Wall clock time and date at job start Tue Mar 31 2020 12:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46814 * 2 1 4 4 C 1.52999 * 109.47187 * 119.99325 * 2 1 3 5 5 H 1.09002 * 109.47442 * 300.00040 * 4 2 1 6 6 C 1.52995 * 109.47043 * 60.00489 * 4 2 1 7 7 C 1.53002 * 109.47247 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47279 * 300.00071 * 7 6 4 9 9 C 1.52995 * 109.47038 * 59.99801 * 8 7 6 10 10 H 1.09004 * 109.47434 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.47404 * 60.00021 * 9 8 7 12 12 S 1.65601 * 119.99942 * 94.99707 * 11 9 8 13 13 O 1.42100 * 104.27822 * 308.93012 * 12 11 9 14 14 O 1.42103 * 104.27772 * 181.07676 * 12 11 9 15 15 C 1.81399 * 104.44938 * 65.00328 * 12 11 9 16 16 C 1.52999 * 109.46810 * 179.97438 * 15 12 11 17 17 C 1.53006 * 109.46997 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47240 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99962 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31522 * 120.00243 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47195 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46997 * 120.00167 * 22 20 18 25 25 H 1.48500 * 109.47074 * 240.00161 * 22 20 18 26 26 C 1.52998 * 109.47129 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.46952 * 60.00479 * 1 2 3 28 28 H 1.09000 * 109.46504 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47240 * 299.99683 * 1 2 3 30 30 H 1.08991 * 109.47560 * 240.00010 * 2 1 3 31 31 H 1.08997 * 109.46850 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46571 * 299.99853 * 3 2 1 33 33 H 1.08999 * 109.47246 * 59.99428 * 3 2 1 34 34 H 1.09004 * 109.47434 * 299.99978 * 6 4 2 35 35 H 1.08996 * 109.47459 * 59.99953 * 6 4 2 36 36 H 1.09004 * 109.47167 * 60.00180 * 7 6 4 37 37 H 1.09002 * 109.47305 * 179.97438 * 7 6 4 38 38 H 1.08999 * 109.47431 * 299.99837 * 8 7 6 39 39 H 1.09001 * 109.46894 * 179.97438 * 8 7 6 40 40 H 0.97000 * 119.99809 * 275.00458 * 11 9 8 41 41 H 1.09000 * 109.47070 * 299.99993 * 15 12 11 42 42 H 1.09001 * 109.46593 * 59.99990 * 15 12 11 43 43 H 1.09000 * 109.47486 * 299.99969 * 16 15 12 44 44 H 1.09001 * 109.47362 * 60.00691 * 16 15 12 45 45 H 1.09000 * 109.46866 * 300.00212 * 17 16 15 46 46 H 1.08996 * 109.47261 * 59.99820 * 17 16 15 47 47 H 0.96992 * 120.00032 * 179.97438 * 21 20 18 48 48 H 1.09008 * 109.47315 * 60.00475 * 26 4 2 49 49 H 1.08999 * 109.47431 * 300.00180 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2072 2.1393 6 6 1.5302 -2.1636 1.2494 7 6 2.0407 -2.8849 2.4984 8 6 3.5707 -2.8848 2.4979 9 6 4.0805 -1.4423 2.4978 10 1 5.1706 -1.4422 2.4978 11 7 3.5926 -0.7518 3.6942 12 16 4.5425 -0.6698 5.0482 13 8 4.9362 -2.0150 5.2821 14 8 3.7477 0.0355 5.9917 15 6 5.9676 0.3316 4.5413 16 6 6.9304 0.4822 5.7208 17 6 8.1321 1.3274 5.2935 18 6 9.0808 1.4752 6.4551 19 1 8.8499 1.0123 7.4032 20 6 10.2439 2.2006 6.3072 21 7 10.5253 2.7639 5.1525 22 14 11.4195 2.3844 7.7472 23 1 10.8762 1.6618 8.9252 24 1 12.7412 1.8136 7.3832 25 1 11.5760 3.8237 8.0778 26 6 3.5700 -0.7205 1.2496 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9565 0.8899 34 1 0.4401 -2.1637 1.2494 35 1 1.8935 -2.6775 0.3595 36 1 1.6776 -2.3712 3.3886 37 1 1.6770 -3.9125 2.4987 38 1 3.9338 -3.3986 1.6077 39 1 3.9343 -3.3983 3.3879 40 1 2.7131 -0.3427 3.6932 41 1 6.4802 -0.1587 3.7137 42 1 5.6251 1.3166 4.2242 43 1 6.4175 0.9727 6.5482 44 1 7.2730 -0.5027 6.0383 45 1 8.6451 0.8373 4.4660 46 1 7.7893 2.3122 4.9763 47 1 11.3434 3.2744 5.0486 48 1 3.9330 0.3073 1.2498 49 1 3.9338 -1.2342 0.3597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109343234.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:35 Heat of formation + Delta-G solvation = -124.402359 kcal Electronic energy + Delta-G solvation = -25707.307269 eV Core-core repulsion = 22180.437010 eV Total energy + Delta-G solvation = -3526.870260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.88224 -36.86783 -35.98057 -35.66769 -34.66749 -33.15510 -32.18532 -30.12561 -29.24817 -27.80950 -27.30333 -23.74056 -23.34724 -22.59121 -20.76841 -20.30633 -20.04994 -18.80345 -17.52363 -16.63143 -16.23151 -15.97529 -15.64281 -15.26466 -14.88545 -14.48541 -14.26959 -14.15957 -13.99907 -13.72258 -13.46549 -12.89365 -12.69928 -12.55744 -12.51492 -12.27921 -12.01571 -11.91976 -11.81348 -11.74950 -11.65717 -11.59525 -11.33238 -11.23953 -11.19817 -10.96210 -10.93783 -10.83378 -10.66313 -10.48734 -10.30143 -10.11195 -9.94979 -9.60115 -9.29520 -9.05876 -8.41383 -6.06161 -4.09041 0.50983 2.89795 3.29158 3.36696 3.41766 3.97346 4.29955 4.34721 4.42244 4.45386 4.50002 4.73894 4.75414 4.89984 5.05204 5.06826 5.11972 5.16844 5.23410 5.27694 5.30520 5.33510 5.38863 5.42478 5.46048 5.48610 5.60038 5.67241 5.72502 5.81064 5.86944 5.89137 5.90622 5.96749 5.99596 6.12437 6.20154 6.21341 6.27118 6.30042 6.45508 6.87228 6.97967 7.56890 7.66704 7.92146 8.32732 8.97497 9.55789 11.05124 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.002870 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.168099 B = 9754.572706 C =10490.375072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.152 4.152 4 C -0.083 4.083 5 H 0.071 0.929 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.138 4.138 9 C 0.154 3.846 10 H 0.085 0.915 11 N -1.117 6.117 12 S 2.599 3.401 13 O -0.961 6.961 14 O -0.966 6.966 15 C -0.610 4.610 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.124 4.124 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.412 0.588 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.076 0.924 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.898 -8.118 -13.287 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.210 4.210 4 C -0.102 4.102 5 H 0.089 0.911 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.177 4.177 9 C 0.047 3.953 10 H 0.103 0.897 11 N -0.876 5.876 12 S 2.694 3.306 13 O -0.950 6.950 14 O -0.957 6.957 15 C -0.742 4.742 16 C -0.145 4.145 17 C -0.008 4.008 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.163 4.163 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.248 0.752 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.815 -8.521 -12.541 24.950 hybrid contribution 0.702 0.789 0.110 1.062 sum -19.113 -7.732 -12.431 24.075 Atomic orbital electron populations 1.21903 0.95438 1.01733 1.01623 1.21137 0.95587 0.96218 0.98011 1.21928 1.01491 0.95848 1.01704 1.21194 0.95058 0.95894 0.98025 0.91082 1.21672 1.00299 0.95091 0.98294 1.21473 0.95642 1.00248 0.98167 1.22056 0.96220 0.96217 1.03257 1.20737 0.98070 0.91805 0.84692 0.89705 1.55838 1.30799 1.70659 1.30266 1.05346 0.76154 0.75751 0.73328 1.93566 1.83970 1.33843 1.83665 1.93573 1.67158 1.75751 1.59182 1.30559 1.17745 1.15135 1.10732 1.21493 0.97277 1.02548 0.93194 1.19063 0.90357 0.94367 0.96982 1.21296 1.04794 1.32488 0.97775 0.92325 1.25023 0.98011 0.95480 0.95900 1.69967 1.25418 1.34439 1.23629 0.86502 0.80813 0.77857 0.82663 1.19597 1.20939 1.20938 1.21958 0.95694 1.01405 0.97204 0.92978 0.92454 0.92721 0.91290 0.92119 0.92958 0.92605 0.91839 0.91996 0.91835 0.92112 0.91136 0.90127 0.75249 0.85628 0.85347 0.91637 0.91596 0.96148 0.96143 0.92962 0.90588 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.84 37.16 0.33 -0.59 16 2 C -0.09 -0.59 2.51 -90.61 -0.23 -0.82 16 3 C -0.15 -1.05 8.84 37.16 0.33 -0.72 16 4 C -0.08 -0.58 1.59 -90.62 -0.14 -0.73 16 5 H 0.07 0.53 6.51 -51.93 -0.34 0.19 16 6 C -0.12 -0.80 4.85 -26.73 -0.13 -0.93 16 7 C -0.12 -0.98 5.77 -26.73 -0.15 -1.13 16 8 C -0.14 -1.29 5.64 -26.73 -0.15 -1.44 16 9 C 0.15 1.43 2.89 -67.95 -0.20 1.23 16 10 H 0.08 0.76 7.15 -51.93 -0.37 0.39 16 11 N -1.12 -11.74 4.63 -4.91 -0.02 -11.76 16 12 S 2.60 37.72 5.38 -107.50 -0.58 37.14 16 13 O -0.96 -16.51 17.11 -57.54 -0.98 -17.49 16 14 O -0.97 -17.04 18.08 -57.54 -1.04 -18.08 16 15 C -0.61 -9.29 5.96 37.16 0.22 -9.07 16 16 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 17 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 18 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 22 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 C -0.12 -0.93 4.56 -26.76 -0.12 -1.05 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.92 7.42 -51.93 -0.39 0.53 16 40 H 0.41 3.75 6.78 -34.47 -0.23 3.52 16 41 H 0.13 1.68 7.44 -51.92 -0.39 1.29 16 42 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.08 0.57 6.43 -51.92 -0.33 0.23 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -33.99 383.97 -10.95 -44.94 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.90 Total: -0.79 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: -0.93 Total: -30.51 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.71 Total: -37.60 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -2.02 Total: -35.57 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 37.72 SS G_CDS: -0.58 Total: 37.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.99 -10.95 -44.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343234.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.463 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds