Wall clock time and date at job start Tue Mar 31 2020 11:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47060 * 2 1 4 4 C 1.52991 * 109.47141 * 120.00408 * 2 1 3 5 5 C 1.53004 * 109.47176 * 64.99937 * 4 2 1 6 6 N 1.46509 * 109.47078 * 179.97438 * 5 4 2 7 7 C 1.46494 * 119.99894 * 269.99978 * 6 5 4 8 8 C 1.50704 * 109.47230 * 275.77969 * 7 6 5 9 9 H 1.08001 * 119.99586 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00171 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00256 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00030 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47335 * 89.99986 * 12 10 8 14 14 H 1.48500 * 109.47074 * 210.00183 * 12 10 8 15 15 H 1.48503 * 109.47195 * 330.00066 * 12 10 8 16 16 C 1.34777 * 119.99744 * 90.00065 * 6 5 4 17 17 O 1.21589 * 119.99952 * 4.96750 * 16 6 5 18 18 C 1.47605 * 119.99690 * 184.96879 * 16 6 5 19 19 C 1.39755 * 120.26433 * 131.79610 * 18 16 6 20 20 C 1.37467 * 120.20338 * 180.15486 * 19 18 16 21 21 C 1.39597 * 120.42957 * 0.02562 * 20 19 18 22 22 C 1.39275 * 119.08746 * 359.59875 * 21 20 19 23 23 C 1.37233 * 120.92277 * 0.59013 * 22 21 20 24 24 C 1.51677 * 106.94208 * 180.57309 * 22 21 20 25 25 C 1.54699 * 101.91130 * 15.73791 * 24 22 21 26 26 O 1.35990 * 129.71186 * 179.55974 * 21 20 19 27 27 H 1.08998 * 109.47369 * 299.99893 * 1 2 3 28 28 H 1.09000 * 109.47478 * 59.99543 * 1 2 3 29 29 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47111 * 240.00471 * 2 1 3 31 31 H 1.09006 * 109.46881 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47675 * 299.99831 * 3 2 1 33 33 H 1.09005 * 109.47269 * 60.00443 * 3 2 1 34 34 H 1.09000 * 109.47536 * 304.99869 * 4 2 1 35 35 H 1.09005 * 109.47318 * 184.99550 * 4 2 1 36 36 H 1.09002 * 109.47197 * 60.00297 * 5 4 2 37 37 H 1.08996 * 109.47153 * 299.99677 * 5 4 2 38 38 H 1.09000 * 109.47681 * 35.78261 * 7 6 5 39 39 H 1.09000 * 109.46980 * 155.78184 * 7 6 5 40 40 H 0.96993 * 120.00423 * 179.97438 * 11 10 8 41 41 H 1.08001 * 119.89887 * 0.13517 * 19 18 16 42 42 H 1.07997 * 119.78809 * 179.97438 * 20 19 18 43 43 H 1.08005 * 120.04381 * 179.61610 * 23 22 21 44 44 H 1.08994 * 110.94855 * 257.56882 * 24 22 21 45 45 H 1.09005 * 110.94200 * 133.89821 * 24 22 21 46 46 H 1.09000 * 110.74518 * 92.89247 * 25 24 22 47 47 H 1.09003 * 110.74283 * 216.04054 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 1.6352 -2.1955 1.1878 6 7 2.1241 -2.8864 2.3837 7 6 3.4523 -3.5044 2.3810 8 6 3.3641 -4.8822 1.7770 9 1 2.4137 -5.2596 1.4295 10 6 4.4966 -5.6610 1.6681 11 7 4.4198 -6.8632 1.1405 12 14 6.1403 -5.0085 2.2698 13 1 6.3263 -5.3757 3.6966 14 1 7.2347 -5.6008 1.4595 15 1 6.1665 -3.5301 2.1318 16 6 1.3518 -2.9534 3.4862 17 8 0.2159 -2.5205 3.4600 18 6 1.8851 -3.5522 4.7255 19 6 1.7410 -2.8887 5.9470 20 6 2.2409 -3.4461 7.0999 21 6 2.8969 -4.6778 7.0630 22 6 3.0302 -5.3376 5.8438 23 6 2.5380 -4.7878 4.6868 24 6 3.7628 -6.6363 6.1219 25 6 3.6266 -6.7571 7.6581 26 8 3.4646 -5.3904 8.0726 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6054 -0.2619 2.1369 35 1 3.1263 -0.6445 1.2950 36 1 2.0698 -2.6550 0.3000 37 1 0.5489 -2.2725 1.1419 38 1 4.1364 -2.8929 1.7927 39 1 3.8203 -3.5791 3.4043 40 1 5.2165 -7.4110 1.0635 41 1 1.2356 -1.9350 5.9853 42 1 2.1262 -2.9274 8.0401 43 1 2.6548 -5.3090 3.7480 44 1 4.8099 -6.5637 5.8280 45 1 3.2764 -7.4731 5.6205 46 1 2.7492 -7.3473 7.9227 47 1 4.5272 -7.1911 8.0926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103440304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:07 Heat of formation + Delta-G solvation = -68.873017 kcal Electronic energy + Delta-G solvation = -27397.429150 eV Core-core repulsion = 23737.522872 eV Total energy + Delta-G solvation = -3659.906278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16566 -40.95621 -38.27443 -37.66511 -36.49820 -34.55498 -33.67596 -31.95767 -30.54351 -30.13719 -29.20199 -28.00374 -25.43538 -24.65809 -24.34139 -23.23968 -22.61020 -20.91444 -20.19144 -19.12647 -18.43247 -18.16748 -17.85635 -17.06787 -16.98786 -16.30976 -16.11811 -16.07174 -15.20030 -14.94418 -14.87490 -14.59077 -14.54919 -14.31324 -14.26807 -14.02194 -13.80411 -13.60034 -13.41420 -13.39496 -13.11691 -12.83657 -12.76414 -12.67903 -12.51843 -12.27701 -12.12937 -11.84981 -11.80284 -11.71154 -11.60878 -11.54529 -11.42947 -10.86563 -10.80405 -9.88049 -9.49758 -9.14310 -8.34161 -6.39513 -0.02972 0.34107 1.33317 1.36718 1.44282 1.71076 2.19992 2.22762 2.28949 2.70751 2.98102 3.47721 3.56502 3.74236 3.92232 3.95299 3.96910 4.06852 4.12561 4.24049 4.28722 4.34939 4.52242 4.54008 4.63827 4.67910 4.71414 4.77133 4.83228 4.84252 4.84886 4.86268 4.93347 5.02828 5.06569 5.11813 5.13134 5.16164 5.31615 5.36378 5.40587 5.41439 5.47216 5.50807 5.55624 5.70134 6.11557 6.14477 6.54515 6.64486 7.15891 7.27651 8.80918 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.005045 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.203551 B = 5549.092696 C = 7235.372989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.116 4.116 5 C 0.115 3.885 6 N -0.588 5.588 7 C 0.214 3.786 8 C -0.535 4.535 9 H 0.036 0.964 10 C 0.038 3.962 11 N -0.929 5.929 12 Si 0.920 3.080 13 H -0.260 1.260 14 H -0.281 1.281 15 H -0.247 1.247 16 C 0.561 3.439 17 O -0.586 6.586 18 C -0.176 4.176 19 C -0.038 4.038 20 C -0.145 4.145 21 C 0.118 3.882 22 C -0.199 4.199 23 C -0.047 4.047 24 C -0.114 4.114 25 C 0.056 3.944 26 O -0.310 6.310 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.270 0.730 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.143 0.857 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 8.308 8.141 11.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.155 4.155 5 C -0.007 4.007 6 N -0.316 5.316 7 C 0.092 3.908 8 C -0.573 4.573 9 H 0.054 0.946 10 C -0.163 4.163 11 N -0.567 5.567 12 Si 0.743 3.257 13 H -0.184 1.184 14 H -0.206 1.206 15 H -0.170 1.170 16 C 0.351 3.649 17 O -0.469 6.469 18 C -0.179 4.179 19 C -0.056 4.056 20 C -0.164 4.164 21 C 0.072 3.928 22 C -0.199 4.199 23 C -0.065 4.065 24 C -0.151 4.151 25 C -0.018 4.018 26 O -0.224 6.224 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.168 0.832 42 H 0.180 0.820 43 H 0.160 0.840 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.187 8.423 8.267 11.804 hybrid contribution 0.710 -0.647 -0.488 1.078 sum 0.523 7.776 7.779 11.012 Atomic orbital electron populations 1.21859 0.95040 1.01406 1.01996 1.21053 0.96119 0.96918 0.97009 1.21783 1.01019 0.94719 1.02233 1.21903 1.00898 0.93786 0.98901 1.21551 0.99715 0.92574 0.86897 1.47910 1.18061 1.53051 1.12567 1.19772 0.80688 0.92384 0.97970 1.21316 0.95332 0.99501 1.41186 0.94592 1.25520 1.02003 0.94488 0.94257 1.70013 1.30954 1.10701 1.45078 0.86117 0.79635 0.80468 0.79516 1.18421 1.20637 1.17030 1.18457 0.84532 0.77913 0.84003 1.90661 1.19004 1.51854 1.85389 1.19762 1.06281 0.97636 0.94233 1.20980 0.95729 0.99469 0.89457 1.20326 1.01573 0.94540 0.99916 1.20047 0.92339 0.93796 0.86648 1.20938 1.05229 1.00328 0.93450 1.21306 0.91781 0.94082 0.99344 1.21878 1.00939 0.94912 0.97416 1.24103 1.05191 0.80356 0.92137 1.86717 1.75574 1.22453 1.37654 0.93150 0.91186 0.93742 0.90785 0.92534 0.91313 0.92809 0.92806 0.91873 0.90792 0.91210 0.94248 0.93887 0.92043 0.83245 0.81989 0.83986 0.89637 0.88682 0.88679 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 71.98 0.64 -2.85 16 2 C -0.09 -2.24 2.92 -10.80 -0.03 -2.27 16 3 C -0.14 -2.79 9.19 71.98 0.66 -2.13 16 4 C -0.12 -3.53 5.01 30.59 0.15 -3.38 16 5 C 0.11 4.29 5.22 86.38 0.45 4.74 16 6 N -0.59 -24.97 2.46 -829.81 -2.04 -27.01 16 7 C 0.21 9.53 3.73 85.64 0.32 9.85 16 8 C -0.54 -28.00 7.40 25.60 0.19 -27.81 16 9 H 0.04 2.17 8.06 -2.91 -0.02 2.15 16 10 C 0.04 2.00 5.47 84.65 0.46 2.47 16 11 N -0.93 -52.88 13.96 21.45 0.30 -52.58 16 12 Si 0.92 39.52 27.47 68.60 1.88 41.40 16 13 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.25 -9.91 6.54 99.48 0.65 -9.25 16 16 C 0.56 24.42 7.24 86.72 0.63 25.05 16 17 O -0.59 -27.36 16.58 -4.00 -0.07 -27.43 16 18 C -0.18 -7.00 4.96 -20.06 -0.10 -7.09 16 19 C -0.04 -1.22 9.69 22.45 0.22 -1.00 16 20 C -0.15 -4.17 10.05 22.42 0.23 -3.94 16 21 C 0.12 3.71 7.05 22.85 0.16 3.87 16 22 C -0.20 -7.05 6.26 -19.54 -0.12 -7.18 16 23 C -0.05 -1.93 7.50 22.41 0.17 -1.76 16 24 C -0.11 -3.33 7.12 30.74 0.22 -3.11 16 25 C 0.06 1.22 8.00 72.56 0.58 1.80 16 26 O -0.31 -8.61 11.09 -93.44 -1.04 -9.64 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.19 6.57 -2.38 -0.02 1.17 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.89 8.14 -2.38 -0.02 1.88 16 36 H 0.07 2.81 8.07 -2.39 -0.02 2.79 16 37 H 0.07 2.71 5.78 -2.39 -0.01 2.70 16 38 H 0.04 1.70 7.17 -2.39 -0.02 1.68 16 39 H 0.04 1.91 4.82 -2.39 -0.01 1.90 16 40 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.14 6.81 4.75 -2.91 -0.01 6.80 16 44 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 46 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -64.66 375.42 4.77 -59.89 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.90 Total: 30.13 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.83 Total: -14.77 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -1.74 Total: -79.59 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.10 Total: -37.07 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.88 Total: 41.40 kcal Total: -64.66 4.77 -59.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.978 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds