Wall clock time and date at job start Tue Mar 31 2020 12:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47716 * 2 1 4 4 C 1.52990 * 109.47523 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55264 * 330.67623 * 4 3 2 6 6 C 1.53005 * 117.49914 * 116.37653 * 4 3 2 7 7 C 1.53002 * 59.99986 * 107.49471 * 6 4 3 8 8 H 1.08998 * 117.50187 * 107.48935 * 7 6 4 9 9 C 1.50704 * 117.49896 * 252.51877 * 7 6 4 10 10 O 1.21285 * 120.00491 * 68.61475 * 9 7 6 11 11 N 1.34780 * 119.99421 * 248.61783 * 9 7 6 12 12 C 1.39925 * 119.99504 * 175.37575 * 11 9 7 13 13 C 1.38938 * 120.04188 * 214.81768 * 12 11 9 14 14 C 1.38120 * 120.03579 * 179.74436 * 13 12 11 15 15 C 1.38208 * 120.13033 * 0.51614 * 14 13 12 16 16 C 1.38768 * 120.08064 * 359.76488 * 15 14 13 17 17 O 1.35899 * 120.01868 * 179.97438 * 16 15 14 18 18 C 1.42897 * 117.00060 * 0.02562 * 17 16 15 19 19 C 1.53008 * 109.47065 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46953 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99829 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00077 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99698 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00349 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46945 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47436 * 119.99996 * 24 22 20 27 27 H 1.48499 * 109.47448 * 240.00070 * 24 22 20 28 28 C 1.38631 * 119.96197 * 359.97438 * 16 15 14 29 29 H 1.09005 * 109.47123 * 300.00312 * 1 2 3 30 30 H 1.09000 * 109.46952 * 59.99801 * 1 2 3 31 31 H 1.08997 * 109.47218 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46952 * 120.00199 * 2 1 3 33 33 H 1.09003 * 109.46764 * 240.00078 * 2 1 3 34 34 H 1.08996 * 109.46751 * 300.00497 * 3 2 1 35 35 H 1.09009 * 109.46605 * 59.99570 * 3 2 1 36 36 H 1.08996 * 117.50260 * 214.98425 * 6 4 3 37 37 H 1.09006 * 117.49435 * 0.02562 * 6 4 3 38 38 H 0.96991 * 120.00262 * 355.38520 * 11 9 7 39 39 H 1.08001 * 119.97795 * 0.02562 * 13 12 11 40 40 H 1.07997 * 119.93416 * 180.25247 * 14 13 12 41 41 H 1.07994 * 119.96378 * 179.74069 * 15 14 13 42 42 H 1.09001 * 109.47314 * 299.99499 * 18 17 16 43 43 H 1.08997 * 109.47463 * 59.99860 * 18 17 16 44 44 H 1.08992 * 109.47049 * 300.00045 * 19 18 17 45 45 H 1.09003 * 109.46943 * 60.00170 * 19 18 17 46 46 H 0.97003 * 119.99414 * 179.97438 * 23 22 20 47 47 H 1.07995 * 120.05996 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0400 0.5851 0.4826 6 6 4.2770 2.0452 -1.2150 7 6 4.2766 2.7944 0.1190 8 1 5.2114 2.8264 0.6786 9 6 3.4121 4.0241 0.2262 10 8 2.2038 3.9188 0.2164 11 7 3.9817 5.2410 0.3327 12 6 3.1826 6.3896 0.3347 13 6 3.6432 7.5584 -0.2588 14 6 2.8522 8.6906 -0.2614 15 6 1.6057 8.6675 0.3353 16 6 1.1431 7.5046 0.9347 17 8 -0.0825 7.4835 1.5215 18 6 -0.8410 8.6939 1.4835 19 6 -2.1820 8.4779 2.1880 20 6 -2.9816 9.7547 2.1485 21 1 -2.5742 10.6323 1.6686 22 6 -4.2330 9.8025 2.7251 23 7 -4.7292 8.7336 3.3091 24 14 -5.2239 11.3852 2.6768 25 1 -4.4475 12.4338 1.9675 26 1 -6.5032 11.1467 1.9614 27 1 -5.5085 11.8336 4.0636 28 6 1.9318 6.3646 0.9347 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 5.2122 1.5843 -1.5332 37 1 3.6521 2.4421 -2.0151 38 1 4.9454 5.3205 0.4079 39 1 4.6184 7.5801 -0.7224 40 1 3.2101 9.5970 -0.7268 41 1 0.9912 9.5556 0.3353 42 1 -0.2879 9.4853 1.9893 43 1 -1.0177 8.9797 0.4466 44 1 -2.7349 7.6867 1.6819 45 1 -2.0057 8.1920 3.2250 46 1 -5.6096 8.7673 3.7150 47 1 1.5731 5.4586 1.4003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079640857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:52 Heat of formation + Delta-G solvation = -62.431385 kcal Electronic energy + Delta-G solvation = -25521.268861 eV Core-core repulsion = 21861.641913 eV Total energy + Delta-G solvation = -3659.626948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.85121 -40.77409 -38.97456 -37.67899 -35.74395 -35.36544 -34.77616 -32.62064 -31.11760 -30.35224 -28.32588 -27.06257 -25.74674 -23.88971 -23.55983 -22.84823 -22.13266 -21.66492 -20.95138 -19.59135 -18.40291 -18.18218 -17.19639 -17.00754 -16.88075 -16.72776 -16.53506 -16.30388 -15.86717 -15.43654 -15.29499 -14.52041 -14.46548 -14.36452 -14.30031 -14.12170 -13.93351 -13.36886 -13.31924 -13.21459 -13.00278 -12.77733 -12.66886 -12.56511 -12.30188 -12.10188 -11.96054 -11.78610 -11.72821 -11.60588 -11.41963 -11.21927 -11.11849 -10.92765 -10.65566 -10.53641 -9.44377 -9.03088 -8.28691 -6.43194 0.22077 0.46758 1.39350 1.41159 1.45208 1.54716 1.89874 2.28717 2.51631 2.74835 2.88221 3.05568 3.52231 3.76142 3.89863 3.90407 4.06100 4.15119 4.19816 4.20450 4.23567 4.24512 4.30752 4.40937 4.43783 4.56538 4.62549 4.68935 4.76350 4.84846 4.90649 4.95303 5.00372 5.06063 5.16662 5.25861 5.26900 5.32326 5.34248 5.39571 5.40687 5.42011 5.50030 5.60421 5.66404 5.90738 6.04415 6.42597 6.54189 6.71885 7.15756 7.27219 8.85085 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002614 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.996349 B =10707.963034 C =12681.283839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.081 4.081 4 C -0.122 4.122 5 H 0.140 0.860 6 C -0.132 4.132 7 C -0.191 4.191 8 H 0.163 0.837 9 C 0.527 3.473 10 O -0.552 6.552 11 N -0.655 5.655 12 C 0.178 3.822 13 C -0.174 4.174 14 C -0.054 4.054 15 C -0.235 4.235 16 C 0.122 3.878 17 O -0.347 6.347 18 C 0.085 3.915 19 C 0.027 3.973 20 C -0.544 4.544 21 H 0.074 0.926 22 C -0.001 4.001 23 N -0.933 5.933 24 Si 0.980 3.020 25 H -0.255 1.255 26 H -0.277 1.277 27 H -0.276 1.276 28 C -0.187 4.187 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.432 0.568 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.065 0.935 43 H 0.061 0.939 44 H -0.007 1.007 45 H -0.004 1.004 46 H 0.267 0.733 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.926 -12.184 -10.364 31.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.119 4.119 4 C -0.140 4.140 5 H 0.157 0.843 6 C -0.169 4.169 7 C -0.212 4.212 8 H 0.180 0.820 9 C 0.317 3.683 10 O -0.429 6.429 11 N -0.302 5.302 12 C 0.083 3.917 13 C -0.195 4.195 14 C -0.072 4.072 15 C -0.255 4.255 16 C 0.076 3.924 17 O -0.261 6.261 18 C 0.011 3.989 19 C -0.010 4.010 20 C -0.582 4.582 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.803 3.197 25 H -0.179 1.179 26 H -0.202 1.202 27 H -0.201 1.201 28 C -0.208 4.208 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.158 0.842 37 H 0.101 0.899 38 H 0.272 0.728 39 H 0.186 0.814 40 H 0.184 0.816 41 H 0.150 0.850 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.012 0.988 45 H 0.015 0.985 46 H 0.076 0.924 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 25.856 -12.544 -10.194 30.493 hybrid contribution -1.011 0.816 0.500 1.392 sum 24.844 -11.729 -9.694 29.134 Atomic orbital electron populations 1.21798 0.96888 1.01804 1.00950 1.21544 0.95103 0.96126 1.02697 1.21148 0.93312 0.96190 1.01225 1.22550 0.94480 0.94670 1.02321 0.84263 1.23192 1.03882 1.00468 0.89337 1.22344 1.02472 0.89871 1.06506 0.81984 1.20731 0.88358 0.84780 0.74450 1.90799 1.16815 1.86261 1.49058 1.43369 1.11200 1.03345 1.72252 1.17464 0.90566 0.87914 0.95774 1.21140 1.03151 0.91462 1.03700 1.21142 0.91442 0.99249 0.95349 1.21527 1.00422 0.97478 1.06053 1.19306 0.85018 0.94939 0.93177 1.86096 1.27226 1.39196 1.73587 1.22893 0.91718 0.83851 1.00451 1.18982 0.90331 0.97116 0.94564 1.21420 1.01947 0.97254 1.37573 0.90830 1.26115 0.98888 1.00735 0.94227 1.70153 1.18361 1.31065 1.37678 0.85175 0.78045 0.78243 0.78209 1.17876 1.20234 1.20121 1.20379 0.96357 0.97308 1.06788 0.94250 0.93796 0.91393 0.91065 0.90767 0.93917 0.93624 0.84181 0.89908 0.72804 0.81395 0.81647 0.85017 0.91693 0.92120 0.98810 0.98526 0.92425 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.91 71.98 0.71 -2.55 16 2 C -0.12 -2.09 5.89 30.59 0.18 -1.91 16 3 C -0.08 -1.82 3.75 30.59 0.11 -1.70 16 4 C -0.12 -1.76 5.74 -10.79 -0.06 -1.82 16 5 H 0.14 1.29 8.07 -2.39 -0.02 1.27 16 6 C -0.13 -1.44 9.88 30.60 0.30 -1.14 16 7 C -0.19 -2.54 6.19 -11.54 -0.07 -2.61 16 8 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 9 C 0.53 12.14 7.44 87.66 0.65 12.79 16 10 O -0.55 -18.72 10.54 -3.05 -0.03 -18.75 16 11 N -0.65 -12.48 5.34 -303.54 -1.62 -14.10 16 12 C 0.18 4.70 6.30 38.14 0.24 4.94 16 13 C -0.17 -3.55 9.96 22.41 0.22 -3.33 16 14 C -0.05 -1.22 10.03 22.23 0.22 -0.99 16 15 C -0.24 -7.49 9.04 22.39 0.20 -7.29 16 16 C 0.12 4.83 6.68 22.49 0.15 4.98 16 17 O -0.35 -16.60 10.13 -92.41 -0.94 -17.54 16 18 C 0.09 4.00 4.68 71.98 0.34 4.34 16 19 C 0.03 1.58 5.34 29.85 0.16 1.74 16 20 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 21 H 0.07 3.98 7.74 -2.91 -0.02 3.96 16 22 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 23 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 24 Si 0.98 44.56 29.54 68.60 2.03 46.58 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 28 C -0.19 -6.90 8.63 22.49 0.19 -6.71 16 29 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.04 1.15 7.30 -2.39 -0.02 1.14 16 35 H 0.05 1.33 6.92 -2.38 -0.02 1.31 16 36 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 1.24 8.03 -2.38 -0.02 1.22 16 38 H 0.43 4.06 8.82 -92.71 -0.82 3.24 16 39 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.13 4.08 6.29 -2.91 -0.02 4.06 16 42 H 0.06 2.82 7.66 -2.39 -0.02 2.80 16 43 H 0.06 2.68 7.66 -2.39 -0.02 2.66 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.11 4.80 6.22 -2.91 -0.02 4.79 16 Total: -1.00 -80.44 386.62 4.12 -76.32 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.14 Total: 18.39 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 4.25 Total: -32.44 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.33 Total: -72.56 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.97 Total: -36.29 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -80.44 4.12 -76.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079640857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.884 kcal (2) G-P(sol) polarization free energy of solvation -80.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds