Wall clock time and date at job start Tue Mar 31 2020 12:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 C 1.53000 * 109.46858 * 119.99905 * 2 1 3 5 5 H 1.09001 * 109.47344 * 300.00148 * 4 2 1 6 6 C 1.53000 * 109.47299 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.47299 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47201 * 60.00021 * 7 6 4 9 9 C 1.53008 * 109.46822 * 299.99987 * 8 7 6 10 10 H 1.09005 * 109.46714 * 299.99839 * 9 8 7 11 11 N 1.46495 * 109.46889 * 180.02562 * 9 8 7 12 12 S 1.65598 * 120.00276 * 94.99678 * 11 9 8 13 13 O 1.42103 * 104.28061 * 308.93064 * 12 11 9 14 14 O 1.42095 * 104.28020 * 181.07021 * 12 11 9 15 15 C 1.81401 * 104.44820 * 64.99762 * 12 11 9 16 16 C 1.53000 * 109.47337 * 179.97438 * 15 12 11 17 17 C 1.53001 * 109.47355 * 180.02562 * 16 15 12 18 18 C 1.50694 * 109.47168 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.52999 * 109.47193 * 59.99781 * 4 2 1 27 27 H 1.08998 * 109.47364 * 300.00426 * 1 2 3 28 28 H 1.08999 * 109.46549 * 60.00311 * 1 2 3 29 29 H 1.08995 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46928 * 239.99409 * 2 1 3 31 31 H 1.08999 * 109.46894 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46682 * 299.99355 * 3 2 1 33 33 H 1.09001 * 109.46993 * 59.99936 * 3 2 1 34 34 H 1.09005 * 109.46481 * 300.00091 * 6 4 2 35 35 H 1.09001 * 109.46898 * 59.99478 * 6 4 2 36 36 H 1.08999 * 109.46929 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.46863 * 299.99822 * 7 6 4 38 38 H 1.08999 * 109.47179 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.46993 * 59.99758 * 8 7 6 40 40 H 0.97001 * 120.00549 * 274.99878 * 11 9 8 41 41 H 1.09002 * 109.46826 * 60.00375 * 15 12 11 42 42 H 1.08992 * 109.47611 * 300.00359 * 15 12 11 43 43 H 1.09002 * 109.46807 * 60.00423 * 16 15 12 44 44 H 1.08998 * 109.47285 * 300.00025 * 16 15 12 45 45 H 1.09007 * 109.46922 * 59.99890 * 17 16 15 46 46 H 1.09003 * 109.46836 * 300.00646 * 17 16 15 47 47 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.47057 * 60.00314 * 26 4 2 49 49 H 1.08999 * 109.47220 * 299.99867 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5700 -0.7207 1.2497 7 6 4.0799 -1.4425 2.4986 8 6 3.5704 -2.8852 2.4977 9 6 2.0404 -2.8857 2.4973 10 1 1.6767 -2.3724 3.3876 11 7 1.5525 -4.2670 2.4970 12 16 1.1586 -5.0064 3.9255 13 8 2.2954 -4.7992 4.7525 14 8 0.7591 -6.3156 3.5440 15 6 -0.2609 -4.0633 4.5469 16 6 -0.7239 -4.6568 5.8789 17 6 -1.9216 -3.8618 6.4027 18 6 -2.3772 -4.4460 7.7149 19 1 -1.8637 -5.2988 8.1338 20 6 -3.4498 -3.8918 8.3810 21 7 -4.0749 -2.8530 7.8713 22 14 -4.0150 -4.6165 10.0073 23 1 -5.1774 -3.8447 10.5157 24 1 -4.4106 -6.0337 9.8069 25 1 -2.9060 -4.5467 10.9924 26 6 1.5299 -2.1637 1.2493 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 3.9336 -1.2344 0.3597 35 1 3.9330 0.3071 1.2498 36 1 5.1699 -1.4425 2.4987 37 1 3.7162 -0.9293 3.3888 38 1 3.9333 -3.3993 3.3877 39 1 3.9341 -3.3984 1.6075 40 1 1.4602 -4.7487 1.6601 41 1 -1.0754 -4.1143 3.8242 42 1 0.0300 -3.0232 4.6937 43 1 0.0904 -4.6063 6.6018 44 1 -1.0151 -5.6968 5.7316 45 1 -2.7358 -3.9127 5.6796 46 1 -1.6309 -2.8216 6.5498 47 1 -4.8297 -2.4634 8.3397 48 1 1.8933 -2.6776 0.3594 49 1 0.4399 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109343231.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:30 Heat of formation + Delta-G solvation = -149.449930 kcal Electronic energy + Delta-G solvation = -25512.604836 eV Core-core repulsion = 21984.648432 eV Total energy + Delta-G solvation = -3527.956404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33979 -38.17895 -37.07252 -36.72212 -36.47806 -34.34674 -34.17301 -30.74320 -29.69022 -29.63178 -27.74696 -25.63900 -23.98435 -23.12365 -22.47068 -21.07668 -20.80323 -20.11731 -18.67591 -18.48907 -17.56314 -17.13206 -16.64736 -16.46458 -15.97528 -15.64769 -15.40162 -15.09822 -14.67887 -14.49933 -14.42663 -14.24961 -14.08809 -13.68764 -13.54067 -13.26157 -13.19738 -13.12294 -13.03973 -12.97481 -12.74517 -12.67014 -12.63563 -12.26104 -12.22700 -12.15652 -12.02842 -11.85057 -11.75555 -11.52235 -11.41461 -11.29525 -11.21039 -10.93603 -10.85347 -10.57667 -10.23103 -8.23208 -6.34344 -0.73476 1.39693 1.42246 1.50183 1.78037 2.39340 2.74625 3.10187 3.23200 3.64545 3.70776 3.81738 3.87711 3.93659 4.01779 4.17190 4.24242 4.37292 4.42121 4.48463 4.49785 4.60962 4.65195 4.68720 4.77341 4.83224 4.87008 4.89399 4.93949 5.05094 5.08752 5.13904 5.14476 5.26789 5.30394 5.31316 5.33356 5.37452 5.44146 5.49041 5.54885 5.61783 5.62412 5.70682 5.78455 6.15634 6.18995 6.80892 7.34899 8.88036 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.003099 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.546002 B = 9033.260621 C =10241.806899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.082 4.082 5 H 0.067 0.933 6 C -0.112 4.112 7 C -0.119 4.119 8 C -0.138 4.138 9 C 0.145 3.855 10 H 0.081 0.919 11 N -1.103 6.103 12 S 2.627 3.373 13 O -0.987 6.987 14 O -0.994 6.994 15 C -0.611 4.611 16 C -0.106 4.106 17 C 0.032 3.968 18 C -0.555 4.555 19 H 0.060 0.940 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.280 1.280 24 H -0.268 1.268 25 H -0.267 1.267 26 C -0.118 4.118 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.426 0.574 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.265 0.735 48 H 0.082 0.918 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.934 7.028 -19.577 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 C -0.207 4.207 4 C -0.101 4.101 5 H 0.085 0.915 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.178 4.178 9 C 0.038 3.962 10 H 0.099 0.901 11 N -0.864 5.864 12 S 2.723 3.277 13 O -0.976 6.976 14 O -0.985 6.985 15 C -0.742 4.742 16 C -0.145 4.145 17 C -0.006 4.006 18 C -0.593 4.593 19 H 0.078 0.922 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.787 3.213 23 H -0.206 1.206 24 H -0.192 1.192 25 H -0.192 1.192 26 C -0.157 4.157 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.262 0.738 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.273 6.471 -19.015 25.233 hybrid contribution -1.142 0.058 0.636 1.309 sum 14.130 6.529 -18.380 24.085 Atomic orbital electron populations 1.21948 0.95634 1.02011 1.01591 1.21084 0.95345 0.96290 0.97701 1.21901 1.01510 0.95669 1.01596 1.21204 0.95759 0.94603 0.98559 0.91493 1.21655 0.94531 1.00946 0.97799 1.21527 1.00943 0.94376 0.98829 1.22079 0.94776 0.98141 1.02763 1.20993 0.94552 0.80039 1.00577 0.90135 1.55406 1.81695 1.24530 1.24746 1.04276 0.75845 0.73894 0.73726 1.93538 1.48183 1.86482 1.69439 1.93529 1.84947 1.37831 1.82157 1.30520 1.20000 1.15397 1.08234 1.21309 1.00139 0.99980 0.93115 1.18946 0.92201 0.94665 0.94777 1.21718 1.15062 1.15382 1.07117 0.92203 1.25930 0.96484 0.95295 1.01764 1.70063 1.22192 1.23796 1.40815 0.85541 0.77946 0.78674 0.79179 1.20552 1.19247 1.19228 1.21955 1.01558 0.95395 0.96822 0.93333 0.92559 0.92238 0.90670 0.91761 0.92632 0.93207 0.91211 0.90776 0.90973 0.92223 0.92547 0.90579 0.73775 0.83597 0.83937 0.91562 0.91642 0.97905 0.97869 0.92608 0.89974 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.84 71.98 0.64 -1.37 16 2 C -0.09 -0.98 2.51 -10.79 -0.03 -1.01 16 3 C -0.15 -1.63 8.84 71.98 0.64 -0.99 16 4 C -0.08 -1.04 1.78 -10.79 -0.02 -1.06 16 5 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 6 C -0.11 -1.30 4.85 30.59 0.15 -1.16 16 7 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 8 C -0.14 -2.49 5.53 30.60 0.17 -2.32 16 9 C 0.15 2.59 2.55 44.98 0.11 2.71 16 10 H 0.08 1.49 7.15 -2.38 -0.02 1.48 16 11 N -1.10 -21.74 5.36 -169.45 -0.91 -22.65 16 12 S 2.63 75.14 5.38 -56.49 -0.30 74.84 16 13 O -0.99 -33.96 17.11 -127.65 -2.18 -36.14 16 14 O -0.99 -34.50 18.08 -127.65 -2.31 -36.81 16 15 C -0.61 -18.42 5.96 71.98 0.43 -17.99 16 16 C -0.11 -4.36 5.16 30.59 0.16 -4.20 16 17 C 0.03 1.68 4.97 29.85 0.15 1.82 16 18 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 20 C 0.00 0.21 5.46 84.66 0.46 0.67 16 21 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 22 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 C -0.12 -1.60 4.38 30.58 0.13 -1.46 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.76 6.43 -2.39 -0.02 0.75 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.61 6.43 -2.39 -0.02 0.60 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.30 7.42 -2.39 -0.02 1.28 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.43 6.53 8.80 -96.75 -0.85 5.68 16 41 H 0.15 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.14 3.78 7.44 -2.39 -0.02 3.76 16 43 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 46 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 48 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.08 1.04 6.43 -2.39 -0.02 1.03 16 Total: -1.00 -72.54 388.79 0.06 -72.48 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.05 Total: 16.88 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 3.40 Total: -59.43 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -0.62 Total: -78.11 kcal Atomic # 8 Polarization: -68.46 SS G_CDS: -4.49 Total: -72.95 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 75.14 SS G_CDS: -0.30 Total: 74.84 kcal Total: -72.54 0.06 -72.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343231.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.973 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds