Wall clock time and date at job start Tue Mar 31 2020 12:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46762 * 2 1 4 4 C 1.52993 * 109.47093 * 120.00328 * 2 1 3 5 5 H 1.09003 * 109.47339 * 299.99549 * 4 2 1 6 6 C 1.53001 * 109.47215 * 60.00203 * 4 2 1 7 7 C 1.53003 * 109.47088 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46980 * 300.00272 * 7 6 4 9 9 C 1.52999 * 109.47768 * 59.99775 * 8 7 6 10 10 H 1.09009 * 109.46617 * 59.99861 * 9 8 7 11 11 N 1.46499 * 109.47248 * 179.97438 * 9 8 7 12 12 S 1.65600 * 120.00018 * 265.00031 * 11 9 8 13 13 O 1.42101 * 104.27828 * 308.93146 * 12 11 9 14 14 O 1.42105 * 104.27457 * 181.07246 * 12 11 9 15 15 C 1.81395 * 104.44750 * 65.00174 * 12 11 9 16 16 C 1.53006 * 109.47082 * 179.97438 * 15 12 11 17 17 C 1.52993 * 109.47481 * 180.02562 * 16 15 12 18 18 C 1.50696 * 109.47432 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99822 * 359.97438 * 18 17 16 20 20 C 1.37884 * 120.00126 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99707 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99956 * 0.27447 * 20 18 17 23 23 H 1.48503 * 109.47407 * 269.72718 * 22 20 18 24 24 H 1.48505 * 109.47281 * 29.72474 * 22 20 18 25 25 H 1.48501 * 109.47274 * 149.72572 * 22 20 18 26 26 C 1.52999 * 109.46724 * 300.00249 * 9 8 7 27 27 H 1.09001 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46660 * 299.99707 * 1 2 3 29 29 H 1.08997 * 109.47004 * 59.99682 * 1 2 3 30 30 H 1.09001 * 109.46910 * 240.00779 * 2 1 3 31 31 H 1.09003 * 109.46986 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47685 * 300.00488 * 3 2 1 33 33 H 1.09003 * 109.47294 * 60.00681 * 3 2 1 34 34 H 1.08999 * 109.46680 * 299.99835 * 6 4 2 35 35 H 1.08996 * 109.47007 * 59.99890 * 6 4 2 36 36 H 1.08997 * 109.46719 * 59.99771 * 7 6 4 37 37 H 1.08991 * 109.47007 * 180.02562 * 7 6 4 38 38 H 1.08997 * 109.46985 * 299.99336 * 8 7 6 39 39 H 1.09007 * 109.47036 * 180.02562 * 8 7 6 40 40 H 0.96999 * 119.99684 * 85.00208 * 11 9 8 41 41 H 1.09001 * 109.47382 * 60.00378 * 15 12 11 42 42 H 1.09000 * 109.47381 * 299.99707 * 15 12 11 43 43 H 1.08996 * 109.47261 * 59.99744 * 16 15 12 44 44 H 1.09000 * 109.46866 * 300.00136 * 16 15 12 45 45 H 1.08996 * 109.47340 * 59.99477 * 17 16 15 46 46 H 1.09004 * 109.46672 * 300.00239 * 17 16 15 47 47 H 0.97005 * 119.99656 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.46745 * 179.97438 * 26 9 8 49 49 H 1.08996 * 109.47099 * 299.99231 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 2.0406 -2.8853 2.4980 8 6 3.5706 -2.8852 2.4973 9 6 4.0807 -1.4427 2.4974 10 1 3.7176 -0.9290 3.3877 11 7 5.5457 -1.4427 2.4974 12 16 6.3736 -1.3178 3.9261 13 8 5.7994 -0.1864 4.5662 14 8 7.7413 -1.3256 3.5403 15 6 5.9570 -2.8372 4.8250 16 6 6.6706 -2.8410 6.1785 17 6 6.3198 -4.1229 6.9365 18 6 7.0231 -4.1269 8.2692 19 1 7.6572 -3.2982 8.5476 20 6 6.8569 -5.1885 9.1332 21 7 7.4703 -5.1917 10.2966 22 14 5.7662 -6.6254 8.6485 23 1 4.3762 -6.3671 9.1028 24 1 5.7829 -6.7836 7.1720 25 1 6.2722 -7.8679 9.2852 26 6 3.5701 -0.7213 1.2485 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.4401 -2.1638 1.2491 35 1 1.8934 -2.6775 0.3591 36 1 1.6777 -2.3716 3.3881 37 1 1.6777 -3.9130 2.4977 38 1 3.9336 -3.3989 1.6072 39 1 3.9344 -3.3996 3.3869 40 1 6.0306 -1.5159 1.6606 41 1 6.2765 -3.7024 4.2439 42 1 4.8794 -2.8827 4.9819 43 1 6.3517 -1.9760 6.7598 44 1 7.7482 -2.7958 6.0212 45 1 6.6390 -4.9878 6.3550 46 1 5.2421 -4.1686 7.0937 47 1 7.3532 -5.9385 10.9046 48 1 3.9331 0.3065 1.2488 49 1 3.9331 -1.2349 0.3583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109343238.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:43 Heat of formation + Delta-G solvation = -123.319759 kcal Electronic energy + Delta-G solvation = -25553.170737 eV Core-core repulsion = 22026.347422 eV Total energy + Delta-G solvation = -3526.823315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.76431 -36.95300 -36.15913 -35.78153 -34.82644 -33.66380 -32.22483 -30.20924 -29.06579 -28.35415 -27.25716 -23.82262 -23.24043 -22.50567 -20.58099 -20.50331 -20.13115 -19.14737 -17.50942 -16.93943 -16.67805 -15.97976 -15.65773 -15.14662 -14.97157 -14.49577 -14.31621 -14.17294 -14.15372 -13.86330 -13.70416 -13.09375 -12.90075 -12.63928 -12.39041 -12.35033 -12.15818 -11.98421 -11.90141 -11.88140 -11.69091 -11.65984 -11.59306 -11.46118 -11.33739 -11.01639 -10.96188 -10.94965 -10.76151 -10.48795 -10.34255 -10.08434 -9.87769 -9.77038 -9.37018 -9.24471 -8.59197 -6.08808 -4.07993 0.41101 2.78589 3.25865 3.33563 3.35541 3.89286 4.19535 4.29186 4.39798 4.41695 4.44542 4.62280 4.68277 4.78064 4.95375 4.98357 5.00647 5.05498 5.16529 5.21973 5.23042 5.25121 5.29533 5.33402 5.35037 5.44644 5.53919 5.59887 5.65833 5.71820 5.76941 5.80349 5.83771 5.88341 5.89875 6.00859 6.08616 6.11150 6.14492 6.22331 6.27060 6.66688 6.88751 7.12195 7.26334 7.70743 8.47383 8.95793 9.52299 11.04512 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.003070 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.090810 B = 9117.181760 C =10223.065924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.152 4.152 4 C -0.083 4.083 5 H 0.075 0.925 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.147 4.147 9 C 0.147 3.853 10 H 0.093 0.907 11 N -1.120 6.120 12 S 2.601 3.399 13 O -0.960 6.960 14 O -0.963 6.963 15 C -0.618 4.618 16 C -0.097 4.097 17 C -0.004 4.004 18 C -0.527 4.527 19 H 0.075 0.925 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.266 1.266 25 H -0.287 1.287 26 C -0.117 4.117 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.414 0.586 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.020 0.980 46 H 0.015 0.985 47 H 0.264 0.736 48 H 0.074 0.926 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.424 7.782 -24.145 29.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.209 4.209 4 C -0.102 4.102 5 H 0.093 0.907 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.186 4.186 9 C 0.039 3.961 10 H 0.111 0.889 11 N -0.876 5.876 12 S 2.697 3.303 13 O -0.950 6.950 14 O -0.953 6.953 15 C -0.749 4.749 16 C -0.137 4.137 17 C -0.043 4.043 18 C -0.565 4.565 19 H 0.093 0.907 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.190 1.190 25 H -0.213 1.213 26 C -0.156 4.156 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.247 0.753 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.917 8.451 -23.570 28.647 hybrid contribution -0.685 -1.579 -0.448 1.778 sum -14.602 6.873 -24.019 28.937 Atomic orbital electron populations 1.21905 0.95291 1.01834 1.01670 1.21122 0.95685 0.96162 0.97922 1.21925 1.01384 0.95924 1.01709 1.21218 0.94472 0.96007 0.98483 0.90664 1.21682 1.00561 0.95003 0.98197 1.21514 0.94805 1.00930 0.98539 1.22254 0.96309 0.96749 1.03338 1.20859 0.78662 0.95974 1.00562 0.88921 1.55786 1.14985 1.91935 1.24909 1.05249 0.73715 0.77401 0.73975 1.93577 1.78803 1.46832 1.75783 1.93585 1.32778 1.87768 1.81165 1.30721 1.11255 1.20971 1.11939 1.21311 0.99343 1.02884 0.90128 1.19523 0.96689 0.92100 0.95946 1.21137 1.29225 1.06748 0.99363 0.90736 1.25030 0.95513 0.98160 0.94740 1.69914 1.43225 1.31984 1.08759 0.86774 0.81018 0.82243 0.79207 1.20228 1.19044 1.21283 1.21889 0.95378 1.01167 0.97156 0.92368 0.92636 0.92954 0.91317 0.92259 0.92940 0.92553 0.91503 0.91930 0.91490 0.91452 0.90997 0.91004 0.75256 0.85233 0.85414 0.91002 0.90991 0.96198 0.96631 0.92631 0.90698 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.84 37.16 0.33 -0.51 16 2 C -0.09 -0.55 2.50 -90.62 -0.23 -0.77 16 3 C -0.15 -0.96 8.84 37.16 0.33 -0.63 16 4 C -0.08 -0.55 1.78 -90.62 -0.16 -0.72 16 5 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 6 C -0.12 -0.74 4.85 -26.73 -0.13 -0.87 16 7 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 8 C -0.15 -1.20 5.49 -26.73 -0.15 -1.35 16 9 C 0.15 1.33 2.69 -67.93 -0.18 1.14 16 10 H 0.09 0.92 7.48 -51.92 -0.39 0.54 16 11 N -1.12 -11.26 5.36 -4.89 -0.03 -11.29 16 12 S 2.60 36.91 5.44 -107.50 -0.58 36.33 16 13 O -0.96 -16.53 17.39 -57.54 -1.00 -17.53 16 14 O -0.96 -16.62 18.08 -57.54 -1.04 -17.66 16 15 C -0.62 -8.84 5.22 37.16 0.19 -8.65 16 16 C -0.10 -1.89 5.16 -26.73 -0.14 -2.03 16 17 C 0.00 -0.09 4.04 -27.89 -0.11 -0.20 16 18 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 19 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 22 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C -0.12 -0.87 4.38 -26.73 -0.12 -0.99 16 27 H 0.06 0.31 6.43 -51.93 -0.33 -0.03 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.39 6.43 -51.93 -0.33 0.06 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.62 5.78 -51.93 -0.30 0.32 16 40 H 0.41 3.37 8.80 -34.47 -0.30 3.07 16 41 H 0.13 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.13 1.57 6.78 -51.92 -0.35 1.22 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.02 0.45 7.19 -51.93 -0.37 0.08 16 46 H 0.02 0.35 7.58 -51.93 -0.39 -0.05 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -34.79 382.89 -10.68 -45.47 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.95 Total: -0.76 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -0.95 Total: -30.08 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.75 Total: -38.24 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -2.04 Total: -35.19 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 36.91 SS G_CDS: -0.58 Total: 36.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.79 -10.68 -45.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343238.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.847 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds