Wall clock time and date at job start Tue Mar 31 2020 12:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46762 * 2 1 4 4 C 1.52993 * 109.47093 * 120.00328 * 2 1 3 5 5 H 1.09003 * 109.47339 * 299.99549 * 4 2 1 6 6 C 1.53001 * 109.47215 * 60.00203 * 4 2 1 7 7 C 1.53003 * 109.47088 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46980 * 300.00272 * 7 6 4 9 9 C 1.52999 * 109.47768 * 59.99775 * 8 7 6 10 10 H 1.09009 * 109.46617 * 59.99861 * 9 8 7 11 11 N 1.46499 * 109.47248 * 179.97438 * 9 8 7 12 12 S 1.65600 * 120.00018 * 265.00031 * 11 9 8 13 13 O 1.42101 * 104.27828 * 308.93146 * 12 11 9 14 14 O 1.42105 * 104.27457 * 181.07246 * 12 11 9 15 15 C 1.81395 * 104.44750 * 65.00174 * 12 11 9 16 16 C 1.53006 * 109.47082 * 179.97438 * 15 12 11 17 17 C 1.52993 * 109.47481 * 180.02562 * 16 15 12 18 18 C 1.50696 * 109.47432 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99822 * 359.97438 * 18 17 16 20 20 C 1.37884 * 120.00126 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99707 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99956 * 0.27447 * 20 18 17 23 23 H 1.48503 * 109.47407 * 269.72718 * 22 20 18 24 24 H 1.48505 * 109.47281 * 29.72474 * 22 20 18 25 25 H 1.48501 * 109.47274 * 149.72572 * 22 20 18 26 26 C 1.52999 * 109.46724 * 300.00249 * 9 8 7 27 27 H 1.09001 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46660 * 299.99707 * 1 2 3 29 29 H 1.08997 * 109.47004 * 59.99682 * 1 2 3 30 30 H 1.09001 * 109.46910 * 240.00779 * 2 1 3 31 31 H 1.09003 * 109.46986 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47685 * 300.00488 * 3 2 1 33 33 H 1.09003 * 109.47294 * 60.00681 * 3 2 1 34 34 H 1.08999 * 109.46680 * 299.99835 * 6 4 2 35 35 H 1.08996 * 109.47007 * 59.99890 * 6 4 2 36 36 H 1.08997 * 109.46719 * 59.99771 * 7 6 4 37 37 H 1.08991 * 109.47007 * 180.02562 * 7 6 4 38 38 H 1.08997 * 109.46985 * 299.99336 * 8 7 6 39 39 H 1.09007 * 109.47036 * 180.02562 * 8 7 6 40 40 H 0.96999 * 119.99684 * 85.00208 * 11 9 8 41 41 H 1.09001 * 109.47382 * 60.00378 * 15 12 11 42 42 H 1.09000 * 109.47381 * 299.99707 * 15 12 11 43 43 H 1.08996 * 109.47261 * 59.99744 * 16 15 12 44 44 H 1.09000 * 109.46866 * 300.00136 * 16 15 12 45 45 H 1.08996 * 109.47340 * 59.99477 * 17 16 15 46 46 H 1.09004 * 109.46672 * 300.00239 * 17 16 15 47 47 H 0.97005 * 119.99656 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.46745 * 179.97438 * 26 9 8 49 49 H 1.08996 * 109.47099 * 299.99231 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 2.0406 -2.8853 2.4980 8 6 3.5706 -2.8852 2.4973 9 6 4.0807 -1.4427 2.4974 10 1 3.7176 -0.9290 3.3877 11 7 5.5457 -1.4427 2.4974 12 16 6.3736 -1.3178 3.9261 13 8 5.7994 -0.1864 4.5662 14 8 7.7413 -1.3256 3.5403 15 6 5.9570 -2.8372 4.8250 16 6 6.6706 -2.8410 6.1785 17 6 6.3198 -4.1229 6.9365 18 6 7.0231 -4.1269 8.2692 19 1 7.6572 -3.2982 8.5476 20 6 6.8569 -5.1885 9.1332 21 7 7.4703 -5.1917 10.2966 22 14 5.7662 -6.6254 8.6485 23 1 4.3762 -6.3671 9.1028 24 1 5.7829 -6.7836 7.1720 25 1 6.2722 -7.8679 9.2852 26 6 3.5701 -0.7213 1.2485 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.4401 -2.1638 1.2491 35 1 1.8934 -2.6775 0.3591 36 1 1.6777 -2.3716 3.3881 37 1 1.6777 -3.9130 2.4977 38 1 3.9336 -3.3989 1.6072 39 1 3.9344 -3.3996 3.3869 40 1 6.0306 -1.5159 1.6606 41 1 6.2765 -3.7024 4.2439 42 1 4.8794 -2.8827 4.9819 43 1 6.3517 -1.9760 6.7598 44 1 7.7482 -2.7958 6.0212 45 1 6.6390 -4.9878 6.3550 46 1 5.2421 -4.1686 7.0937 47 1 7.3532 -5.9385 10.9046 48 1 3.9331 0.3065 1.2488 49 1 3.9331 -1.2349 0.3583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109343238.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:42 Heat of formation + Delta-G solvation = -146.887983 kcal Electronic energy + Delta-G solvation = -25554.192732 eV Core-core repulsion = 22026.347422 eV Total energy + Delta-G solvation = -3527.845310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.34654 -38.20055 -37.08380 -36.78090 -36.51363 -34.34368 -34.23223 -30.80630 -30.17969 -29.61182 -27.75592 -25.45258 -23.95873 -23.12859 -22.24546 -21.11822 -20.79611 -20.14829 -18.97959 -18.58219 -17.59635 -17.25485 -16.62593 -16.24107 -15.97327 -15.67182 -15.44807 -15.10358 -14.85825 -14.69097 -14.45154 -14.28591 -14.08522 -13.71933 -13.57892 -13.30608 -13.23457 -13.22159 -13.16651 -13.01371 -12.70804 -12.61651 -12.56044 -12.25402 -12.24163 -12.06393 -11.90520 -11.79219 -11.64300 -11.53689 -11.41585 -11.34655 -11.26510 -10.96584 -10.89507 -10.77766 -10.23882 -8.30155 -6.36150 -0.74601 1.36499 1.39365 1.50928 1.77270 2.36215 2.74725 3.04973 3.21395 3.63567 3.67992 3.81007 3.86114 3.93462 4.05039 4.15229 4.22464 4.31958 4.41191 4.47642 4.52219 4.59351 4.63720 4.67592 4.76352 4.77948 4.84308 4.87876 4.89291 4.95545 5.07361 5.13010 5.14892 5.25332 5.28931 5.30500 5.32104 5.34429 5.36718 5.45491 5.48065 5.53874 5.61766 5.62272 5.70286 6.15555 6.24986 6.72092 7.28425 8.86885 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.003070 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.090810 B = 9117.181760 C =10223.065924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.153 4.153 4 C -0.080 4.080 5 H 0.065 0.935 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.148 4.148 9 C 0.140 3.860 10 H 0.081 0.919 11 N -1.102 6.102 12 S 2.620 3.380 13 O -0.994 6.994 14 O -0.996 6.996 15 C -0.611 4.611 16 C -0.103 4.103 17 C -0.004 4.004 18 C -0.544 4.544 19 H 0.029 0.971 20 C 0.000 4.000 21 N -0.953 5.953 22 Si 0.956 3.044 23 H -0.264 1.264 24 H -0.238 1.238 25 H -0.286 1.286 26 C -0.115 4.115 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.426 0.574 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.267 0.733 48 H 0.067 0.933 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.678 6.177 -26.953 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.211 4.211 4 C -0.100 4.100 5 H 0.084 0.916 6 C -0.150 4.150 7 C -0.159 4.159 8 C -0.187 4.187 9 C 0.033 3.967 10 H 0.099 0.901 11 N -0.863 5.863 12 S 2.716 3.284 13 O -0.984 6.984 14 O -0.986 6.986 15 C -0.742 4.742 16 C -0.142 4.142 17 C -0.043 4.043 18 C -0.582 4.582 19 H 0.047 0.953 20 C -0.197 4.197 21 N -0.593 5.593 22 Si 0.778 3.222 23 H -0.189 1.189 24 H -0.161 1.161 25 H -0.212 1.212 26 C -0.154 4.154 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.262 0.738 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.162 6.870 -26.404 31.711 hybrid contribution 0.049 -0.981 0.443 1.078 sum -16.112 5.889 -25.960 31.117 Atomic orbital electron populations 1.21896 0.94908 1.02184 1.01622 1.21095 0.95964 0.95778 0.97723 1.21937 1.01206 0.96295 1.01635 1.21194 0.93832 0.96495 0.98447 0.91621 1.21656 1.00936 0.94391 0.98049 1.21535 0.94201 1.01411 0.98766 1.22274 0.96894 0.95703 1.03852 1.21056 0.77530 0.97121 1.00973 0.90079 1.55363 1.15491 1.91584 1.23846 1.04398 0.72833 0.76817 0.74325 1.93536 1.79207 1.48601 1.77046 1.93537 1.35100 1.88122 1.81853 1.30639 1.12306 1.22124 1.09152 1.21177 0.99567 1.00839 0.92662 1.19495 0.96830 0.94346 0.93583 1.21559 1.28999 1.05508 1.02149 0.95292 1.26131 0.97298 1.01786 0.94457 1.70090 1.45431 1.33377 1.10412 0.85582 0.78786 0.77398 0.80432 1.18879 1.16059 1.21198 1.21885 0.95911 1.00728 0.96839 0.91808 0.93118 0.92612 0.90750 0.92548 0.92442 0.93231 0.90897 0.91182 0.92065 0.90757 0.89716 0.91250 0.73772 0.82488 0.82900 0.91972 0.91971 0.94917 0.95021 0.92439 0.91389 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.84 71.98 0.64 -0.75 16 2 C -0.09 -0.88 2.50 -10.79 -0.03 -0.91 16 3 C -0.15 -1.74 8.84 71.98 0.64 -1.10 16 4 C -0.08 -0.92 1.78 -10.79 -0.02 -0.94 16 5 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 6 C -0.11 -1.12 4.85 30.60 0.15 -0.97 16 7 C -0.12 -1.42 5.92 30.60 0.18 -1.24 16 8 C -0.15 -1.95 5.49 30.59 0.17 -1.78 16 9 C 0.14 2.23 2.69 44.99 0.12 2.35 16 10 H 0.08 1.51 7.48 -2.38 -0.02 1.49 16 11 N -1.10 -19.91 5.36 -169.38 -0.91 -20.82 16 12 S 2.62 71.70 5.44 -56.49 -0.31 71.39 16 13 O -0.99 -34.09 17.39 -127.65 -2.22 -36.31 16 14 O -1.00 -33.86 18.08 -127.65 -2.31 -36.17 16 15 C -0.61 -16.08 5.22 71.98 0.38 -15.70 16 16 C -0.10 -3.96 5.16 30.59 0.16 -3.80 16 17 C 0.00 -0.18 4.04 29.84 0.12 -0.06 16 18 C -0.54 -31.63 9.66 25.60 0.25 -31.38 16 19 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 20 C 0.00 -0.01 5.47 84.66 0.46 0.46 16 21 N -0.95 -60.31 13.96 21.45 0.30 -60.02 16 22 Si 0.96 43.09 27.47 68.60 1.88 44.97 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.24 -9.56 6.53 99.48 0.65 -8.91 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 26 C -0.11 -1.47 4.38 30.60 0.13 -1.33 16 27 H 0.06 0.52 6.43 -2.39 -0.02 0.51 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.66 6.43 -2.39 -0.02 0.65 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.65 6.43 -2.39 -0.02 0.64 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.95 5.78 -2.38 -0.01 0.94 16 40 H 0.43 5.91 8.80 -96.74 -0.85 5.06 16 41 H 0.16 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.15 3.27 6.78 -2.39 -0.02 3.25 16 43 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.03 1.39 7.19 -2.39 -0.02 1.38 16 46 H 0.03 1.33 7.58 -2.39 -0.02 1.31 16 47 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 48 H 0.07 0.98 6.43 -2.39 -0.02 0.96 16 49 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -76.91 382.89 -0.21 -77.12 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.00 Total: 16.98 kcal Atomic # 6 Polarization: -60.50 SS G_CDS: 3.34 Total: -57.16 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -0.61 Total: -80.83 kcal Atomic # 8 Polarization: -67.95 SS G_CDS: -4.53 Total: -72.48 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Atomic # 16 Polarization: 71.70 SS G_CDS: -0.31 Total: 71.39 kcal Total: -76.91 -0.21 -77.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343238.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.764 kcal (2) G-P(sol) polarization free energy of solvation -76.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds