Wall clock time and date at job start Tue Mar 31 2020 12:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 7 7 C 1.52996 * 109.47131 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47518 * 59.99828 * 7 6 4 9 9 C 1.53005 * 109.46632 * 300.00318 * 8 7 6 10 10 H 1.08996 * 109.46524 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.47137 * 299.99587 * 9 8 7 12 12 S 1.65603 * 120.00111 * 265.00474 * 11 9 8 13 13 O 1.42090 * 104.27795 * 181.07214 * 12 11 9 14 14 O 1.42097 * 104.27576 * 308.92875 * 12 11 9 15 15 C 1.81398 * 104.44858 * 64.99732 * 12 11 9 16 16 C 1.53002 * 109.47085 * 180.02562 * 15 12 11 17 17 C 1.52999 * 109.47236 * 180.02562 * 16 15 12 18 18 C 1.50703 * 109.47264 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99562 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00232 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99651 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47082 * 89.99901 * 22 20 18 24 24 H 1.48496 * 109.46789 * 209.99917 * 22 20 18 25 25 H 1.48494 * 109.47111 * 329.99747 * 22 20 18 26 26 C 1.52996 * 109.47245 * 59.99973 * 9 8 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47289 * 299.99953 * 6 4 2 35 35 H 1.09004 * 109.47261 * 59.99697 * 6 4 2 36 36 H 1.09000 * 109.47054 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.46997 * 299.99574 * 7 6 4 38 38 H 1.09001 * 109.46741 * 60.00149 * 8 7 6 39 39 H 1.08992 * 109.47399 * 180.02562 * 8 7 6 40 40 H 0.96996 * 119.99748 * 85.00448 * 11 9 8 41 41 H 1.08999 * 109.47477 * 300.00142 * 15 12 11 42 42 H 1.09005 * 109.47171 * 60.00232 * 15 12 11 43 43 H 1.08999 * 109.47009 * 300.00343 * 16 15 12 44 44 H 1.08996 * 109.46929 * 60.00196 * 16 15 12 45 45 H 1.08999 * 109.47260 * 300.00016 * 17 16 15 46 46 H 1.09005 * 109.47237 * 60.00013 * 17 16 15 47 47 H 0.96999 * 119.99347 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.46870 * 179.97438 * 26 9 8 49 49 H 1.09001 * 109.47372 * 59.99967 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 3.5700 -0.7219 1.2489 7 6 4.0800 -1.4438 2.4978 8 6 3.5694 -2.8861 2.4975 9 6 2.0394 -2.8854 2.4978 10 1 1.6757 -3.9129 2.4971 11 7 1.5516 -2.1950 3.6943 12 16 1.1577 -3.0631 5.0484 13 8 0.7099 -2.0832 5.9749 14 8 0.2820 -4.0760 4.5729 15 6 2.7290 -3.7856 5.5958 16 6 2.4944 -4.6221 6.8553 17 6 3.8198 -5.2310 7.3173 18 6 3.5888 -6.0543 8.5582 19 1 2.5959 -6.1355 8.9753 20 6 4.6450 -6.7040 9.1611 21 7 5.8540 -6.6054 8.6528 22 14 4.3585 -7.7251 10.6988 23 1 4.0420 -9.1236 10.3125 24 1 5.5828 -7.7087 11.5390 25 1 3.2231 -7.1548 11.4673 26 6 1.5295 -2.1636 1.2489 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 -1.2360 0.3589 35 1 3.9337 0.3056 1.2487 36 1 5.1700 -1.4446 2.4973 37 1 3.7171 -0.9301 3.3880 38 1 3.9324 -3.3998 1.6072 39 1 3.9324 -3.4002 3.3874 40 1 1.4593 -1.2295 3.6933 41 1 3.1307 -4.4218 4.8072 42 1 3.4386 -2.9880 5.8159 43 1 2.0925 -3.9862 7.6441 44 1 1.7850 -5.4197 6.6348 45 1 4.2221 -5.8668 6.5287 46 1 4.5289 -4.4331 7.5380 47 1 6.5970 -7.0628 9.0767 48 1 0.4394 -2.1636 1.2489 49 1 1.8924 -2.6773 0.3586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109343236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:38 Heat of formation + Delta-G solvation = -145.668857 kcal Electronic energy + Delta-G solvation = -25775.924064 eV Core-core repulsion = 22248.131619 eV Total energy + Delta-G solvation = -3527.792444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.54340 -38.18470 -37.05904 -36.66745 -36.45892 -34.18423 -33.84173 -30.81275 -30.02811 -29.55732 -27.84506 -25.64459 -23.95705 -23.25208 -22.43298 -20.99361 -20.89145 -19.81558 -18.70224 -18.53796 -17.32908 -17.17145 -16.59410 -16.47397 -16.29661 -15.77544 -15.45247 -14.77162 -14.76348 -14.48025 -14.31159 -14.18498 -14.07980 -13.66746 -13.48733 -13.32200 -13.20328 -13.13009 -13.04454 -12.98656 -12.76374 -12.64206 -12.62196 -12.42678 -12.27927 -12.13583 -11.98101 -11.85141 -11.72219 -11.54152 -11.38582 -11.25570 -11.16181 -10.88319 -10.72917 -10.57711 -10.22946 -8.23076 -6.33880 -0.71667 1.39800 1.40446 1.51846 1.80908 2.39447 2.76103 3.10488 3.23389 3.67336 3.76275 3.78431 3.86008 3.91855 4.11297 4.17949 4.25657 4.37220 4.44839 4.49237 4.53772 4.63685 4.66781 4.72708 4.78475 4.83177 4.86259 4.88572 4.96135 5.05844 5.08237 5.13136 5.15675 5.23251 5.30437 5.31841 5.35243 5.38736 5.45130 5.49614 5.54285 5.63082 5.64478 5.71160 5.79294 6.15358 6.19670 6.81653 7.35374 8.88392 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.002792 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.732211 B =10027.719377 C =10638.281536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.083 4.083 5 H 0.065 0.935 6 C -0.111 4.111 7 C -0.121 4.121 8 C -0.149 4.149 9 C 0.141 3.859 10 H 0.089 0.911 11 N -1.100 6.100 12 S 2.627 3.373 13 O -0.996 6.996 14 O -0.991 6.991 15 C -0.609 4.609 16 C -0.106 4.106 17 C 0.033 3.967 18 C -0.552 4.552 19 H 0.059 0.941 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.266 1.266 26 C -0.115 4.115 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.422 0.578 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.004 0.996 46 H 0.002 0.998 47 H 0.265 0.735 48 H 0.071 0.929 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.704 14.549 -21.306 26.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 C -0.206 4.206 4 C -0.101 4.101 5 H 0.084 0.916 6 C -0.148 4.148 7 C -0.159 4.159 8 C -0.188 4.188 9 C 0.034 3.966 10 H 0.107 0.893 11 N -0.862 5.862 12 S 2.722 3.278 13 O -0.986 6.986 14 O -0.981 6.981 15 C -0.740 4.740 16 C -0.145 4.145 17 C -0.005 4.005 18 C -0.590 4.590 19 H 0.077 0.923 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.787 3.213 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.190 1.190 26 C -0.154 4.154 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.260 0.740 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.022 0.978 46 H 0.021 0.979 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.415 14.245 -20.929 26.117 hybrid contribution 0.820 -0.324 0.948 1.295 sum -5.595 13.921 -19.981 24.987 Atomic orbital electron populations 1.21931 0.95568 1.01920 1.01584 1.21099 0.95427 0.96233 0.97832 1.21894 1.01410 0.95764 1.01571 1.21200 0.95661 0.95094 0.98169 0.91625 1.21626 0.94550 1.00731 0.97910 1.21507 1.00463 0.95133 0.98791 1.22242 0.94598 0.98378 1.03572 1.21041 0.94103 0.96522 0.84892 0.89295 1.55414 1.83900 1.19974 1.26954 1.04244 0.76721 0.73698 0.73124 1.93525 1.80796 1.59861 1.64404 1.93529 1.62753 1.61766 1.80004 1.30621 1.22514 1.12439 1.08419 1.21309 1.00800 0.98309 0.94084 1.18944 0.91918 0.94694 0.94994 1.21742 0.94827 1.30574 1.11893 0.92267 1.25924 0.94850 0.97819 1.00930 1.70069 1.00364 1.44460 1.42029 0.85488 0.77905 0.79011 0.78937 1.19671 1.20518 1.18983 1.21875 1.01215 0.95818 0.96458 0.92520 0.93251 0.92371 0.90748 0.93166 0.92005 0.92648 0.91243 0.91253 0.91686 0.92150 0.89153 0.91827 0.74043 0.83655 0.83673 0.91781 0.91598 0.97776 0.97917 0.92630 0.91073 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.84 71.98 0.64 -1.14 16 2 C -0.09 -0.94 2.50 -10.79 -0.03 -0.97 16 3 C -0.15 -1.54 8.84 71.98 0.64 -0.90 16 4 C -0.08 -0.99 1.59 -10.79 -0.02 -1.01 16 5 H 0.07 0.87 6.51 -2.39 -0.02 0.85 16 6 C -0.11 -1.28 4.85 30.59 0.15 -1.13 16 7 C -0.12 -1.74 5.76 30.59 0.18 -1.56 16 8 C -0.15 -2.32 5.60 30.60 0.17 -2.15 16 9 C 0.14 2.40 3.02 44.99 0.14 2.54 16 10 H 0.09 1.63 7.48 -2.39 -0.02 1.61 16 11 N -1.10 -22.00 4.63 -169.39 -0.78 -22.78 16 12 S 2.63 75.45 5.44 -56.49 -0.31 75.14 16 13 O -1.00 -34.80 18.08 -127.65 -2.31 -37.10 16 14 O -0.99 -34.28 17.39 -127.65 -2.22 -36.50 16 15 C -0.61 -18.29 5.22 71.98 0.38 -17.91 16 16 C -0.11 -4.32 5.16 30.59 0.16 -4.17 16 17 C 0.03 1.69 4.97 29.85 0.15 1.84 16 18 C -0.55 -31.53 9.11 25.60 0.23 -31.30 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.00 0.17 5.46 84.65 0.46 0.63 16 21 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 22 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 26 C -0.11 -1.53 4.56 30.59 0.14 -1.39 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.69 6.43 -2.38 -0.02 0.68 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.59 6.43 -2.39 -0.02 0.58 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.75 6.43 -2.38 -0.02 0.74 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.92 7.45 -2.39 -0.02 0.90 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.12 5.78 -2.39 -0.01 1.11 16 40 H 0.42 7.15 6.78 -96.75 -0.66 6.49 16 41 H 0.15 3.82 6.77 -2.39 -0.02 3.80 16 42 H 0.15 3.87 8.14 -2.39 -0.02 3.85 16 43 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 47 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 48 H 0.07 1.02 6.43 -2.39 -0.02 1.01 16 49 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -72.41 381.69 0.33 -72.08 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.26 Total: 16.88 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 3.38 Total: -58.62 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -0.50 Total: -78.20 kcal Atomic # 8 Polarization: -69.08 SS G_CDS: -4.53 Total: -73.61 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 75.45 SS G_CDS: -0.31 Total: 75.14 kcal Total: -72.41 0.33 -72.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.584 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds