Wall clock time and date at job start Tue Mar 31 2020 12:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47716 * 2 1 4 4 C 1.52990 * 109.47523 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55264 * 330.67623 * 4 3 2 6 6 C 1.53005 * 117.49914 * 116.37653 * 4 3 2 7 7 C 1.53002 * 59.99986 * 107.49471 * 6 4 3 8 8 H 1.08998 * 117.50187 * 107.48935 * 7 6 4 9 9 C 1.50704 * 117.49896 * 252.51877 * 7 6 4 10 10 O 1.21285 * 120.00491 * 68.61475 * 9 7 6 11 11 N 1.34780 * 119.99421 * 248.61783 * 9 7 6 12 12 C 1.39925 * 119.99504 * 175.37575 * 11 9 7 13 13 C 1.38938 * 120.04188 * 214.81768 * 12 11 9 14 14 C 1.38120 * 120.03579 * 179.74436 * 13 12 11 15 15 C 1.38208 * 120.13033 * 0.51614 * 14 13 12 16 16 C 1.38768 * 120.08064 * 359.76488 * 15 14 13 17 17 O 1.35899 * 120.01868 * 179.97438 * 16 15 14 18 18 C 1.42897 * 117.00060 * 0.02562 * 17 16 15 19 19 C 1.53008 * 109.47065 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46953 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99829 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00077 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99698 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00349 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46945 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47436 * 119.99996 * 24 22 20 27 27 H 1.48499 * 109.47448 * 240.00070 * 24 22 20 28 28 C 1.38631 * 119.96197 * 359.97438 * 16 15 14 29 29 H 1.09005 * 109.47123 * 300.00312 * 1 2 3 30 30 H 1.09000 * 109.46952 * 59.99801 * 1 2 3 31 31 H 1.08997 * 109.47218 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46952 * 120.00199 * 2 1 3 33 33 H 1.09003 * 109.46764 * 240.00078 * 2 1 3 34 34 H 1.08996 * 109.46751 * 300.00497 * 3 2 1 35 35 H 1.09009 * 109.46605 * 59.99570 * 3 2 1 36 36 H 1.08996 * 117.50260 * 214.98425 * 6 4 3 37 37 H 1.09006 * 117.49435 * 0.02562 * 6 4 3 38 38 H 0.96991 * 120.00262 * 355.38520 * 11 9 7 39 39 H 1.08001 * 119.97795 * 0.02562 * 13 12 11 40 40 H 1.07997 * 119.93416 * 180.25247 * 14 13 12 41 41 H 1.07994 * 119.96378 * 179.74069 * 15 14 13 42 42 H 1.09001 * 109.47314 * 299.99499 * 18 17 16 43 43 H 1.08997 * 109.47463 * 59.99860 * 18 17 16 44 44 H 1.08992 * 109.47049 * 300.00045 * 19 18 17 45 45 H 1.09003 * 109.46943 * 60.00170 * 19 18 17 46 46 H 0.97003 * 119.99414 * 179.97438 * 23 22 20 47 47 H 1.07995 * 120.05996 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0400 0.5851 0.4826 6 6 4.2770 2.0452 -1.2150 7 6 4.2766 2.7944 0.1190 8 1 5.2114 2.8264 0.6786 9 6 3.4121 4.0241 0.2262 10 8 2.2038 3.9188 0.2164 11 7 3.9817 5.2410 0.3327 12 6 3.1826 6.3896 0.3347 13 6 3.6432 7.5584 -0.2588 14 6 2.8522 8.6906 -0.2614 15 6 1.6057 8.6675 0.3353 16 6 1.1431 7.5046 0.9347 17 8 -0.0825 7.4835 1.5215 18 6 -0.8410 8.6939 1.4835 19 6 -2.1820 8.4779 2.1880 20 6 -2.9816 9.7547 2.1485 21 1 -2.5742 10.6323 1.6686 22 6 -4.2330 9.8025 2.7251 23 7 -4.7292 8.7336 3.3091 24 14 -5.2239 11.3852 2.6768 25 1 -4.4475 12.4338 1.9675 26 1 -6.5032 11.1467 1.9614 27 1 -5.5085 11.8336 4.0636 28 6 1.9318 6.3646 0.9347 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 5.2122 1.5843 -1.5332 37 1 3.6521 2.4421 -2.0151 38 1 4.9454 5.3205 0.4079 39 1 4.6184 7.5801 -0.7224 40 1 3.2101 9.5970 -0.7268 41 1 0.9912 9.5556 0.3353 42 1 -0.2879 9.4853 1.9893 43 1 -1.0177 8.9797 0.4466 44 1 -2.7349 7.6867 1.6819 45 1 -2.0057 8.1920 3.2250 46 1 -5.6096 8.7673 3.7150 47 1 1.5731 5.4586 1.4003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079640857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:53 Heat of formation + Delta-G solvation = -43.063724 kcal Electronic energy + Delta-G solvation = -25520.429017 eV Core-core repulsion = 21861.641913 eV Total energy + Delta-G solvation = -3658.787103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86708 -39.51248 -37.86302 -36.65136 -34.57631 -34.01383 -33.32506 -30.85211 -29.73279 -29.04585 -27.50902 -25.23789 -24.66878 -22.76342 -22.14766 -21.90355 -21.07878 -20.49624 -20.00798 -18.21786 -17.34006 -16.41817 -16.03954 -15.75772 -15.53822 -15.36499 -15.23305 -15.02667 -14.60278 -14.54647 -14.23568 -13.46959 -13.32985 -13.12837 -12.97678 -12.70198 -12.45258 -12.32713 -12.30657 -11.79159 -11.66510 -11.48523 -11.35649 -11.23961 -11.00612 -10.92613 -10.77583 -10.53144 -10.45718 -10.33994 -10.11834 -9.80219 -9.63942 -9.56683 -9.25283 -8.43231 -8.23762 -7.79607 -6.07680 -4.12236 1.37087 1.65844 2.34062 2.79107 3.28256 3.35141 3.38834 3.46352 3.85788 3.99816 4.20953 4.41266 4.46854 4.51049 4.72010 4.94978 5.02166 5.03932 5.09532 5.21051 5.28640 5.28680 5.35170 5.39132 5.49123 5.56279 5.70663 5.71496 5.74809 5.78216 5.88538 5.93892 6.06357 6.07511 6.15163 6.21731 6.31198 6.39688 6.45237 6.55288 6.62686 6.78034 7.01265 7.25872 7.54716 7.68116 7.84513 8.00073 8.10683 8.26902 8.93633 9.51898 11.03981 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002614 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.996349 B =10707.963034 C =12681.283839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.111 4.111 5 H 0.113 0.887 6 C -0.150 4.150 7 C -0.195 4.195 8 H 0.124 0.876 9 C 0.538 3.462 10 O -0.503 6.503 11 N -0.670 5.670 12 C 0.176 3.824 13 C -0.196 4.196 14 C -0.062 4.062 15 C -0.226 4.226 16 C 0.163 3.837 17 O -0.312 6.312 18 C 0.065 3.935 19 C 0.024 3.976 20 C -0.525 4.525 21 H 0.059 0.941 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.283 1.283 28 C -0.163 4.163 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.409 0.591 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.062 -13.206 -8.612 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.122 4.122 4 C -0.129 4.129 5 H 0.131 0.869 6 C -0.188 4.188 7 C -0.216 4.216 8 H 0.142 0.858 9 C 0.325 3.675 10 O -0.376 6.376 11 N -0.314 5.314 12 C 0.082 3.918 13 C -0.217 4.217 14 C -0.081 4.081 15 C -0.245 4.245 16 C 0.115 3.885 17 O -0.225 6.225 18 C -0.009 4.009 19 C -0.013 4.013 20 C -0.563 4.563 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.209 1.209 28 C -0.184 4.184 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.245 0.755 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 21.915 -13.563 -8.431 27.117 hybrid contribution 0.093 1.235 -0.006 1.239 sum 22.008 -12.328 -8.437 26.599 Atomic orbital electron populations 1.21759 0.95721 1.01223 1.02378 1.21568 0.96109 0.97055 1.01330 1.21313 0.90749 0.95867 1.04308 1.22489 0.96442 0.93500 1.00497 0.86937 1.23111 1.03168 1.01907 0.90581 1.22242 1.02097 0.92254 1.04983 0.85779 1.19874 0.88459 0.83451 0.75695 1.90785 1.14264 1.85536 1.47050 1.43420 1.10346 1.04544 1.73139 1.17307 0.91631 0.86031 0.96854 1.20624 1.01791 0.93150 1.06126 1.20652 0.93099 0.97390 0.96968 1.21389 0.98787 0.98689 1.05680 1.18995 0.85806 0.92961 0.90755 1.86193 1.25059 1.39421 1.71816 1.23346 0.93718 0.83223 1.00610 1.19135 0.87708 0.98150 0.96272 1.21009 1.01315 0.96673 1.37330 0.92312 1.24997 0.97573 0.96634 0.95050 1.69998 1.17680 1.28275 1.36775 0.86432 0.79989 0.83146 0.77819 1.19649 1.20839 1.20854 1.20416 0.94333 0.98647 1.04990 0.92433 0.92676 0.93068 0.92400 0.92458 0.91128 0.90018 0.87762 0.88111 0.75505 0.86170 0.85742 0.85080 0.93071 0.93080 0.95344 0.95386 0.92775 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.09 5.89 -26.73 -0.16 -1.25 16 3 C -0.09 -0.89 3.75 -26.73 -0.10 -0.99 16 4 C -0.11 -0.88 5.74 -90.62 -0.52 -1.40 16 5 H 0.11 0.70 8.07 -51.93 -0.42 0.29 16 6 C -0.15 -1.03 9.88 -26.73 -0.26 -1.29 16 7 C -0.19 -1.52 6.19 -91.77 -0.57 -2.08 16 8 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 9 C 0.54 6.22 7.44 -10.98 -0.08 6.14 16 10 O -0.50 -7.83 10.54 5.55 0.06 -7.77 16 11 N -0.67 -6.95 5.34 -9.87 -0.05 -7.00 16 12 C 0.18 2.41 6.30 -83.71 -0.53 1.88 16 13 C -0.20 -2.37 9.96 -39.37 -0.39 -2.76 16 14 C -0.06 -0.81 10.03 -39.64 -0.40 -1.21 16 15 C -0.23 -3.64 9.04 -39.40 -0.36 -4.00 16 16 C 0.16 3.05 6.68 -39.24 -0.26 2.79 16 17 O -0.31 -6.86 10.13 -19.42 -0.20 -7.06 16 18 C 0.07 1.45 4.68 37.16 0.17 1.62 16 19 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 21 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 24 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C -0.16 -2.82 8.63 -39.25 -0.34 -3.16 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 35 H 0.08 1.05 6.92 -51.92 -0.36 0.69 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.81 8.03 -51.93 -0.42 0.40 16 38 H 0.41 2.66 8.82 -40.82 -0.36 2.30 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 42 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 43 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 44 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.14 2.71 6.22 -52.49 -0.33 2.38 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -33.07 386.62 -10.21 -43.28 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.58 Total: 2.29 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -3.98 Total: -19.91 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.68 Total: -33.17 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.14 Total: -14.83 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.07 -10.21 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079640857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.220 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds