Wall clock time and date at job start Tue Mar 31 2020 11:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47602 * 2 1 4 4 C 1.53000 * 109.46778 * 239.99629 * 2 1 3 5 5 C 1.52998 * 109.46989 * 120.00577 * 2 1 3 6 6 H 1.08999 * 109.46940 * 297.38821 * 5 2 1 7 7 C 1.53002 * 109.46889 * 177.39311 * 5 2 1 8 8 C 1.53003 * 109.47056 * 179.97438 * 7 5 2 9 9 C 1.53003 * 109.46907 * 59.99937 * 8 7 5 10 10 C 1.53002 * 109.47314 * 299.99906 * 9 8 7 11 11 C 1.52996 * 109.47555 * 57.39277 * 5 2 1 12 12 H 1.09002 * 109.46769 * 300.00006 * 11 5 2 13 13 N 1.46492 * 109.47425 * 60.00052 * 11 5 2 14 14 S 1.65603 * 119.99989 * 214.72962 * 13 11 5 15 15 O 1.42100 * 104.27652 * 181.06865 * 14 13 11 16 16 O 1.42105 * 104.27658 * 308.92156 * 14 13 11 17 17 C 1.81392 * 104.45149 * 64.99917 * 14 13 11 18 18 C 1.53009 * 109.47203 * 180.02562 * 17 14 13 19 19 C 1.50697 * 109.46884 * 179.97438 * 18 17 14 20 20 H 1.07988 * 120.00515 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99474 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00148 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00317 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47359 * 89.99749 * 23 21 19 25 25 H 1.48495 * 109.47436 * 210.00173 * 23 21 19 26 26 H 1.48504 * 109.47178 * 329.99992 * 23 21 19 27 27 H 1.09004 * 109.46491 * 300.00339 * 1 2 3 28 28 H 1.08998 * 109.46727 * 59.99653 * 1 2 3 29 29 H 1.08989 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47252 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46953 * 300.00294 * 3 2 1 32 32 H 1.08994 * 109.47052 * 59.99873 * 3 2 1 33 33 H 1.09000 * 109.47363 * 310.64254 * 4 2 1 34 34 H 1.09006 * 109.46734 * 70.63615 * 4 2 1 35 35 H 1.08991 * 109.47486 * 190.63735 * 4 2 1 36 36 H 1.08999 * 109.46929 * 299.99517 * 7 5 2 37 37 H 1.09001 * 109.47285 * 60.00082 * 7 5 2 38 38 H 1.09002 * 109.47254 * 179.97438 * 8 7 5 39 39 H 1.08999 * 109.47161 * 300.00356 * 8 7 5 40 40 H 1.08999 * 109.47265 * 59.99874 * 9 8 7 41 41 H 1.09000 * 109.46929 * 179.97438 * 9 8 7 42 42 H 1.08999 * 109.46929 * 300.00174 * 10 9 8 43 43 H 1.08998 * 109.47524 * 180.02562 * 10 9 8 44 44 H 0.96998 * 119.99996 * 34.99898 * 13 11 5 45 45 H 1.09007 * 109.47204 * 299.99700 * 17 14 13 46 46 H 1.08991 * 109.47444 * 60.00057 * 17 14 13 47 47 H 1.08997 * 109.46634 * 299.99925 * 18 17 14 48 48 H 1.08999 * 109.46803 * 59.99370 * 18 17 14 49 49 H 0.97000 * 120.00579 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7214 1.2492 6 1 1.7154 -0.1813 2.1385 7 6 3.5686 -0.7784 1.2168 8 6 4.0787 -1.4993 2.4663 9 6 3.5158 -2.9216 2.5000 10 6 1.9871 -2.8645 2.5324 11 6 1.4772 -2.1437 1.2823 12 1 0.3882 -2.1030 1.3054 13 7 1.9135 -2.8696 0.0871 14 16 0.9094 -3.9810 -0.6193 15 8 1.6624 -4.4889 -1.7121 16 8 0.5125 -4.8256 0.4524 17 6 -0.4984 -3.0048 -1.2155 18 6 -1.5092 -3.9303 -1.8958 19 6 -2.6790 -3.1193 -2.3905 20 1 -2.6998 -2.0509 -2.2350 21 6 -3.7229 -3.7415 -3.0418 22 7 -4.7437 -3.0338 -3.4740 23 14 -3.6875 -5.5898 -3.3103 24 1 -4.3287 -6.2700 -2.1565 25 1 -4.4259 -5.9236 -4.5546 26 1 -2.2793 -6.0452 -3.4331 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 3.1301 1.4423 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6768 1.9562 0.8899 33 1 1.5300 -1.6795 -1.3492 34 1 1.8397 -0.1097 -2.1290 35 1 3.1132 -0.8886 -1.1596 36 1 3.8932 -1.3185 0.3274 37 1 3.9696 0.2349 1.1932 38 1 5.1677 -1.5403 2.4430 39 1 3.7540 -0.9589 3.3554 40 1 3.8404 -3.4620 1.6108 41 1 3.8795 -3.4352 3.3899 42 1 1.6625 -2.3241 3.4216 43 1 1.5861 -3.8777 2.5568 44 1 2.7921 -2.7020 -0.2884 45 1 -0.9752 -2.5029 -0.3734 46 1 -0.1478 -2.2608 -1.9307 47 1 -1.0327 -4.4324 -2.7377 48 1 -1.8597 -4.6740 -1.1802 49 1 -5.4779 -3.4715 -3.9326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111327792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:45 Heat of formation + Delta-G solvation = -90.991510 kcal Electronic energy + Delta-G solvation = -27589.983108 eV Core-core repulsion = 24064.561652 eV Total energy + Delta-G solvation = -3525.421457 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.52023 -36.73253 -35.92080 -35.52687 -33.98511 -33.74918 -31.52355 -30.23950 -29.17632 -27.39162 -27.05127 -25.90871 -23.01117 -22.45740 -21.35753 -20.18593 -18.83837 -18.61229 -17.69093 -16.96048 -16.00484 -15.79939 -15.56924 -14.98133 -14.87041 -14.33902 -14.27453 -14.13346 -13.79905 -13.61711 -13.38173 -12.81480 -12.79653 -12.57359 -12.47397 -12.08705 -11.91970 -11.83182 -11.77903 -11.69667 -11.61672 -11.42361 -11.34682 -11.27184 -11.17102 -11.04925 -10.82585 -10.67645 -10.42052 -10.40208 -10.26991 -10.08532 -9.92120 -9.66133 -9.38964 -8.89281 -8.65718 -6.16101 -4.17009 0.68079 3.06235 3.26646 3.34127 3.38480 4.12486 4.36263 4.40732 4.46778 4.53476 4.64765 4.85445 4.93792 5.00286 5.12490 5.14756 5.17620 5.21524 5.35712 5.38935 5.41931 5.44610 5.50696 5.57467 5.61591 5.66158 5.74101 5.80118 5.84353 5.91189 5.94456 5.95986 6.04238 6.04744 6.09192 6.13429 6.20813 6.29305 6.31736 6.37306 6.47122 6.50701 6.82684 6.93218 7.12146 7.55186 8.37134 8.85459 9.43916 10.96228 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.004695 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.044142 B = 5962.706247 C = 6869.823195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.157 4.157 5 C -0.079 4.079 6 H 0.082 0.918 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.117 4.117 10 C -0.138 4.138 11 C 0.159 3.841 12 H 0.087 0.913 13 N -1.115 6.115 14 S 2.584 3.416 15 O -0.968 6.968 16 O -0.965 6.965 17 C -0.591 4.591 18 C -0.005 4.005 19 C -0.517 4.517 20 H 0.079 0.921 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.867 3.133 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.414 0.586 45 H 0.128 0.872 46 H 0.131 0.869 47 H 0.031 0.969 48 H 0.027 0.973 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.133 7.337 11.581 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.214 4.214 5 C -0.099 4.099 6 H 0.100 0.900 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.155 4.155 10 C -0.177 4.177 11 C 0.051 3.949 12 H 0.105 0.895 13 N -0.874 5.874 14 S 2.681 3.319 15 O -0.959 6.959 16 O -0.955 6.955 17 C -0.723 4.723 18 C -0.045 4.045 19 C -0.556 4.556 20 H 0.097 0.903 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.694 3.306 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.187 1.187 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.251 0.749 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.050 0.950 48 H 0.045 0.955 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.984 6.343 11.525 21.483 hybrid contribution -0.114 -0.165 -0.436 0.480 sum 16.870 6.178 11.089 21.112 Atomic orbital electron populations 1.22221 0.94154 1.03076 1.02239 1.20494 0.95827 0.94981 0.94797 1.21914 1.00790 0.95452 1.01656 1.22479 1.01024 1.01031 0.96899 1.21434 0.95546 0.94564 0.98365 0.89995 1.21715 0.95013 1.00628 0.98256 1.21560 0.99762 0.96192 0.98177 1.21471 0.95578 0.96575 1.01870 1.22068 0.96166 1.02231 0.97273 1.20791 0.98725 0.91024 0.84318 0.89489 1.56076 1.30600 1.61020 1.39744 1.05782 0.76541 0.75222 0.74376 1.93560 1.69326 1.77856 1.55140 1.93547 1.83845 1.63857 1.54205 1.30582 1.16156 1.14038 1.11568 1.19398 0.94659 0.94601 0.95802 1.20828 1.01423 0.95866 1.37436 0.90322 1.24968 0.95118 0.98177 0.94761 1.69876 1.08798 1.35981 1.38703 0.86955 0.79168 0.86125 0.78384 1.19697 1.20788 1.18663 0.92658 0.91985 0.91516 0.92638 0.92668 0.92887 0.92111 0.92798 0.92277 0.91458 0.91537 0.92332 0.92105 0.91827 0.92266 0.91236 0.90088 0.74903 0.85388 0.85044 0.95034 0.95469 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.03 37.16 0.30 -1.50 16 2 C -0.06 -0.58 0.57 -154.51 -0.09 -0.67 16 3 C -0.14 -1.19 8.16 37.15 0.30 -0.88 16 4 C -0.16 -1.65 6.89 37.16 0.26 -1.40 16 5 C -0.08 -0.69 1.52 -90.62 -0.14 -0.83 16 6 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.12 -0.93 4.34 -26.73 -0.12 -1.04 16 8 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 9 C -0.12 -1.08 5.77 -26.73 -0.15 -1.23 16 10 C -0.14 -1.43 5.63 -26.71 -0.15 -1.58 16 11 C 0.16 1.70 1.90 -67.91 -0.13 1.57 16 12 H 0.09 0.95 5.59 -51.93 -0.29 0.66 16 13 N -1.11 -13.55 2.16 -4.88 -0.01 -13.57 16 14 S 2.58 43.54 4.86 -107.50 -0.52 43.01 16 15 O -0.97 -19.01 18.08 -57.54 -1.04 -20.05 16 16 O -0.96 -18.58 17.08 -57.54 -0.98 -19.56 16 17 C -0.59 -10.62 4.18 37.16 0.16 -10.47 16 18 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 19 C -0.52 -14.16 9.66 -34.44 -0.33 -14.49 16 20 H 0.08 2.25 7.99 -52.49 -0.42 1.84 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 23 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.81 2.83 -51.94 -0.15 0.67 16 30 H 0.05 0.42 6.49 -51.93 -0.34 0.08 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.71 2.64 -51.93 -0.14 0.57 16 34 H 0.05 0.58 8.11 -51.93 -0.42 0.15 16 35 H 0.06 0.53 5.49 -51.93 -0.29 0.25 16 36 H 0.07 0.54 4.76 -51.93 -0.25 0.29 16 37 H 0.07 0.47 6.49 -51.93 -0.34 0.13 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.63 7.45 -51.93 -0.39 0.25 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.01 7.40 -51.93 -0.38 0.63 16 44 H 0.41 4.39 5.41 -34.47 -0.19 4.20 16 45 H 0.13 2.07 5.51 -51.92 -0.29 1.79 16 46 H 0.13 2.18 6.79 -51.93 -0.35 1.82 16 47 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 48 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 49 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -32.87 355.78 -9.51 -42.38 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.96 Total: 3.60 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: -0.46 Total: -31.87 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.76 Total: -39.63 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -2.02 Total: -39.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 43.54 SS G_CDS: -0.52 Total: 43.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.87 -9.51 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.607 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds