Wall clock time and date at job start Tue Mar 31 2020 11:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 C 1.53001 * 109.47019 * 240.00264 * 2 1 3 5 5 C 1.52995 * 109.46940 * 120.00124 * 2 1 3 6 6 H 1.09006 * 109.46586 * 186.59899 * 5 2 1 7 7 C 1.52994 * 109.47130 * 306.59438 * 5 2 1 8 8 C 1.53008 * 109.47026 * 180.02562 * 7 5 2 9 9 C 1.52990 * 109.47151 * 300.00480 * 8 7 5 10 10 C 1.52994 * 109.47547 * 59.99839 * 9 8 7 11 11 C 1.52999 * 109.47374 * 66.60097 * 5 2 1 12 12 H 1.08996 * 109.47017 * 59.99657 * 11 5 2 13 13 N 1.46504 * 109.46773 * 299.99753 * 11 5 2 14 14 S 1.65603 * 119.99946 * 145.00071 * 13 11 5 15 15 O 1.42102 * 104.27363 * 308.92913 * 14 13 11 16 16 O 1.42099 * 104.27706 * 181.06864 * 14 13 11 17 17 C 1.81399 * 104.44757 * 64.99702 * 14 13 11 18 18 C 1.53003 * 109.47222 * 180.02562 * 17 14 13 19 19 C 1.50693 * 109.47461 * 180.02562 * 18 17 14 20 20 H 1.07995 * 119.99942 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00150 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99638 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99991 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47034 * 179.97438 * 23 21 19 25 25 H 1.48491 * 109.47288 * 300.00051 * 23 21 19 26 26 H 1.48497 * 109.46945 * 60.00098 * 23 21 19 27 27 H 1.08999 * 109.47132 * 290.23146 * 1 2 3 28 28 H 1.09007 * 109.47735 * 50.22995 * 1 2 3 29 29 H 1.09006 * 109.47409 * 170.22851 * 1 2 3 30 30 H 1.08998 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47106 * 300.00031 * 3 2 1 32 32 H 1.08993 * 109.47249 * 60.00090 * 3 2 1 33 33 H 1.08997 * 109.47037 * 299.99822 * 4 2 1 34 34 H 1.09008 * 109.47371 * 59.99784 * 4 2 1 35 35 H 1.08998 * 109.47093 * 179.97438 * 4 2 1 36 36 H 1.09006 * 109.47010 * 60.00720 * 7 5 2 37 37 H 1.08996 * 109.47924 * 300.00207 * 7 5 2 38 38 H 1.08998 * 109.46772 * 180.02562 * 8 7 5 39 39 H 1.08999 * 109.47021 * 60.00695 * 8 7 5 40 40 H 1.09006 * 109.47262 * 299.99631 * 9 8 7 41 41 H 1.09002 * 109.47342 * 180.02562 * 9 8 7 42 42 H 1.09004 * 109.47900 * 179.97438 * 10 9 8 43 43 H 1.08999 * 109.47380 * 59.99600 * 10 9 8 44 44 H 0.97000 * 119.99983 * 324.99629 * 13 11 5 45 45 H 1.08995 * 109.47227 * 60.00214 * 17 14 13 46 46 H 1.08998 * 109.47626 * 299.99978 * 17 14 13 47 47 H 1.09008 * 109.47130 * 59.99913 * 18 17 14 48 48 H 1.08998 * 109.46791 * 300.00476 * 18 17 14 49 49 H 0.96997 * 119.99914 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 3.1235 -0.6201 1.3102 7 6 1.3991 -0.1021 2.4929 8 6 1.9096 -0.8230 3.7422 9 6 1.5400 -2.3054 3.6624 10 6 2.1808 -2.9246 2.4187 11 6 1.6698 -2.2036 1.1691 12 1 2.1264 -2.6447 0.2830 13 7 0.2134 -2.3395 1.0871 14 16 -0.4552 -3.5515 0.1779 15 8 0.1826 -3.4337 -1.0864 16 8 -1.8566 -3.3582 0.3125 17 6 0.0596 -5.0786 1.0107 18 6 -0.5021 -6.2853 0.2561 19 6 -0.0750 -7.5539 0.9482 20 1 0.5363 -7.5046 1.8371 21 6 -0.4637 -8.7777 0.4460 22 7 -1.2077 -8.8378 -0.6369 23 14 0.0663 -10.3503 1.3035 24 1 -0.4789 -11.5215 0.5711 25 1 1.5491 -10.4264 1.3259 26 1 -0.4505 -10.3533 2.6957 27 1 -0.3633 0.3554 0.9642 28 1 -0.3635 0.6574 -0.7899 29 1 -0.3634 -1.0128 -0.1744 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1299 -0.7208 -1.2495 36 1 0.3155 -0.2032 2.4319 37 1 1.6628 0.9540 2.5501 38 1 1.4528 -0.3821 4.6282 39 1 2.9932 -0.7214 3.8030 40 1 0.4564 -2.4070 3.6016 41 1 1.9033 -2.8189 4.5526 42 1 1.9178 -3.9809 2.3620 43 1 3.2643 -2.8231 2.4794 44 1 -0.3592 -1.7197 1.5653 45 1 -0.3191 -5.0805 2.0328 46 1 1.1480 -5.1349 1.0263 47 1 -0.1231 -6.2833 -0.7660 48 1 -1.5905 -6.2293 0.2400 49 1 -1.4832 -8.0212 -1.0819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111327798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:57 Heat of formation + Delta-G solvation = -105.033906 kcal Electronic energy + Delta-G solvation = -27309.714076 eV Core-core repulsion = 23783.683695 eV Total energy + Delta-G solvation = -3526.030381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49998 -36.65594 -35.98190 -35.51347 -34.25855 -33.71213 -31.10039 -30.23039 -29.14030 -27.29432 -27.09453 -25.07481 -23.05726 -22.49131 -21.95276 -20.14383 -18.81799 -18.72521 -17.70346 -16.75826 -16.14869 -15.88155 -15.60050 -14.97315 -14.85190 -14.31164 -14.10821 -13.87193 -13.77917 -13.51768 -13.43731 -12.88855 -12.74209 -12.62011 -12.47423 -12.10738 -12.01974 -11.88338 -11.81360 -11.68726 -11.56508 -11.43668 -11.32692 -11.13046 -11.02828 -10.92152 -10.71623 -10.51705 -10.49109 -10.40795 -10.37689 -10.18445 -10.05256 -9.91894 -9.05422 -8.63321 -8.46157 -6.47550 -4.20330 0.72330 3.08976 3.38424 3.40213 3.59394 4.14976 4.41076 4.43147 4.47102 4.55810 4.64397 4.83957 4.93010 4.96940 5.13969 5.16881 5.19412 5.28035 5.35013 5.37713 5.40482 5.47948 5.53171 5.57685 5.61027 5.63935 5.72411 5.75456 5.80637 5.87284 5.92849 5.95429 6.00985 6.05378 6.07205 6.11543 6.18378 6.27730 6.31853 6.38153 6.44332 6.57065 6.96482 7.04912 7.12790 7.96414 8.29636 8.72616 9.52003 10.92250 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.004001 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.729963 B = 6996.585027 C = 7691.317722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.159 4.159 5 C -0.075 4.075 6 H 0.081 0.919 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.118 4.118 10 C -0.148 4.148 11 C 0.152 3.848 12 H 0.097 0.903 13 N -1.115 6.115 14 S 2.587 3.413 15 O -0.962 6.962 16 O -0.969 6.969 17 C -0.586 4.586 18 C 0.015 3.985 19 C -0.599 4.599 20 H 0.055 0.945 21 C 0.016 3.984 22 N -0.905 5.905 23 Si 1.072 2.928 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.287 1.287 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.414 0.586 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.024 0.976 48 H 0.023 0.977 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.524 19.856 7.028 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.216 4.216 5 C -0.095 4.095 6 H 0.099 0.901 7 C -0.157 4.157 8 C -0.156 4.156 9 C -0.156 4.156 10 C -0.187 4.187 11 C 0.044 3.956 12 H 0.114 0.886 13 N -0.874 5.874 14 S 2.684 3.316 15 O -0.952 6.952 16 O -0.960 6.960 17 C -0.719 4.719 18 C -0.023 4.023 19 C -0.639 4.639 20 H 0.073 0.927 21 C -0.189 4.189 22 N -0.541 5.541 23 Si 0.900 3.100 24 H -0.205 1.205 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.250 0.750 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.042 0.958 48 H 0.041 0.959 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.992 18.253 6.059 20.826 hybrid contribution 0.256 1.697 0.888 1.933 sum 8.248 19.950 6.947 22.678 Atomic orbital electron populations 1.22399 0.94940 1.02833 1.01277 1.20454 0.95795 0.94808 0.94851 1.21924 1.00632 0.95785 1.01473 1.22130 1.00348 1.02723 0.96438 1.21360 1.00315 0.93381 0.94429 0.90100 1.21730 1.00783 0.99337 0.93834 1.21547 1.00913 0.95623 0.97549 1.21472 1.01230 0.95339 0.97539 1.22230 1.00839 1.00518 0.95071 1.20899 0.79770 0.96557 0.98338 0.88562 1.56107 1.14186 1.47873 1.69224 1.05700 0.74132 0.76296 0.75438 1.93530 1.76953 1.85578 1.39129 1.93558 1.30441 1.85144 1.86841 1.30450 1.11185 1.17317 1.12961 1.19057 0.96157 0.91747 0.95383 1.21828 1.36907 0.91030 1.14096 0.92700 1.25962 0.94465 1.02232 0.96206 1.70783 1.33171 1.32299 1.17799 0.83492 0.76038 0.75186 0.75296 1.20548 1.21285 1.21306 0.92414 0.93325 0.91486 0.92921 0.92890 0.92720 0.89756 0.92980 0.93145 0.91386 0.91656 0.92233 0.92103 0.91624 0.92009 0.90733 0.90779 0.74975 0.86031 0.86045 0.95818 0.95931 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 6.93 37.16 0.26 -1.49 16 2 C -0.06 -0.59 0.58 -154.51 -0.09 -0.68 16 3 C -0.14 -1.18 8.24 37.16 0.31 -0.88 16 4 C -0.16 -1.86 7.92 37.16 0.29 -1.57 16 5 C -0.07 -0.68 1.52 -90.63 -0.14 -0.82 16 6 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 7 C -0.12 -0.95 4.29 -26.73 -0.11 -1.07 16 8 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 9 C -0.12 -1.07 5.76 -26.74 -0.15 -1.23 16 10 C -0.15 -1.47 5.60 -26.71 -0.15 -1.62 16 11 C 0.15 1.64 1.93 -67.90 -0.13 1.51 16 12 H 0.10 1.13 5.71 -51.93 -0.30 0.84 16 13 N -1.11 -13.86 2.20 -4.87 -0.01 -13.88 16 14 S 2.59 44.94 4.68 -107.50 -0.50 44.44 16 15 O -0.96 -18.74 15.46 -57.54 -0.89 -19.63 16 16 O -0.97 -19.83 18.08 -57.54 -1.04 -20.87 16 17 C -0.59 -11.12 5.16 37.16 0.19 -10.93 16 18 C 0.02 0.39 4.29 -27.88 -0.12 0.27 16 19 C -0.60 -16.69 9.11 -34.44 -0.31 -17.00 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 22 N -0.91 -27.66 13.65 55.43 0.76 -26.90 16 23 Si 1.07 24.77 29.90 -169.99 -5.08 19.68 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 27 H 0.06 0.55 5.64 -51.93 -0.29 0.25 16 28 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 29 H 0.07 0.88 4.63 -51.93 -0.24 0.64 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.05 0.41 6.62 -51.93 -0.34 0.07 16 33 H 0.08 1.18 4.37 -51.93 -0.23 0.95 16 34 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.57 4.68 -51.93 -0.24 0.32 16 37 H 0.06 0.47 6.62 -51.93 -0.34 0.13 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.63 7.45 -51.93 -0.39 0.24 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.83 5.79 -51.93 -0.30 0.53 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.41 4.53 5.47 -34.47 -0.19 4.34 16 45 H 0.12 2.12 8.14 -51.93 -0.42 1.69 16 46 H 0.12 2.07 6.78 -51.93 -0.35 1.72 16 47 H 0.02 0.62 8.01 -51.92 -0.42 0.21 16 48 H 0.02 0.60 8.01 -51.93 -0.42 0.18 16 49 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 LS Contribution 362.29 15.07 5.46 5.46 Total: -1.00 -33.68 362.29 -9.92 -43.59 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.19 Total: 4.31 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: -0.42 Total: -36.20 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.75 Total: -40.78 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.93 Total: -40.51 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.68 kcal Atomic # 16 Polarization: 44.94 SS G_CDS: -0.50 Total: 44.44 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.68 -9.92 -43.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.439 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds