Wall clock time and date at job start Tue Mar 31 2020 12:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46814 * 2 1 4 4 C 1.52999 * 109.47187 * 119.99325 * 2 1 3 5 5 H 1.09002 * 109.47442 * 300.00040 * 4 2 1 6 6 C 1.52995 * 109.47043 * 60.00489 * 4 2 1 7 7 C 1.53002 * 109.47247 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47279 * 300.00071 * 7 6 4 9 9 C 1.52995 * 109.47038 * 59.99801 * 8 7 6 10 10 H 1.09004 * 109.47434 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.47404 * 60.00021 * 9 8 7 12 12 S 1.65601 * 119.99942 * 94.99707 * 11 9 8 13 13 O 1.42100 * 104.27822 * 308.93012 * 12 11 9 14 14 O 1.42103 * 104.27772 * 181.07676 * 12 11 9 15 15 C 1.81399 * 104.44938 * 65.00328 * 12 11 9 16 16 C 1.52999 * 109.46810 * 179.97438 * 15 12 11 17 17 C 1.53006 * 109.46997 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47240 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99962 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31522 * 120.00243 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47195 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46997 * 120.00167 * 22 20 18 25 25 H 1.48500 * 109.47074 * 240.00161 * 22 20 18 26 26 C 1.52998 * 109.47129 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.46952 * 60.00479 * 1 2 3 28 28 H 1.09000 * 109.46504 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47240 * 299.99683 * 1 2 3 30 30 H 1.08991 * 109.47560 * 240.00010 * 2 1 3 31 31 H 1.08997 * 109.46850 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46571 * 299.99853 * 3 2 1 33 33 H 1.08999 * 109.47246 * 59.99428 * 3 2 1 34 34 H 1.09004 * 109.47434 * 299.99978 * 6 4 2 35 35 H 1.08996 * 109.47459 * 59.99953 * 6 4 2 36 36 H 1.09004 * 109.47167 * 60.00180 * 7 6 4 37 37 H 1.09002 * 109.47305 * 179.97438 * 7 6 4 38 38 H 1.08999 * 109.47431 * 299.99837 * 8 7 6 39 39 H 1.09001 * 109.46894 * 179.97438 * 8 7 6 40 40 H 0.97000 * 119.99809 * 275.00458 * 11 9 8 41 41 H 1.09000 * 109.47070 * 299.99993 * 15 12 11 42 42 H 1.09001 * 109.46593 * 59.99990 * 15 12 11 43 43 H 1.09000 * 109.47486 * 299.99969 * 16 15 12 44 44 H 1.09001 * 109.47362 * 60.00691 * 16 15 12 45 45 H 1.09000 * 109.46866 * 300.00212 * 17 16 15 46 46 H 1.08996 * 109.47261 * 59.99820 * 17 16 15 47 47 H 0.96992 * 120.00032 * 179.97438 * 21 20 18 48 48 H 1.09008 * 109.47315 * 60.00475 * 26 4 2 49 49 H 1.08999 * 109.47431 * 300.00180 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2072 2.1393 6 6 1.5302 -2.1636 1.2494 7 6 2.0407 -2.8849 2.4984 8 6 3.5707 -2.8848 2.4979 9 6 4.0805 -1.4423 2.4978 10 1 5.1706 -1.4422 2.4978 11 7 3.5926 -0.7518 3.6942 12 16 4.5425 -0.6698 5.0482 13 8 4.9362 -2.0150 5.2821 14 8 3.7477 0.0355 5.9917 15 6 5.9676 0.3316 4.5413 16 6 6.9304 0.4822 5.7208 17 6 8.1321 1.3274 5.2935 18 6 9.0808 1.4752 6.4551 19 1 8.8499 1.0123 7.4032 20 6 10.2439 2.2006 6.3072 21 7 10.5253 2.7639 5.1525 22 14 11.4195 2.3844 7.7472 23 1 10.8762 1.6618 8.9252 24 1 12.7412 1.8136 7.3832 25 1 11.5760 3.8237 8.0778 26 6 3.5700 -0.7205 1.2496 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9565 0.8899 34 1 0.4401 -2.1637 1.2494 35 1 1.8935 -2.6775 0.3595 36 1 1.6776 -2.3712 3.3886 37 1 1.6770 -3.9125 2.4987 38 1 3.9338 -3.3986 1.6077 39 1 3.9343 -3.3983 3.3879 40 1 2.7131 -0.3427 3.6932 41 1 6.4802 -0.1587 3.7137 42 1 5.6251 1.3166 4.2242 43 1 6.4175 0.9727 6.5482 44 1 7.2730 -0.5027 6.0383 45 1 8.6451 0.8373 4.4660 46 1 7.7893 2.3122 4.9763 47 1 11.3434 3.2744 5.0486 48 1 3.9330 0.3073 1.2498 49 1 3.9338 -1.2342 0.3597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109343234.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:34 Heat of formation + Delta-G solvation = -145.865754 kcal Electronic energy + Delta-G solvation = -25708.237992 eV Core-core repulsion = 22180.437010 eV Total energy + Delta-G solvation = -3527.800983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52853 -38.15653 -37.03466 -36.59581 -36.47056 -34.17260 -33.88933 -30.76421 -29.92565 -29.65804 -27.83556 -25.63516 -23.95056 -23.24687 -22.46239 -21.02557 -20.84315 -19.79492 -18.66834 -18.53963 -17.30167 -17.13910 -16.55476 -16.49150 -16.36064 -15.63973 -15.50504 -14.76607 -14.72101 -14.50997 -14.30534 -14.17557 -14.06472 -13.68555 -13.53608 -13.25832 -13.18456 -13.10546 -13.03637 -12.98282 -12.77796 -12.62455 -12.60001 -12.43710 -12.25880 -12.13604 -11.95939 -11.82975 -11.75686 -11.54172 -11.38751 -11.23114 -11.19746 -10.86509 -10.72486 -10.58444 -10.21906 -8.23406 -6.34241 -0.70718 1.39093 1.39875 1.53100 1.82558 2.39338 2.77475 3.10158 3.25723 3.68298 3.75858 3.78277 3.87641 3.92313 4.10945 4.18407 4.28938 4.38072 4.45506 4.48349 4.52177 4.64979 4.66958 4.71423 4.79527 4.84611 4.88889 4.89651 4.95835 5.05605 5.09279 5.13211 5.15584 5.23516 5.31514 5.34671 5.35656 5.38592 5.44984 5.50640 5.55955 5.62517 5.65048 5.71396 5.79032 6.15787 6.19393 6.81476 7.35157 8.88263 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.002870 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.168099 B = 9754.572706 C =10490.375072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.154 4.154 4 C -0.083 4.083 5 H 0.066 0.934 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.140 4.140 9 C 0.145 3.855 10 H 0.089 0.911 11 N -1.101 6.101 12 S 2.627 3.373 13 O -0.986 6.986 14 O -0.997 6.997 15 C -0.610 4.610 16 C -0.107 4.107 17 C 0.032 3.968 18 C -0.552 4.552 19 H 0.059 0.941 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.120 4.120 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.422 0.578 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.004 0.996 46 H 0.003 0.997 47 H 0.265 0.735 48 H 0.078 0.922 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.487 -8.496 -14.096 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.211 4.211 4 C -0.101 4.101 5 H 0.084 0.916 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.179 4.179 9 C 0.038 3.962 10 H 0.107 0.893 11 N -0.863 5.863 12 S 2.722 3.278 13 O -0.976 6.976 14 O -0.987 6.987 15 C -0.741 4.741 16 C -0.146 4.146 17 C -0.006 4.006 18 C -0.590 4.590 19 H 0.077 0.923 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.787 3.213 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.159 4.159 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.259 0.741 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.022 0.978 46 H 0.021 0.979 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.412 -8.897 -13.346 25.960 hybrid contribution 0.848 0.886 0.294 1.261 sum -19.563 -8.011 -13.051 24.844 Atomic orbital electron populations 1.21898 0.95174 1.02030 1.01552 1.21095 0.95766 0.95834 0.97824 1.21942 1.01419 0.96168 1.01584 1.21192 0.94753 0.96050 0.98149 0.91596 1.21629 1.00645 0.94751 0.97745 1.21483 0.94954 1.00669 0.98530 1.22062 0.96942 0.95997 1.02898 1.21012 0.98557 0.91993 0.84649 0.89252 1.55457 1.30494 1.70607 1.29753 1.04301 0.75563 0.74592 0.73391 1.93536 1.84474 1.35126 1.84464 1.93526 1.67826 1.76244 1.61127 1.30514 1.17382 1.16823 1.09354 1.21307 0.96591 1.01483 0.95188 1.18955 0.91813 0.94153 0.95715 1.21768 1.05846 1.32682 0.98702 0.92285 1.25925 0.99829 0.95050 0.98718 1.70073 1.26173 1.35068 1.25607 0.85437 0.78488 0.78098 0.79288 1.18867 1.20150 1.20195 1.21960 0.95969 1.01424 0.96552 0.92717 0.91972 0.93165 0.90769 0.92229 0.92712 0.93141 0.91235 0.91143 0.92912 0.91701 0.89438 0.92562 0.74091 0.83638 0.83667 0.91811 0.91581 0.97755 0.97903 0.92616 0.90367 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.84 71.98 0.64 -0.92 16 2 C -0.09 -0.94 2.51 -10.79 -0.03 -0.97 16 3 C -0.15 -1.87 8.84 71.99 0.64 -1.23 16 4 C -0.08 -0.99 1.59 -10.80 -0.02 -1.00 16 5 H 0.07 0.86 6.51 -2.39 -0.02 0.85 16 6 C -0.11 -1.27 4.85 30.59 0.15 -1.13 16 7 C -0.12 -1.80 5.77 30.59 0.18 -1.62 16 8 C -0.14 -2.40 5.64 30.59 0.17 -2.23 16 9 C 0.14 2.43 2.89 44.97 0.13 2.56 16 10 H 0.09 1.44 7.15 -2.39 -0.02 1.42 16 11 N -1.10 -21.81 4.63 -169.44 -0.78 -22.60 16 12 S 2.63 74.66 5.38 -56.49 -0.30 74.36 16 13 O -0.99 -33.59 17.11 -127.65 -2.18 -35.78 16 14 O -1.00 -34.78 18.08 -127.65 -2.31 -37.09 16 15 C -0.61 -18.11 5.96 71.98 0.43 -17.68 16 16 C -0.11 -4.35 5.16 30.60 0.16 -4.19 16 17 C 0.03 1.64 4.97 29.85 0.15 1.79 16 18 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.00 0.17 5.46 84.65 0.46 0.63 16 21 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 22 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 C -0.12 -1.52 4.56 30.58 0.14 -1.38 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.73 6.43 -2.39 -0.02 0.71 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.74 6.43 -2.39 -0.02 0.73 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.90 7.45 -2.38 -0.02 0.88 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.25 7.42 -2.39 -0.02 1.24 16 40 H 0.42 7.12 6.78 -96.74 -0.66 6.47 16 41 H 0.15 3.71 7.44 -2.39 -0.02 3.69 16 42 H 0.15 3.81 8.14 -2.39 -0.02 3.79 16 43 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.08 0.99 6.43 -2.38 -0.02 0.97 16 49 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -72.59 383.97 0.41 -72.18 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.25 Total: 16.59 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 3.43 Total: -58.65 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -0.50 Total: -77.93 kcal Atomic # 8 Polarization: -68.37 SS G_CDS: -4.49 Total: -72.87 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 74.66 SS G_CDS: -0.30 Total: 74.36 kcal Total: -72.59 0.41 -72.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343234.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.688 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds