.730 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.374 -10.324 7.505 36.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.121 4.121 4 C -0.139 4.139 5 H 0.112 0.888 6 C -0.174 4.174 7 C -0.210 4.210 8 H 0.176 0.824 9 C 0.329 3.671 10 O -0.437 6.437 11 N -0.301 5.301 12 C 0.083 3.917 13 C -0.193 4.193 14 C -0.081 4.081 15 C -0.252 4.252 16 C 0.087 3.913 17 O -0.243 6.243 18 C 0.011 3.989 19 C -0.043 4.043 20 C -0.577 4.577 21 H 0.060 0.940 22 C -0.184 4.184 23 N -0.583 5.583 24 Si 0.772 3.228 25 H -0.190 1.190 26 H -0.205 1.205 27 H -0.172 1.172 28 C -0.205 4.205 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.104 0.896 38 H 0.269 0.731 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.148 0.852 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.045 0.955 46 H 0.079 0.921 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -33.947 -10.827 7.336 36.380 hybrid contribution 0.925 0.699 0.020 1.160 sum -33.022 -10.128 7.356 35.315 Atomic orbital electron populations 1.21769 0.95114 1.01907 1.02168 1.21508 0.96298 0.96509 1.01898 1.21234 0.90131 0.97540 1.03183 1.22477 0.95927 0.94150 1.01357 0.88791 1.23237 1.02915 1.00848 0.90415 1.22333 0.95561 1.00780 1.02340 0.82412 1.20518 0.85559 0.81992 0.79067 1.90700 1.68944 1.35350 1.48719 1.43356 1.17298 1.11857 1.57625 1.17372 0.85718 0.96409 0.92182 1.21207 0.98954 1.02389 0.96724 1.21061 0.91779 0.96451 0.98769 1.21490 1.02185 1.00966 1.00530 1.19038 0.89021 0.89864 0.93410 1.86022 1.23260 1.56941 1.58113 1.22712 0.80356 1.00213 0.95626 1.19441 0.92666 0.95381 0.96820 1.21130 0.97252 1.21830 1.17456 0.94031 1.25879 0.94321 0.98741 0.99461 1.70030 1.05003 1.40186 1.43037 0.85671 0.79595 0.78374 0.79140 1.19041 1.20485 1.17203 1.20130 0.90563 1.05542 1.04296 0.92058 0.92627 0.92694 0.92823 0.91874 0.89861 0.91068 0.84799 0.89623 0.73148 0.84793 0.83447 0.85208 0.92421 0.92152 0.95179 0.95472 0.92109 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.38 16 2 C -0.12 -1.11 5.89 30.59 0.18 -0.93 16 3 C -0.08 -0.66 5.50 30.60 0.17 -0.49 16 4 C -0.12 -1.46 5.25 -10.79 -0.06 -1.52 16 5 H 0.09 1.65 7.60 -2.39 -0.02 1.63 16 6 C -0.14 -1.38 9.88 30.60 0.30 -1.08 16 7 C -0.19 -2.19 5.91 -11.54 -0.07 -2.25 16 8 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 9 C 0.54 10.74 7.46 87.66 0.65 11.39 16 10 O -0.56 -15.87 13.69 -3.07 -0.04 -15.91 16 11 N -0.66 -11.91 5.34 -303.54 -1.62 -13.53 16 12 C 0.18 4.52 6.30 38.14 0.24 4.76 16 13 C -0.17 -4.74 8.69 22.41 0.19 -4.55 16 14 C -0.06 -1.70 10.03 22.24 0.22 -1.47 16 15 C -0.23 -7.25 9.04 22.39 0.20 -7.05 16 16 C 0.13 4.42 6.68 22.49 0.15 4.57 16 17 O -0.33 -12.58 10.13 -92.39 -0.94 -13.52 16 18 C 0.09 3.52 4.68 71.98 0.34 3.85 16 19 C -0.01 -0.27 4.41 29.85 0.13 -0.14 16 20 C -0.54 -30.87 9.66 25.60 0.25 -30.62 16 21 H 0.04 2.58 7.99 -2.91 -0.02 2.55 16 22 C 0.01 0.82 5.47 84.65 0.46 1.28 16 23 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 24 Si 0.95 43.86 27.47 68.60 1.88 45.75 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 27 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 28 C -0.18 -5.09 9.90 22.48 0.22 -4.87 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.41 7.88 -2.39 -0.02 0.39 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.13 0.64 8.03 -2.39 -0.02 0.62 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.43 4.54 8.82 -92.71 -0.82 3.72 16 39 H 0.13 3.75 6.22 -2.91 -0.02 3.73 16 40 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 41 H 0.13 4.05 6.29 -2.91 -0.02 4.03 16 42 H 0.06 2.34 7.66 -2.39 -0.02 2.32 16 43 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 44 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 45 H 0.03 1.27 7.57 -2.38 -0.02 1.25 16 46 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 47 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -71.63 388.48 3.98 -67.66 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.09 Total: 17.05 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 4.31 Total: -29.50 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.32 Total: -71.52 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.98 Total: -29.43 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Total: -71.63 3.98 -67.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079640853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.290 kcal (2) G-P(sol) polarization free energy of solvation -71.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds