Wall clock time and date at job start Tue Mar 31 2020 12:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 7 7 C 1.52996 * 109.47131 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47518 * 59.99828 * 7 6 4 9 9 C 1.53005 * 109.46632 * 300.00318 * 8 7 6 10 10 H 1.08996 * 109.46524 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.47137 * 299.99587 * 9 8 7 12 12 S 1.65603 * 120.00111 * 265.00474 * 11 9 8 13 13 O 1.42090 * 104.27795 * 181.07214 * 12 11 9 14 14 O 1.42097 * 104.27576 * 308.92875 * 12 11 9 15 15 C 1.81398 * 104.44858 * 64.99732 * 12 11 9 16 16 C 1.53002 * 109.47085 * 180.02562 * 15 12 11 17 17 C 1.52999 * 109.47236 * 180.02562 * 16 15 12 18 18 C 1.50703 * 109.47264 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99562 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00232 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99651 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47082 * 89.99901 * 22 20 18 24 24 H 1.48496 * 109.46789 * 209.99917 * 22 20 18 25 25 H 1.48494 * 109.47111 * 329.99747 * 22 20 18 26 26 C 1.52996 * 109.47245 * 59.99973 * 9 8 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47289 * 299.99953 * 6 4 2 35 35 H 1.09004 * 109.47261 * 59.99697 * 6 4 2 36 36 H 1.09000 * 109.47054 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.46997 * 299.99574 * 7 6 4 38 38 H 1.09001 * 109.46741 * 60.00149 * 8 7 6 39 39 H 1.08992 * 109.47399 * 180.02562 * 8 7 6 40 40 H 0.96996 * 119.99748 * 85.00448 * 11 9 8 41 41 H 1.08999 * 109.47477 * 300.00142 * 15 12 11 42 42 H 1.09005 * 109.47171 * 60.00232 * 15 12 11 43 43 H 1.08999 * 109.47009 * 300.00343 * 16 15 12 44 44 H 1.08996 * 109.46929 * 60.00196 * 16 15 12 45 45 H 1.08999 * 109.47260 * 300.00016 * 17 16 15 46 46 H 1.09005 * 109.47237 * 60.00013 * 17 16 15 47 47 H 0.96999 * 119.99347 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.46870 * 179.97438 * 26 9 8 49 49 H 1.09001 * 109.47372 * 59.99967 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 3.5700 -0.7219 1.2489 7 6 4.0800 -1.4438 2.4978 8 6 3.5694 -2.8861 2.4975 9 6 2.0394 -2.8854 2.4978 10 1 1.6757 -3.9129 2.4971 11 7 1.5516 -2.1950 3.6943 12 16 1.1577 -3.0631 5.0484 13 8 0.7099 -2.0832 5.9749 14 8 0.2820 -4.0760 4.5729 15 6 2.7290 -3.7856 5.5958 16 6 2.4944 -4.6221 6.8553 17 6 3.8198 -5.2310 7.3173 18 6 3.5888 -6.0543 8.5582 19 1 2.5959 -6.1355 8.9753 20 6 4.6450 -6.7040 9.1611 21 7 5.8540 -6.6054 8.6528 22 14 4.3585 -7.7251 10.6988 23 1 4.0420 -9.1236 10.3125 24 1 5.5828 -7.7087 11.5390 25 1 3.2231 -7.1548 11.4673 26 6 1.5295 -2.1636 1.2489 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 -1.2360 0.3589 35 1 3.9337 0.3056 1.2487 36 1 5.1700 -1.4446 2.4973 37 1 3.7171 -0.9301 3.3880 38 1 3.9324 -3.3998 1.6072 39 1 3.9324 -3.4002 3.3874 40 1 1.4593 -1.2295 3.6933 41 1 3.1307 -4.4218 4.8072 42 1 3.4386 -2.9880 5.8159 43 1 2.0925 -3.9862 7.6441 44 1 1.7850 -5.4197 6.6348 45 1 4.2221 -5.8668 6.5287 46 1 4.5289 -4.4331 7.5380 47 1 6.5970 -7.0628 9.0767 48 1 0.4394 -2.1636 1.2489 49 1 1.8924 -2.6773 0.3586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109343236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:39 Heat of formation + Delta-G solvation = -124.097422 kcal Electronic energy + Delta-G solvation = -25774.988656 eV Core-core repulsion = 22248.131619 eV Total energy + Delta-G solvation = -3526.857037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.89772 -36.87360 -36.01556 -35.70707 -34.67114 -33.11747 -32.19129 -30.16293 -29.28522 -27.78113 -27.32439 -23.81300 -23.28340 -22.59747 -20.76167 -20.31885 -20.03732 -18.82885 -17.54835 -16.63690 -16.22612 -16.00349 -15.65776 -15.23156 -14.95754 -14.48805 -14.21455 -14.13893 -14.10488 -13.73262 -13.47885 -12.91671 -12.68355 -12.54156 -12.53172 -12.27539 -12.03400 -11.91323 -11.83881 -11.76724 -11.66772 -11.55741 -11.38764 -11.27575 -11.19898 -10.98788 -10.91282 -10.82472 -10.67459 -10.47919 -10.29559 -10.12865 -9.94019 -9.59113 -9.30679 -9.06446 -8.40665 -6.05742 -4.08608 0.51268 2.89524 3.30474 3.36570 3.40779 3.97914 4.29087 4.36838 4.39661 4.42667 4.51692 4.71994 4.76089 4.85803 5.04141 5.07124 5.11915 5.17562 5.22291 5.27154 5.30790 5.32634 5.38827 5.41047 5.44803 5.46864 5.57761 5.64707 5.72439 5.79420 5.84720 5.86610 5.89787 5.96709 5.98414 6.08677 6.13951 6.20189 6.27672 6.29413 6.46479 6.87785 6.98317 7.57172 7.67319 7.92479 8.33162 8.97655 9.56094 11.05498 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.002792 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.732211 B =10027.719377 C =10638.281536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.084 4.084 5 H 0.071 0.929 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.148 4.148 9 C 0.148 3.852 10 H 0.093 0.907 11 N -1.116 6.116 12 S 2.599 3.401 13 O -0.966 6.966 14 O -0.964 6.964 15 C -0.610 4.610 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.118 4.118 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.412 0.588 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.074 0.926 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 14.166 -20.349 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.103 4.103 5 H 0.089 0.911 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.187 4.187 9 C 0.041 3.959 10 H 0.111 0.889 11 N -0.875 5.875 12 S 2.695 3.305 13 O -0.956 6.956 14 O -0.954 6.954 15 C -0.742 4.742 16 C -0.145 4.145 17 C -0.007 4.007 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.157 4.157 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.247 0.753 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.246 13.856 -19.975 25.099 hybrid contribution 0.746 -0.237 0.727 1.068 sum -5.500 13.619 -19.247 24.211 Atomic orbital electron populations 1.21923 0.95326 1.02037 1.01624 1.21132 0.95680 0.96081 0.98060 1.21902 1.01193 0.96019 1.01594 1.21213 0.95511 0.95554 0.97991 0.91087 1.21663 0.94842 1.00511 0.98299 1.21482 1.00352 0.95496 0.98324 1.22224 0.95303 0.97825 1.03320 1.20818 0.93489 0.96599 0.85028 0.88852 1.55792 1.84139 1.19647 1.27902 1.05304 0.77613 0.74493 0.73130 1.93570 1.80237 1.59122 1.62713 1.93564 1.61827 1.60520 1.79444 1.30655 1.21144 1.12200 1.10165 1.21496 1.03569 0.97678 0.91762 1.19054 0.89827 0.95630 0.96192 1.21260 0.94582 1.29928 1.10634 0.92393 1.25019 0.95132 0.96626 0.97608 1.69959 0.99512 1.43512 1.40474 0.86557 0.77713 0.80595 0.82964 1.20565 1.21180 1.19749 1.21872 1.01394 0.95442 0.96946 0.92990 0.92661 0.92215 0.91284 0.92720 0.92367 0.93006 0.91964 0.91746 0.91786 0.91642 0.90589 0.90818 0.75255 0.85426 0.85287 0.91648 0.91628 0.96149 0.96139 0.92915 0.90735 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.84 37.16 0.33 -0.67 16 2 C -0.09 -0.58 2.50 -90.62 -0.23 -0.81 16 3 C -0.15 -0.91 8.84 37.15 0.33 -0.58 16 4 C -0.08 -0.59 1.59 -90.62 -0.14 -0.73 16 5 H 0.07 0.53 6.51 -51.93 -0.34 0.19 16 6 C -0.12 -0.80 4.85 -26.73 -0.13 -0.93 16 7 C -0.12 -0.96 5.76 -26.73 -0.15 -1.11 16 8 C -0.15 -1.28 5.60 -26.73 -0.15 -1.43 16 9 C 0.15 1.38 3.02 -67.93 -0.20 1.17 16 10 H 0.09 0.92 7.48 -51.93 -0.39 0.53 16 11 N -1.12 -11.83 4.63 -4.89 -0.02 -11.86 16 12 S 2.60 38.14 5.44 -107.50 -0.58 37.55 16 13 O -0.97 -17.11 18.08 -57.54 -1.04 -18.15 16 14 O -0.96 -16.94 17.39 -57.54 -1.00 -17.94 16 15 C -0.61 -9.30 5.22 37.16 0.19 -9.11 16 16 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 17 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 18 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 22 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.12 -0.90 4.56 -26.73 -0.12 -1.02 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.70 5.78 -51.93 -0.30 0.40 16 40 H 0.41 3.77 6.78 -34.47 -0.23 3.54 16 41 H 0.13 1.72 6.77 -51.92 -0.35 1.37 16 42 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 48 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -34.07 381.69 -10.94 -45.02 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.79 Total: -0.71 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: -0.97 Total: -30.45 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.71 Total: -37.69 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -2.04 Total: -36.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 38.14 SS G_CDS: -0.58 Total: 37.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.07 -10.94 -45.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.080 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds