Wall clock time and date at job start Tue Mar 31 2020 11:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47602 * 2 1 4 4 C 1.53000 * 109.46778 * 239.99629 * 2 1 3 5 5 C 1.52998 * 109.46989 * 120.00577 * 2 1 3 6 6 H 1.08999 * 109.46940 * 297.38821 * 5 2 1 7 7 C 1.53002 * 109.46889 * 177.39311 * 5 2 1 8 8 C 1.53003 * 109.47056 * 179.97438 * 7 5 2 9 9 C 1.53003 * 109.46907 * 59.99937 * 8 7 5 10 10 C 1.53002 * 109.47314 * 299.99906 * 9 8 7 11 11 C 1.52996 * 109.47555 * 57.39277 * 5 2 1 12 12 H 1.09002 * 109.46769 * 300.00006 * 11 5 2 13 13 N 1.46492 * 109.47425 * 60.00052 * 11 5 2 14 14 S 1.65603 * 119.99989 * 214.72962 * 13 11 5 15 15 O 1.42100 * 104.27652 * 181.06865 * 14 13 11 16 16 O 1.42105 * 104.27658 * 308.92156 * 14 13 11 17 17 C 1.81392 * 104.45149 * 64.99917 * 14 13 11 18 18 C 1.53009 * 109.47203 * 180.02562 * 17 14 13 19 19 C 1.50697 * 109.46884 * 179.97438 * 18 17 14 20 20 H 1.07988 * 120.00515 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99474 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00148 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00317 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47359 * 89.99749 * 23 21 19 25 25 H 1.48495 * 109.47436 * 210.00173 * 23 21 19 26 26 H 1.48504 * 109.47178 * 329.99992 * 23 21 19 27 27 H 1.09004 * 109.46491 * 300.00339 * 1 2 3 28 28 H 1.08998 * 109.46727 * 59.99653 * 1 2 3 29 29 H 1.08989 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47252 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46953 * 300.00294 * 3 2 1 32 32 H 1.08994 * 109.47052 * 59.99873 * 3 2 1 33 33 H 1.09000 * 109.47363 * 310.64254 * 4 2 1 34 34 H 1.09006 * 109.46734 * 70.63615 * 4 2 1 35 35 H 1.08991 * 109.47486 * 190.63735 * 4 2 1 36 36 H 1.08999 * 109.46929 * 299.99517 * 7 5 2 37 37 H 1.09001 * 109.47285 * 60.00082 * 7 5 2 38 38 H 1.09002 * 109.47254 * 179.97438 * 8 7 5 39 39 H 1.08999 * 109.47161 * 300.00356 * 8 7 5 40 40 H 1.08999 * 109.47265 * 59.99874 * 9 8 7 41 41 H 1.09000 * 109.46929 * 179.97438 * 9 8 7 42 42 H 1.08999 * 109.46929 * 300.00174 * 10 9 8 43 43 H 1.08998 * 109.47524 * 180.02562 * 10 9 8 44 44 H 0.96998 * 119.99996 * 34.99898 * 13 11 5 45 45 H 1.09007 * 109.47204 * 299.99700 * 17 14 13 46 46 H 1.08991 * 109.47444 * 60.00057 * 17 14 13 47 47 H 1.08997 * 109.46634 * 299.99925 * 18 17 14 48 48 H 1.08999 * 109.46803 * 59.99370 * 18 17 14 49 49 H 0.97000 * 120.00579 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7214 1.2492 6 1 1.7154 -0.1813 2.1385 7 6 3.5686 -0.7784 1.2168 8 6 4.0787 -1.4993 2.4663 9 6 3.5158 -2.9216 2.5000 10 6 1.9871 -2.8645 2.5324 11 6 1.4772 -2.1437 1.2823 12 1 0.3882 -2.1030 1.3054 13 7 1.9135 -2.8696 0.0871 14 16 0.9094 -3.9810 -0.6193 15 8 1.6624 -4.4889 -1.7121 16 8 0.5125 -4.8256 0.4524 17 6 -0.4984 -3.0048 -1.2155 18 6 -1.5092 -3.9303 -1.8958 19 6 -2.6790 -3.1193 -2.3905 20 1 -2.6998 -2.0509 -2.2350 21 6 -3.7229 -3.7415 -3.0418 22 7 -4.7437 -3.0338 -3.4740 23 14 -3.6875 -5.5898 -3.3103 24 1 -4.3287 -6.2700 -2.1565 25 1 -4.4259 -5.9236 -4.5546 26 1 -2.2793 -6.0452 -3.4331 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 3.1301 1.4423 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6768 1.9562 0.8899 33 1 1.5300 -1.6795 -1.3492 34 1 1.8397 -0.1097 -2.1290 35 1 3.1132 -0.8886 -1.1596 36 1 3.8932 -1.3185 0.3274 37 1 3.9696 0.2349 1.1932 38 1 5.1677 -1.5403 2.4430 39 1 3.7540 -0.9589 3.3554 40 1 3.8404 -3.4620 1.6108 41 1 3.8795 -3.4352 3.3899 42 1 1.6625 -2.3241 3.4216 43 1 1.5861 -3.8777 2.5568 44 1 2.7921 -2.7020 -0.2884 45 1 -0.9752 -2.5029 -0.3734 46 1 -0.1478 -2.2608 -1.9307 47 1 -1.0327 -4.4324 -2.7377 48 1 -1.8597 -4.6740 -1.1802 49 1 -5.4779 -3.4715 -3.9326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111327792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:44 Heat of formation + Delta-G solvation = -112.487780 kcal Electronic energy + Delta-G solvation = -27590.915257 eV Core-core repulsion = 24064.561652 eV Total energy + Delta-G solvation = -3526.353605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31474 -38.19510 -37.05223 -36.69697 -35.87417 -34.67929 -33.49776 -31.01112 -29.97441 -28.38598 -27.89488 -27.57756 -23.77454 -23.25256 -23.15042 -21.13344 -19.91513 -19.57171 -19.32839 -18.54925 -17.13896 -17.09986 -16.63262 -16.38156 -16.15638 -15.62848 -15.32313 -15.08281 -14.93551 -14.79165 -14.50437 -14.19075 -13.80594 -13.71682 -13.43354 -13.27750 -13.22772 -13.11917 -13.06193 -12.95451 -12.83933 -12.69027 -12.57474 -12.31695 -12.20952 -12.04341 -12.00736 -11.78527 -11.71901 -11.61785 -11.43524 -11.28442 -11.10032 -10.91094 -10.83350 -10.66486 -9.91289 -8.35414 -6.40260 -0.71514 1.30987 1.33318 1.42843 1.82135 2.29582 2.73339 2.98595 3.21571 3.63685 3.74777 3.82819 3.90141 3.96983 4.12741 4.19492 4.25871 4.33373 4.40303 4.50887 4.56603 4.67271 4.68340 4.69030 4.79088 4.86774 4.89762 4.97651 4.99413 5.05072 5.07212 5.12081 5.17826 5.18440 5.28330 5.30374 5.34489 5.36582 5.39923 5.47795 5.50593 5.55091 5.60523 5.67594 5.72666 6.17613 6.18751 6.65631 7.23818 8.80007 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.004695 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.044142 B = 5962.706247 C = 6869.823195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.057 4.057 3 C -0.138 4.138 4 C -0.164 4.164 5 C -0.071 4.071 6 H 0.098 0.902 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.139 4.139 11 C 0.149 3.851 12 H 0.083 0.917 13 N -1.095 6.095 14 S 2.611 3.389 15 O -0.995 6.995 16 O -0.987 6.987 17 C -0.594 4.594 18 C -0.014 4.014 19 C -0.520 4.520 20 H 0.052 0.948 21 C 0.016 3.984 22 N -0.939 5.939 23 Si 0.920 3.080 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.252 1.252 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.424 0.576 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.029 0.971 48 H 0.029 0.971 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.273 7.725 13.048 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.057 4.057 3 C -0.195 4.195 4 C -0.221 4.221 5 C -0.090 4.090 6 H 0.116 0.884 7 C -0.156 4.156 8 C -0.151 4.151 9 C -0.157 4.157 10 C -0.178 4.178 11 C 0.043 3.957 12 H 0.101 0.899 13 N -0.859 5.859 14 S 2.706 3.294 15 O -0.986 6.986 16 O -0.977 6.977 17 C -0.725 4.725 18 C -0.053 4.053 19 C -0.559 4.559 20 H 0.070 0.930 21 C -0.182 4.182 22 N -0.579 5.579 23 Si 0.743 3.257 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.176 1.176 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.264 0.736 45 H 0.160 0.840 46 H 0.160 0.840 47 H 0.047 0.953 48 H 0.048 0.952 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.128 6.734 12.987 24.081 hybrid contribution -0.759 -0.181 -0.842 1.148 sum 18.369 6.553 12.145 22.975 Atomic orbital electron populations 1.22260 0.95731 1.02074 1.02084 1.20456 0.94464 0.95986 0.94762 1.21880 1.01612 0.94237 1.01741 1.22547 1.02050 1.00188 0.97330 1.21400 0.96360 0.92813 0.98473 0.88351 1.21737 0.93908 1.01593 0.98322 1.21523 1.00273 0.94876 0.98435 1.21493 0.94607 0.97877 1.01682 1.22062 0.97111 1.00919 0.97679 1.21062 0.98834 0.92241 0.83584 0.89941 1.55643 1.30055 1.60372 1.39854 1.04744 0.75988 0.75063 0.73561 1.93516 1.69695 1.78849 1.56506 1.93520 1.84380 1.65038 1.54763 1.30569 1.16070 1.13713 1.12129 1.19346 0.94608 0.95188 0.96158 1.21121 1.02766 0.95224 1.36834 0.92969 1.25805 0.94892 1.02754 0.94784 1.69999 1.09780 1.37956 1.40147 0.86094 0.79840 0.80824 0.78904 1.18560 1.19957 1.17577 0.91486 0.93533 0.92864 0.91259 0.93481 0.91997 0.93709 0.93406 0.90524 0.91728 0.89965 0.91347 0.91062 0.92894 0.91718 0.89372 0.92641 0.73584 0.83970 0.84048 0.95302 0.95239 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.03 71.98 0.58 -2.99 16 2 C -0.06 -0.97 0.57 -52.18 -0.03 -1.00 16 3 C -0.14 -1.95 8.16 71.98 0.59 -1.37 16 4 C -0.16 -3.21 6.89 71.98 0.50 -2.71 16 5 C -0.07 -1.03 1.52 -10.80 -0.02 -1.05 16 6 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 7 C -0.12 -1.42 4.34 30.60 0.13 -1.29 16 8 C -0.11 -1.33 5.92 30.60 0.18 -1.15 16 9 C -0.12 -1.90 5.77 30.60 0.18 -1.72 16 10 C -0.14 -2.61 5.63 30.61 0.17 -2.44 16 11 C 0.15 2.93 1.90 45.01 0.09 3.01 16 12 H 0.08 1.71 5.59 -2.39 -0.01 1.70 16 13 N -1.10 -25.28 2.16 -169.34 -0.37 -25.64 16 14 S 2.61 86.75 4.86 -56.49 -0.27 86.48 16 15 O -1.00 -38.57 18.08 -127.65 -2.31 -40.88 16 16 O -0.99 -37.64 17.08 -127.65 -2.18 -39.82 16 17 C -0.59 -21.43 4.18 71.99 0.30 -21.12 16 18 C -0.01 -0.66 4.05 29.85 0.12 -0.54 16 19 C -0.52 -29.17 9.66 25.60 0.25 -28.92 16 20 H 0.05 3.11 7.99 -2.92 -0.02 3.09 16 21 C 0.02 0.94 5.47 84.66 0.46 1.40 16 22 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 23 Si 0.92 44.03 27.47 68.60 1.88 45.91 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.28 2.83 -2.39 -0.01 1.27 16 30 H 0.07 0.80 6.49 -2.39 -0.02 0.79 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 1.01 2.64 -2.39 -0.01 1.00 16 34 H 0.05 0.98 8.11 -2.38 -0.02 0.96 16 35 H 0.08 1.21 5.49 -2.39 -0.01 1.19 16 36 H 0.06 0.82 4.76 -2.39 -0.01 0.81 16 37 H 0.08 0.79 6.49 -2.39 -0.02 0.78 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.05 0.95 7.45 -2.39 -0.02 0.93 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 1.34 7.40 -2.39 -0.02 1.32 16 44 H 0.42 8.27 5.41 -96.75 -0.52 7.75 16 45 H 0.14 4.65 5.51 -2.39 -0.01 4.63 16 46 H 0.14 4.75 6.79 -2.40 -0.02 4.73 16 47 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 48 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 49 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -71.18 355.78 0.92 -70.26 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.37 Total: 22.82 kcal Atomic # 6 Polarization: -65.37 SS G_CDS: 3.50 Total: -61.88 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -0.07 Total: -82.89 kcal Atomic # 8 Polarization: -76.21 SS G_CDS: -4.49 Total: -80.70 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 16 Polarization: 86.75 SS G_CDS: -0.27 Total: 86.48 kcal Total: -71.18 0.92 -70.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.227 kcal (2) G-P(sol) polarization free energy of solvation -71.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds