Wall clock time and date at job start Tue Mar 31 2020 11:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46979 * 2 1 4 4 C 1.53004 * 109.47511 * 239.99718 * 2 1 3 5 5 C 1.53008 * 109.47164 * 119.99676 * 2 1 3 6 6 H 1.08996 * 109.47105 * 306.27376 * 5 2 1 7 7 C 1.53005 * 109.46955 * 186.27785 * 5 2 1 8 8 C 1.52993 * 109.46927 * 180.02562 * 7 5 2 9 9 C 1.53004 * 109.47568 * 59.99571 * 8 7 5 10 10 C 1.52995 * 109.46992 * 300.00333 * 9 8 7 11 11 C 1.52998 * 109.47394 * 59.99950 * 10 9 8 12 12 H 1.08998 * 109.47350 * 59.99320 * 11 10 9 13 13 N 1.46502 * 109.47189 * 179.97438 * 11 10 9 14 14 S 1.65597 * 119.99976 * 265.27049 * 13 11 10 15 15 O 1.42094 * 104.27830 * 180.79599 * 14 13 11 16 16 O 1.42097 * 104.27921 * 308.65874 * 14 13 11 17 17 C 1.81402 * 104.44619 * 64.72444 * 14 13 11 18 18 C 1.52998 * 109.47197 * 179.97438 * 17 14 13 19 19 C 1.50696 * 109.47495 * 179.97438 * 18 17 14 20 20 H 1.07996 * 119.99952 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00407 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00308 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99861 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46943 * 89.99542 * 23 21 19 25 25 H 1.48492 * 109.47089 * 209.99883 * 23 21 19 26 26 H 1.48503 * 109.47031 * 329.99929 * 23 21 19 27 27 H 1.09002 * 109.47104 * 288.64492 * 1 2 3 28 28 H 1.08998 * 109.47526 * 48.64796 * 1 2 3 29 29 H 1.09001 * 109.46902 * 168.64597 * 1 2 3 30 30 H 1.09008 * 109.47155 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47188 * 299.99257 * 3 2 1 32 32 H 1.08999 * 109.47561 * 60.00060 * 3 2 1 33 33 H 1.08997 * 109.46741 * 300.00569 * 4 2 1 34 34 H 1.09006 * 109.46729 * 59.99853 * 4 2 1 35 35 H 1.08994 * 109.47502 * 180.02562 * 4 2 1 36 36 H 1.09008 * 109.46870 * 300.00148 * 7 5 2 37 37 H 1.09001 * 109.46845 * 59.99890 * 7 5 2 38 38 H 1.08999 * 109.47449 * 180.02562 * 8 7 5 39 39 H 1.09008 * 109.47164 * 299.99597 * 8 7 5 40 40 H 1.08998 * 109.46477 * 60.00232 * 9 8 7 41 41 H 1.08997 * 109.47177 * 179.97438 * 9 8 7 42 42 H 1.08998 * 109.47427 * 299.99317 * 10 9 8 43 43 H 1.09007 * 109.46916 * 179.97438 * 10 9 8 44 44 H 0.97001 * 119.99467 * 84.99878 * 13 11 10 45 45 H 1.08992 * 109.47414 * 299.99866 * 17 14 13 46 46 H 1.09004 * 109.47023 * 60.00122 * 17 14 13 47 47 H 1.09001 * 109.47426 * 300.00503 * 18 17 14 48 48 H 1.09004 * 109.46676 * 60.00348 * 18 17 14 49 49 H 0.96998 * 119.99515 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.5879 -0.2763 2.1357 7 6 3.5619 -0.5860 1.3307 8 6 4.0719 -1.3077 2.5795 9 6 3.6948 -2.7885 2.5028 10 6 2.1730 -2.9236 2.4214 11 6 1.6629 -2.2020 1.1724 12 1 2.1150 -2.6465 0.2858 13 7 0.2057 -2.3320 1.0943 14 16 -0.4702 -3.5464 0.1940 15 8 -1.8703 -3.3499 0.3355 16 8 0.1608 -3.4352 -1.0744 17 6 0.0465 -5.0710 1.0303 18 6 -0.5226 -6.2797 0.2847 19 6 -0.0930 -7.5463 0.9790 20 1 0.5239 -7.4943 1.8639 21 6 -0.4883 -8.7714 0.4852 22 7 -0.1137 -9.8767 1.0915 23 14 -1.5559 -8.8613 -1.0450 24 1 -0.6899 -8.9338 -2.2492 25 1 -2.4145 -10.0710 -0.9791 26 1 -2.4120 -7.6503 -1.1231 27 1 -0.3633 0.3286 0.9737 28 1 -0.3634 0.6789 -0.7714 29 1 -0.3633 -1.0076 -0.2023 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 4.0140 -1.0309 0.4441 37 1 3.8305 0.4690 1.3850 38 1 5.1560 -1.2110 2.6378 39 1 3.6198 -0.8631 3.4662 40 1 4.1469 -3.2330 1.6162 41 1 4.0586 -3.3027 3.3923 42 1 1.7208 -2.4792 3.3080 43 1 1.9043 -3.9786 2.3663 44 1 -0.3631 -1.7089 1.5731 45 1 1.1348 -5.1291 1.0401 46 1 -0.3265 -5.0678 2.0545 47 1 -1.6110 -6.2214 0.2751 48 1 -0.1500 -6.2831 -0.7397 49 1 -0.3915 -10.7386 0.7438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111327796.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:53 Heat of formation + Delta-G solvation = -102.103175 kcal Electronic energy + Delta-G solvation = -27131.930463 eV Core-core repulsion = 23606.027168 eV Total energy + Delta-G solvation = -3525.903295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29887 -36.69051 -35.92711 -35.54930 -34.39076 -33.95919 -31.50780 -29.99213 -28.79603 -27.35275 -27.21913 -25.94958 -22.99307 -22.39251 -21.26754 -20.22354 -19.12690 -18.65496 -17.59279 -16.82972 -16.41161 -15.84448 -15.34572 -14.92604 -14.75386 -14.33841 -14.23819 -14.17540 -13.83000 -13.61532 -13.28337 -13.17766 -12.81133 -12.71764 -12.06832 -12.04319 -11.94434 -11.84247 -11.82235 -11.71213 -11.60504 -11.44854 -11.41491 -11.26345 -11.22741 -11.12466 -10.85318 -10.68247 -10.45974 -10.39591 -10.27698 -10.17609 -10.04294 -9.69744 -9.39847 -8.92485 -8.66667 -6.17046 -4.18193 0.68121 3.03125 3.26126 3.33563 3.37859 4.10743 4.35487 4.39586 4.45732 4.52912 4.67279 4.84786 4.93461 4.97242 5.11830 5.14467 5.17577 5.21077 5.31341 5.37734 5.42246 5.47193 5.51437 5.56084 5.58142 5.68191 5.72312 5.75297 5.78630 5.87212 5.93288 5.96014 6.01470 6.04509 6.07062 6.11580 6.18693 6.28617 6.29209 6.35585 6.41939 6.57131 6.81251 6.92448 7.09379 7.54423 8.36132 8.84073 9.42820 10.95332 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.004207 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.263246 B = 6654.236509 C = 7544.526789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.060 4.060 3 C -0.143 4.143 4 C -0.160 4.160 5 C -0.075 4.075 6 H 0.075 0.925 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.148 4.148 11 C 0.151 3.849 12 H 0.097 0.903 13 N -1.118 6.118 14 S 2.585 3.415 15 O -0.969 6.969 16 O -0.962 6.962 17 C -0.587 4.587 18 C -0.007 4.007 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.868 3.132 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.415 0.585 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.031 0.969 48 H 0.028 0.972 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.451 21.806 1.972 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.060 4.060 3 C -0.200 4.200 4 C -0.217 4.217 5 C -0.095 4.095 6 H 0.093 0.907 7 C -0.156 4.156 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.187 4.187 11 C 0.044 3.956 12 H 0.115 0.885 13 N -0.875 5.875 14 S 2.683 3.317 15 O -0.959 6.959 16 O -0.952 6.952 17 C -0.720 4.720 18 C -0.046 4.046 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.694 3.306 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.186 1.186 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.250 0.750 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.049 0.951 48 H 0.046 0.954 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.995 21.640 1.071 22.767 hybrid contribution -0.449 -0.271 0.087 0.531 sum 6.546 21.368 1.158 22.379 Atomic orbital electron populations 1.22269 0.94856 1.02640 1.01034 1.20469 0.95563 0.94829 0.95131 1.21964 1.01008 0.95646 1.01355 1.22162 1.00559 1.02594 0.96368 1.21398 0.95915 0.94079 0.98062 0.90682 1.21720 0.94602 1.00721 0.98523 1.21571 1.00447 0.95645 0.98127 1.21507 0.95351 0.96390 1.02473 1.22265 0.96181 1.01681 0.98618 1.20945 0.79214 0.96688 0.98772 0.88545 1.56077 1.14268 1.47639 1.69528 1.05725 0.74148 0.76371 0.75499 1.93562 1.30439 1.85083 1.86804 1.93534 1.77170 1.85652 1.38798 1.30428 1.11564 1.16769 1.13200 1.19402 0.96668 0.92793 0.95715 1.20841 1.33505 0.87974 1.13443 0.90412 1.24979 0.95539 0.95591 0.96949 1.69880 1.45442 0.97737 1.40290 0.86942 0.81368 0.78398 0.83857 1.19645 1.20740 1.18641 0.92947 0.93235 0.91588 0.92385 0.92939 0.92997 0.89870 0.93071 0.92853 0.91302 0.91306 0.92038 0.92075 0.91544 0.91559 0.91123 0.90597 0.75016 0.85609 0.85527 0.95050 0.95405 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 7.04 37.15 0.26 -1.36 16 2 C -0.06 -0.58 0.58 -154.51 -0.09 -0.67 16 3 C -0.14 -1.16 7.92 37.16 0.29 -0.87 16 4 C -0.16 -1.80 7.70 37.16 0.29 -1.52 16 5 C -0.07 -0.67 1.34 -90.61 -0.12 -0.79 16 6 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 7 C -0.12 -0.93 4.45 -26.73 -0.12 -1.04 16 8 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 9 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 10 C -0.15 -1.49 5.48 -26.73 -0.15 -1.64 16 11 C 0.15 1.62 1.60 -67.93 -0.11 1.51 16 12 H 0.10 1.14 5.71 -51.93 -0.30 0.84 16 13 N -1.12 -13.40 2.92 -4.89 -0.01 -13.42 16 14 S 2.59 42.97 4.68 -107.50 -0.50 42.47 16 15 O -0.97 -18.90 18.08 -57.54 -1.04 -19.94 16 16 O -0.96 -17.86 15.49 -57.54 -0.89 -18.75 16 17 C -0.59 -10.61 5.12 37.16 0.19 -10.42 16 18 C -0.01 -0.15 4.05 -27.89 -0.11 -0.27 16 19 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 20 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 23 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 27 H 0.05 0.48 7.72 -51.93 -0.40 0.08 16 28 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.07 0.83 4.72 -51.93 -0.25 0.59 16 30 H 0.06 0.43 6.33 -51.92 -0.33 0.10 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 1.13 4.44 -51.93 -0.23 0.90 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.53 6.61 -51.93 -0.34 0.18 16 36 H 0.07 0.57 6.61 -51.92 -0.34 0.23 16 37 H 0.07 0.48 6.33 -51.93 -0.33 0.15 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.85 5.74 -51.93 -0.30 0.55 16 44 H 0.41 4.23 7.22 -34.47 -0.25 3.98 16 45 H 0.13 2.05 6.76 -51.93 -0.35 1.70 16 46 H 0.13 2.10 8.14 -51.92 -0.42 1.67 16 47 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 48 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 49 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -32.84 364.33 -9.68 -42.52 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.41 Total: 3.14 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: -0.41 Total: -32.12 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.76 Total: -39.61 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -1.93 Total: -38.69 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 42.97 SS G_CDS: -0.50 Total: 42.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.84 -9.68 -42.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327796.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.583 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds