Wall clock time and date at job start Tue Mar 31 2020 12:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 C 1.53000 * 109.46858 * 119.99905 * 2 1 3 5 5 H 1.09001 * 109.47344 * 300.00148 * 4 2 1 6 6 C 1.53000 * 109.47299 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.47299 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47201 * 60.00021 * 7 6 4 9 9 C 1.53008 * 109.46822 * 299.99987 * 8 7 6 10 10 H 1.09005 * 109.46714 * 299.99839 * 9 8 7 11 11 N 1.46495 * 109.46889 * 180.02562 * 9 8 7 12 12 S 1.65598 * 120.00276 * 94.99678 * 11 9 8 13 13 O 1.42103 * 104.28061 * 308.93064 * 12 11 9 14 14 O 1.42095 * 104.28020 * 181.07021 * 12 11 9 15 15 C 1.81401 * 104.44820 * 64.99762 * 12 11 9 16 16 C 1.53000 * 109.47337 * 179.97438 * 15 12 11 17 17 C 1.53001 * 109.47355 * 180.02562 * 16 15 12 18 18 C 1.50694 * 109.47168 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.52999 * 109.47193 * 59.99781 * 4 2 1 27 27 H 1.08998 * 109.47364 * 300.00426 * 1 2 3 28 28 H 1.08999 * 109.46549 * 60.00311 * 1 2 3 29 29 H 1.08995 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46928 * 239.99409 * 2 1 3 31 31 H 1.08999 * 109.46894 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46682 * 299.99355 * 3 2 1 33 33 H 1.09001 * 109.46993 * 59.99936 * 3 2 1 34 34 H 1.09005 * 109.46481 * 300.00091 * 6 4 2 35 35 H 1.09001 * 109.46898 * 59.99478 * 6 4 2 36 36 H 1.08999 * 109.46929 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.46863 * 299.99822 * 7 6 4 38 38 H 1.08999 * 109.47179 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.46993 * 59.99758 * 8 7 6 40 40 H 0.97001 * 120.00549 * 274.99878 * 11 9 8 41 41 H 1.09002 * 109.46826 * 60.00375 * 15 12 11 42 42 H 1.08992 * 109.47611 * 300.00359 * 15 12 11 43 43 H 1.09002 * 109.46807 * 60.00423 * 16 15 12 44 44 H 1.08998 * 109.47285 * 300.00025 * 16 15 12 45 45 H 1.09007 * 109.46922 * 59.99890 * 17 16 15 46 46 H 1.09003 * 109.46836 * 300.00646 * 17 16 15 47 47 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.47057 * 60.00314 * 26 4 2 49 49 H 1.08999 * 109.47220 * 299.99867 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5700 -0.7207 1.2497 7 6 4.0799 -1.4425 2.4986 8 6 3.5704 -2.8852 2.4977 9 6 2.0404 -2.8857 2.4973 10 1 1.6767 -2.3724 3.3876 11 7 1.5525 -4.2670 2.4970 12 16 1.1586 -5.0064 3.9255 13 8 2.2954 -4.7992 4.7525 14 8 0.7591 -6.3156 3.5440 15 6 -0.2609 -4.0633 4.5469 16 6 -0.7239 -4.6568 5.8789 17 6 -1.9216 -3.8618 6.4027 18 6 -2.3772 -4.4460 7.7149 19 1 -1.8637 -5.2988 8.1338 20 6 -3.4498 -3.8918 8.3810 21 7 -4.0749 -2.8530 7.8713 22 14 -4.0150 -4.6165 10.0073 23 1 -5.1774 -3.8447 10.5157 24 1 -4.4106 -6.0337 9.8069 25 1 -2.9060 -4.5467 10.9924 26 6 1.5299 -2.1637 1.2493 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 3.9336 -1.2344 0.3597 35 1 3.9330 0.3071 1.2498 36 1 5.1699 -1.4425 2.4987 37 1 3.7162 -0.9293 3.3888 38 1 3.9333 -3.3993 3.3877 39 1 3.9341 -3.3984 1.6075 40 1 1.4602 -4.7487 1.6601 41 1 -1.0754 -4.1143 3.8242 42 1 0.0300 -3.0232 4.6937 43 1 0.0904 -4.6063 6.6018 44 1 -1.0151 -5.6968 5.7316 45 1 -2.7358 -3.9127 5.6796 46 1 -1.6309 -2.8216 6.5498 47 1 -4.8297 -2.4634 8.3397 48 1 1.8933 -2.6776 0.3594 49 1 0.4399 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109343231.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:31 Heat of formation + Delta-G solvation = -127.784128 kcal Electronic energy + Delta-G solvation = -25511.665337 eV Core-core repulsion = 21984.648432 eV Total energy + Delta-G solvation = -3527.016904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.68244 -36.88442 -36.05738 -35.68653 -34.66910 -33.61269 -32.18697 -30.10286 -28.95346 -27.81089 -27.17938 -23.73292 -23.35658 -22.43020 -20.76706 -20.35532 -20.08144 -19.04755 -17.43537 -16.73227 -16.47110 -15.70774 -15.59113 -15.03960 -14.90806 -14.49451 -14.42813 -14.13586 -14.04478 -13.77413 -13.58051 -12.99725 -12.61704 -12.53446 -12.31198 -12.26794 -11.96425 -11.91566 -11.83177 -11.76250 -11.61410 -11.58790 -11.37275 -11.23498 -11.21690 -10.93149 -10.89285 -10.86594 -10.69730 -10.51308 -10.34218 -10.22789 -9.94510 -9.59086 -9.30928 -9.07573 -8.40477 -6.05715 -4.08780 0.49272 2.86155 3.32171 3.35937 3.39248 3.95543 4.28987 4.39624 4.42431 4.44383 4.54151 4.67773 4.76055 4.88516 5.04691 5.08417 5.11672 5.14601 5.24135 5.29411 5.30667 5.32990 5.37865 5.42406 5.43664 5.52343 5.62332 5.68706 5.72505 5.83814 5.87487 5.90452 5.91431 5.97269 5.98196 6.14642 6.18090 6.21169 6.27125 6.30197 6.45179 6.87007 6.95553 7.56566 7.66766 7.92203 8.32837 8.97197 9.55835 11.05455 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.003099 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.546002 B = 9033.260621 C =10241.806899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.083 4.083 5 H 0.075 0.925 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.138 4.138 9 C 0.154 3.846 10 H 0.083 0.917 11 N -1.121 6.121 12 S 2.599 3.401 13 O -0.960 6.960 14 O -0.966 6.966 15 C -0.610 4.610 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.287 1.287 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.123 4.123 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.413 0.587 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.262 0.738 48 H 0.069 0.931 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.270 6.878 -18.606 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.102 4.102 5 H 0.093 0.907 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.177 4.177 9 C 0.046 3.954 10 H 0.101 0.899 11 N -0.877 5.877 12 S 2.695 3.305 13 O -0.950 6.950 14 O -0.956 6.956 15 C -0.742 4.742 16 C -0.145 4.145 17 C -0.007 4.007 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.212 1.212 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.162 4.162 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.247 0.753 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.609 6.331 -18.040 24.061 hybrid contribution -0.963 0.056 0.388 1.039 sum 13.646 6.387 -17.652 23.208 Atomic orbital electron populations 1.21931 0.95153 1.02099 1.01831 1.21121 0.95808 0.96065 0.97860 1.21904 1.01089 0.95995 1.01720 1.21212 0.95419 0.95037 0.98528 0.90651 1.21689 0.94984 1.00548 0.98240 1.21525 1.00479 0.95386 0.98361 1.22088 0.94965 0.97195 1.03448 1.20763 0.94291 0.80826 0.99473 0.89862 1.55815 1.82325 1.23947 1.25605 1.05342 0.76863 0.74806 0.73512 1.93568 1.47296 1.86222 1.67941 1.93573 1.84650 1.35840 1.81539 1.30557 1.18745 1.14458 1.10394 1.21497 1.02039 1.00454 0.90520 1.19052 0.90802 0.95006 0.95833 1.21222 1.14579 1.15039 1.05709 0.92424 1.25018 0.96404 0.94954 0.97963 1.69948 1.21698 1.22593 1.39193 0.86615 0.78195 0.79226 0.83754 1.21241 1.20115 1.20113 1.21969 1.01425 0.95255 0.97502 0.92439 0.92937 0.92224 0.91375 0.92432 0.92963 0.92586 0.92026 0.91586 0.91692 0.91581 0.90152 0.91608 0.75317 0.85316 0.85640 0.91575 0.91604 0.96143 0.96154 0.92848 0.91270 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 2 C -0.09 -0.61 2.51 -90.62 -0.23 -0.83 16 3 C -0.15 -0.95 8.84 37.16 0.33 -0.62 16 4 C -0.08 -0.60 1.78 -90.62 -0.16 -0.77 16 5 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 6 C -0.12 -0.81 4.85 -26.73 -0.13 -0.94 16 7 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 8 C -0.14 -1.33 5.53 -26.73 -0.15 -1.48 16 9 C 0.15 1.49 2.55 -67.96 -0.17 1.31 16 10 H 0.08 0.81 7.15 -51.93 -0.37 0.44 16 11 N -1.12 -11.89 5.36 -4.91 -0.03 -11.92 16 12 S 2.60 38.11 5.38 -107.50 -0.58 37.54 16 13 O -0.96 -16.68 17.11 -57.54 -0.98 -17.67 16 14 O -0.97 -17.10 18.08 -57.54 -1.04 -18.14 16 15 C -0.61 -9.38 5.96 37.16 0.22 -9.15 16 16 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 17 C 0.03 0.80 4.97 -27.89 -0.14 0.66 16 18 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 22 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.12 -0.96 4.38 -26.76 -0.12 -1.07 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.34 6.43 -51.93 -0.33 0.00 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.94 7.42 -51.93 -0.39 0.56 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.41 3.60 8.80 -34.46 -0.30 3.29 16 41 H 0.13 1.78 8.14 -51.92 -0.42 1.35 16 42 H 0.13 1.71 7.44 -51.93 -0.39 1.32 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.59 6.43 -51.93 -0.33 0.25 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -33.96 388.79 -11.07 -45.02 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -9.09 Total: -0.73 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: -0.92 Total: -30.73 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.71 Total: -37.75 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -2.02 Total: -35.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 38.11 SS G_CDS: -0.58 Total: 37.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.96 -11.07 -45.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343231.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.762 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds