Wall clock time and date at job start Tue Mar 31 2020 11:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46979 * 2 1 4 4 C 1.53004 * 109.47511 * 239.99718 * 2 1 3 5 5 C 1.53008 * 109.47164 * 119.99676 * 2 1 3 6 6 H 1.08996 * 109.47105 * 306.27376 * 5 2 1 7 7 C 1.53005 * 109.46955 * 186.27785 * 5 2 1 8 8 C 1.52993 * 109.46927 * 180.02562 * 7 5 2 9 9 C 1.53004 * 109.47568 * 59.99571 * 8 7 5 10 10 C 1.52995 * 109.46992 * 300.00333 * 9 8 7 11 11 C 1.52998 * 109.47394 * 59.99950 * 10 9 8 12 12 H 1.08998 * 109.47350 * 59.99320 * 11 10 9 13 13 N 1.46502 * 109.47189 * 179.97438 * 11 10 9 14 14 S 1.65597 * 119.99976 * 265.27049 * 13 11 10 15 15 O 1.42094 * 104.27830 * 180.79599 * 14 13 11 16 16 O 1.42097 * 104.27921 * 308.65874 * 14 13 11 17 17 C 1.81402 * 104.44619 * 64.72444 * 14 13 11 18 18 C 1.52998 * 109.47197 * 179.97438 * 17 14 13 19 19 C 1.50696 * 109.47495 * 179.97438 * 18 17 14 20 20 H 1.07996 * 119.99952 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00407 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00308 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99861 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46943 * 89.99542 * 23 21 19 25 25 H 1.48492 * 109.47089 * 209.99883 * 23 21 19 26 26 H 1.48503 * 109.47031 * 329.99929 * 23 21 19 27 27 H 1.09002 * 109.47104 * 288.64492 * 1 2 3 28 28 H 1.08998 * 109.47526 * 48.64796 * 1 2 3 29 29 H 1.09001 * 109.46902 * 168.64597 * 1 2 3 30 30 H 1.09008 * 109.47155 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47188 * 299.99257 * 3 2 1 32 32 H 1.08999 * 109.47561 * 60.00060 * 3 2 1 33 33 H 1.08997 * 109.46741 * 300.00569 * 4 2 1 34 34 H 1.09006 * 109.46729 * 59.99853 * 4 2 1 35 35 H 1.08994 * 109.47502 * 180.02562 * 4 2 1 36 36 H 1.09008 * 109.46870 * 300.00148 * 7 5 2 37 37 H 1.09001 * 109.46845 * 59.99890 * 7 5 2 38 38 H 1.08999 * 109.47449 * 180.02562 * 8 7 5 39 39 H 1.09008 * 109.47164 * 299.99597 * 8 7 5 40 40 H 1.08998 * 109.46477 * 60.00232 * 9 8 7 41 41 H 1.08997 * 109.47177 * 179.97438 * 9 8 7 42 42 H 1.08998 * 109.47427 * 299.99317 * 10 9 8 43 43 H 1.09007 * 109.46916 * 179.97438 * 10 9 8 44 44 H 0.97001 * 119.99467 * 84.99878 * 13 11 10 45 45 H 1.08992 * 109.47414 * 299.99866 * 17 14 13 46 46 H 1.09004 * 109.47023 * 60.00122 * 17 14 13 47 47 H 1.09001 * 109.47426 * 300.00503 * 18 17 14 48 48 H 1.09004 * 109.46676 * 60.00348 * 18 17 14 49 49 H 0.96998 * 119.99515 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.5879 -0.2763 2.1357 7 6 3.5619 -0.5860 1.3307 8 6 4.0719 -1.3077 2.5795 9 6 3.6948 -2.7885 2.5028 10 6 2.1730 -2.9236 2.4214 11 6 1.6629 -2.2020 1.1724 12 1 2.1150 -2.6465 0.2858 13 7 0.2057 -2.3320 1.0943 14 16 -0.4702 -3.5464 0.1940 15 8 -1.8703 -3.3499 0.3355 16 8 0.1608 -3.4352 -1.0744 17 6 0.0465 -5.0710 1.0303 18 6 -0.5226 -6.2797 0.2847 19 6 -0.0930 -7.5463 0.9790 20 1 0.5239 -7.4943 1.8639 21 6 -0.4883 -8.7714 0.4852 22 7 -0.1137 -9.8767 1.0915 23 14 -1.5559 -8.8613 -1.0450 24 1 -0.6899 -8.9338 -2.2492 25 1 -2.4145 -10.0710 -0.9791 26 1 -2.4120 -7.6503 -1.1231 27 1 -0.3633 0.3286 0.9737 28 1 -0.3634 0.6789 -0.7714 29 1 -0.3633 -1.0076 -0.2023 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 4.0140 -1.0309 0.4441 37 1 3.8305 0.4690 1.3850 38 1 5.1560 -1.2110 2.6378 39 1 3.6198 -0.8631 3.4662 40 1 4.1469 -3.2330 1.6162 41 1 4.0586 -3.3027 3.3923 42 1 1.7208 -2.4792 3.3080 43 1 1.9043 -3.9786 2.3663 44 1 -0.3631 -1.7089 1.5731 45 1 1.1348 -5.1291 1.0401 46 1 -0.3265 -5.0678 2.0545 47 1 -1.6110 -6.2214 0.2751 48 1 -0.1500 -6.2831 -0.7397 49 1 -0.3915 -10.7386 0.7438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111327796.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:52 Heat of formation + Delta-G solvation = -123.522916 kcal Electronic energy + Delta-G solvation = -27132.859292 eV Core-core repulsion = 23606.027168 eV Total energy + Delta-G solvation = -3526.832124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08232 -38.14192 -37.06021 -36.62625 -35.89290 -35.31256 -33.49547 -30.72836 -29.61793 -28.17740 -28.10370 -27.70670 -23.76900 -23.35083 -22.93303 -20.98473 -20.32589 -19.62983 -19.32051 -18.31171 -17.48109 -17.17123 -16.45995 -16.36671 -16.04055 -15.58736 -15.20795 -15.04118 -14.92438 -14.84177 -14.51598 -14.07326 -14.03870 -13.78703 -13.53299 -13.22103 -13.13656 -13.09677 -13.00001 -12.95213 -12.82323 -12.75437 -12.44851 -12.30201 -12.25981 -12.17124 -12.00460 -11.83482 -11.71254 -11.57667 -11.46602 -11.30962 -11.10236 -10.95081 -10.85220 -10.84197 -9.93326 -8.37331 -6.42813 -0.69717 1.30576 1.32576 1.42529 1.81515 2.28502 2.74118 2.96574 3.24168 3.61770 3.72650 3.83949 3.92488 4.03902 4.13491 4.16651 4.25217 4.32744 4.44524 4.48343 4.53536 4.60687 4.66847 4.72345 4.76371 4.85141 4.89105 4.99216 5.01051 5.01668 5.05714 5.10590 5.16850 5.17390 5.30341 5.30969 5.32572 5.36113 5.38476 5.45059 5.47585 5.52982 5.58692 5.67820 5.74619 6.16185 6.17617 6.62961 7.21561 8.78212 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.004207 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.263246 B = 6654.236509 C = 7544.526789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.059 4.059 3 C -0.138 4.138 4 C -0.163 4.163 5 C -0.069 4.069 6 H 0.090 0.910 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.121 4.121 10 C -0.150 4.150 11 C 0.146 3.854 12 H 0.084 0.916 13 N -1.098 6.098 14 S 2.614 3.386 15 O -0.996 6.996 16 O -0.980 6.980 17 C -0.594 4.594 18 C -0.016 4.016 19 C -0.526 4.526 20 H 0.050 0.950 21 C 0.015 3.985 22 N -0.939 5.939 23 Si 0.922 3.078 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.251 1.251 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.426 0.574 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.029 0.971 48 H 0.030 0.970 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.893 24.363 2.152 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.059 4.059 3 C -0.195 4.195 4 C -0.220 4.220 5 C -0.089 4.089 6 H 0.109 0.891 7 C -0.153 4.153 8 C -0.153 4.153 9 C -0.159 4.159 10 C -0.189 4.189 11 C 0.039 3.961 12 H 0.102 0.898 13 N -0.859 5.859 14 S 2.709 3.291 15 O -0.986 6.986 16 O -0.970 6.970 17 C -0.725 4.725 18 C -0.055 4.055 19 C -0.565 4.565 20 H 0.068 0.932 21 C -0.183 4.183 22 N -0.579 5.579 23 Si 0.745 3.255 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.175 1.175 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.265 0.735 45 H 0.157 0.843 46 H 0.157 0.843 47 H 0.047 0.953 48 H 0.049 0.951 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.434 24.193 1.259 25.341 hybrid contribution -0.509 -1.019 0.090 1.142 sum 6.925 23.174 1.349 24.224 Atomic orbital electron populations 1.22333 0.95762 1.01317 1.02051 1.20466 0.94844 0.95946 0.94602 1.21921 1.01645 0.94164 1.01818 1.22177 1.01378 1.01224 0.97196 1.21397 0.96967 0.92236 0.98263 0.89128 1.21726 0.93390 1.01764 0.98447 1.21543 1.01172 0.94262 0.98315 1.21533 0.94337 0.97771 1.02291 1.22273 0.97219 1.00668 0.98701 1.21143 0.77833 0.98427 0.98695 0.89792 1.55655 1.15186 1.45891 1.69206 1.04664 0.73204 0.76034 0.75156 1.93517 1.32453 1.85432 1.87219 1.93516 1.77408 1.85860 1.40172 1.30459 1.12367 1.16083 1.13561 1.19354 0.96739 0.93256 0.96115 1.21156 1.32620 0.89974 1.12726 0.93176 1.25843 0.97026 0.95324 1.00145 1.70004 1.47194 0.98443 1.42225 0.86064 0.80063 0.79042 0.80325 1.18445 1.19800 1.17515 0.91157 0.93337 0.93761 0.91344 0.93222 0.91850 0.92346 0.93616 0.91634 0.91886 0.89605 0.91042 0.91153 0.92298 0.91282 0.89770 0.92216 0.73532 0.84330 0.84327 0.95277 0.95149 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 7.04 71.98 0.51 -2.59 16 2 C -0.06 -1.01 0.58 -52.18 -0.03 -1.04 16 3 C -0.14 -1.82 7.92 71.98 0.57 -1.25 16 4 C -0.16 -3.50 7.70 71.98 0.55 -2.94 16 5 C -0.07 -1.04 1.34 -10.79 -0.01 -1.06 16 6 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 7 C -0.12 -1.46 4.45 30.59 0.14 -1.32 16 8 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 9 C -0.12 -1.96 5.92 30.59 0.18 -1.78 16 10 C -0.15 -2.77 5.48 30.59 0.17 -2.61 16 11 C 0.15 2.91 1.60 44.99 0.07 2.98 16 12 H 0.08 1.93 5.71 -2.39 -0.01 1.92 16 13 N -1.10 -24.91 2.92 -169.38 -0.49 -25.40 16 14 S 2.61 85.68 4.68 -56.49 -0.26 85.42 16 15 O -1.00 -38.30 18.08 -127.65 -2.31 -40.61 16 16 O -0.98 -36.28 15.49 -127.65 -1.98 -38.26 16 17 C -0.59 -21.47 5.12 71.98 0.37 -21.10 16 18 C -0.02 -0.74 4.05 29.85 0.12 -0.62 16 19 C -0.53 -29.80 9.66 25.60 0.25 -29.56 16 20 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 21 C 0.02 0.89 5.47 84.65 0.46 1.35 16 22 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 23 Si 0.92 44.10 27.47 68.60 1.88 45.98 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 27 H 0.07 1.10 7.72 -2.39 -0.02 1.08 16 28 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 29 H 0.04 1.07 4.72 -2.39 -0.01 1.05 16 30 H 0.07 0.77 6.33 -2.38 -0.02 0.75 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 1.56 4.44 -2.39 -0.01 1.55 16 34 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.06 1.20 6.61 -2.39 -0.02 1.18 16 36 H 0.06 0.89 6.61 -2.38 -0.02 0.87 16 37 H 0.09 0.84 6.33 -2.39 -0.02 0.83 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.30 5.74 -2.38 -0.01 1.28 16 44 H 0.43 7.87 7.22 -96.74 -0.70 7.17 16 45 H 0.14 4.57 6.76 -2.39 -0.02 4.55 16 46 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 47 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 48 H 0.03 1.41 7.57 -2.38 -0.02 1.39 16 49 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -71.30 364.33 0.84 -70.46 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.18 Total: 22.65 kcal Atomic # 6 Polarization: -66.29 SS G_CDS: 3.52 Total: -62.77 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -0.20 Total: -82.88 kcal Atomic # 8 Polarization: -74.58 SS G_CDS: -4.29 Total: -78.87 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Atomic # 16 Polarization: 85.68 SS G_CDS: -0.26 Total: 85.42 kcal Total: -71.30 0.84 -70.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327796.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.060 kcal (2) G-P(sol) polarization free energy of solvation -71.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds