Wall clock time and date at job start Tue Mar 31 2020 11:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 C 1.53001 * 109.47019 * 240.00264 * 2 1 3 5 5 C 1.52995 * 109.46940 * 120.00124 * 2 1 3 6 6 H 1.09006 * 109.46586 * 186.59899 * 5 2 1 7 7 C 1.52994 * 109.47130 * 306.59438 * 5 2 1 8 8 C 1.53008 * 109.47026 * 180.02562 * 7 5 2 9 9 C 1.52990 * 109.47151 * 300.00480 * 8 7 5 10 10 C 1.52994 * 109.47547 * 59.99839 * 9 8 7 11 11 C 1.52999 * 109.47374 * 66.60097 * 5 2 1 12 12 H 1.08996 * 109.47017 * 59.99657 * 11 5 2 13 13 N 1.46504 * 109.46773 * 299.99753 * 11 5 2 14 14 S 1.65603 * 119.99946 * 145.00071 * 13 11 5 15 15 O 1.42102 * 104.27363 * 308.92913 * 14 13 11 16 16 O 1.42099 * 104.27706 * 181.06864 * 14 13 11 17 17 C 1.81399 * 104.44757 * 64.99702 * 14 13 11 18 18 C 1.53003 * 109.47222 * 180.02562 * 17 14 13 19 19 C 1.50693 * 109.47461 * 180.02562 * 18 17 14 20 20 H 1.07995 * 119.99942 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00150 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99638 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99991 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47034 * 179.97438 * 23 21 19 25 25 H 1.48491 * 109.47288 * 300.00051 * 23 21 19 26 26 H 1.48497 * 109.46945 * 60.00098 * 23 21 19 27 27 H 1.08999 * 109.47132 * 290.23146 * 1 2 3 28 28 H 1.09007 * 109.47735 * 50.22995 * 1 2 3 29 29 H 1.09006 * 109.47409 * 170.22851 * 1 2 3 30 30 H 1.08998 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47106 * 300.00031 * 3 2 1 32 32 H 1.08993 * 109.47249 * 60.00090 * 3 2 1 33 33 H 1.08997 * 109.47037 * 299.99822 * 4 2 1 34 34 H 1.09008 * 109.47371 * 59.99784 * 4 2 1 35 35 H 1.08998 * 109.47093 * 179.97438 * 4 2 1 36 36 H 1.09006 * 109.47010 * 60.00720 * 7 5 2 37 37 H 1.08996 * 109.47924 * 300.00207 * 7 5 2 38 38 H 1.08998 * 109.46772 * 180.02562 * 8 7 5 39 39 H 1.08999 * 109.47021 * 60.00695 * 8 7 5 40 40 H 1.09006 * 109.47262 * 299.99631 * 9 8 7 41 41 H 1.09002 * 109.47342 * 180.02562 * 9 8 7 42 42 H 1.09004 * 109.47900 * 179.97438 * 10 9 8 43 43 H 1.08999 * 109.47380 * 59.99600 * 10 9 8 44 44 H 0.97000 * 119.99983 * 324.99629 * 13 11 5 45 45 H 1.08995 * 109.47227 * 60.00214 * 17 14 13 46 46 H 1.08998 * 109.47626 * 299.99978 * 17 14 13 47 47 H 1.09008 * 109.47130 * 59.99913 * 18 17 14 48 48 H 1.08998 * 109.46791 * 300.00476 * 18 17 14 49 49 H 0.96997 * 119.99914 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 3.1235 -0.6201 1.3102 7 6 1.3991 -0.1021 2.4929 8 6 1.9096 -0.8230 3.7422 9 6 1.5400 -2.3054 3.6624 10 6 2.1808 -2.9246 2.4187 11 6 1.6698 -2.2036 1.1691 12 1 2.1264 -2.6447 0.2830 13 7 0.2134 -2.3395 1.0871 14 16 -0.4552 -3.5515 0.1779 15 8 0.1826 -3.4337 -1.0864 16 8 -1.8566 -3.3582 0.3125 17 6 0.0596 -5.0786 1.0107 18 6 -0.5021 -6.2853 0.2561 19 6 -0.0750 -7.5539 0.9482 20 1 0.5363 -7.5046 1.8371 21 6 -0.4637 -8.7777 0.4460 22 7 -1.2077 -8.8378 -0.6369 23 14 0.0663 -10.3503 1.3035 24 1 -0.4789 -11.5215 0.5711 25 1 1.5491 -10.4264 1.3259 26 1 -0.4505 -10.3533 2.6957 27 1 -0.3633 0.3554 0.9642 28 1 -0.3635 0.6574 -0.7899 29 1 -0.3634 -1.0128 -0.1744 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1299 -0.7208 -1.2495 36 1 0.3155 -0.2032 2.4319 37 1 1.6628 0.9540 2.5501 38 1 1.4528 -0.3821 4.6282 39 1 2.9932 -0.7214 3.8030 40 1 0.4564 -2.4070 3.6016 41 1 1.9033 -2.8189 4.5526 42 1 1.9178 -3.9809 2.3620 43 1 3.2643 -2.8231 2.4794 44 1 -0.3592 -1.7197 1.5653 45 1 -0.3191 -5.0805 2.0328 46 1 1.1480 -5.1349 1.0263 47 1 -0.1231 -6.2833 -0.7660 48 1 -1.5905 -6.2293 0.2400 49 1 -1.4832 -8.0212 -1.0819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111327798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:56 Heat of formation + Delta-G solvation = -126.692036 kcal Electronic energy + Delta-G solvation = -27310.653243 eV Core-core repulsion = 23783.683695 eV Total energy + Delta-G solvation = -3526.969548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30709 -38.20920 -37.11091 -36.73640 -36.28694 -34.64050 -33.02416 -31.04187 -29.95496 -28.05479 -27.96919 -27.08883 -24.08053 -23.71949 -23.16606 -21.12756 -19.96415 -19.61515 -19.33367 -18.50462 -17.46560 -17.15116 -16.60561 -16.18569 -15.68893 -15.66355 -15.32456 -15.11918 -15.04500 -14.79887 -14.53218 -14.22684 -13.97189 -13.73932 -13.40069 -13.29349 -13.25649 -13.12162 -12.90246 -12.87654 -12.78176 -12.57264 -12.51056 -12.33806 -12.31122 -12.07919 -12.00460 -11.90125 -11.83802 -11.68048 -11.45669 -11.13286 -11.05481 -10.74411 -10.68410 -10.62999 -9.96172 -8.75948 -6.50040 -0.74365 1.52411 1.61094 1.79551 1.80979 2.53888 2.71224 3.08546 3.18421 3.61628 3.71303 3.80155 3.86229 3.97127 4.10512 4.15562 4.22245 4.32369 4.43693 4.46893 4.50093 4.63474 4.65842 4.67605 4.76875 4.83716 4.86389 4.94130 4.96614 4.98727 5.01666 5.08798 5.14084 5.15589 5.24057 5.27617 5.32148 5.33090 5.36855 5.47596 5.52696 5.56679 5.68769 5.69328 5.80351 6.06583 6.13450 6.43445 7.33077 8.63548 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.004001 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.729963 B = 6996.585027 C = 7691.317722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.058 4.058 3 C -0.136 4.136 4 C -0.163 4.163 5 C -0.068 4.068 6 H 0.099 0.901 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.121 4.121 10 C -0.148 4.148 11 C 0.144 3.856 12 H 0.085 0.915 13 N -1.092 6.092 14 S 2.614 3.386 15 O -0.984 6.984 16 O -1.002 7.002 17 C -0.587 4.587 18 C 0.006 3.994 19 C -0.612 4.612 20 H 0.067 0.933 21 C -0.041 4.041 22 N -0.936 5.936 23 Si 1.122 2.878 24 H -0.285 1.285 25 H -0.263 1.263 26 H -0.265 1.265 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.424 0.576 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.002 0.998 48 H -0.001 1.001 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 21.388 9.503 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.058 4.058 3 C -0.193 4.193 4 C -0.220 4.220 5 C -0.088 4.088 6 H 0.117 0.883 7 C -0.156 4.156 8 C -0.151 4.151 9 C -0.158 4.158 10 C -0.187 4.187 11 C 0.037 3.963 12 H 0.103 0.897 13 N -0.856 5.856 14 S 2.709 3.291 15 O -0.974 6.974 16 O -0.992 6.992 17 C -0.718 4.718 18 C -0.033 4.033 19 C -0.651 4.651 20 H 0.086 0.914 21 C -0.239 4.239 22 N -0.572 5.572 23 Si 0.941 3.059 24 H -0.210 1.210 25 H -0.188 1.188 26 H -0.190 1.190 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.263 0.737 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.021 0.979 48 H 0.017 0.983 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.052 19.801 8.547 23.795 hybrid contribution -0.359 1.320 0.092 1.371 sum 9.693 21.121 8.640 24.793 Atomic orbital electron populations 1.22462 0.96078 1.01324 1.02227 1.20450 0.94870 0.96012 0.94425 1.21875 1.01253 0.94244 1.01965 1.22151 1.01261 1.01286 0.97299 1.21357 1.01421 0.91501 0.94537 0.88294 1.21741 1.00376 1.00221 0.93212 1.21513 1.01646 0.94305 0.97627 1.21506 1.00663 0.96555 0.97119 1.22240 1.02060 0.99517 0.94860 1.21157 0.78068 0.98437 0.98605 0.89668 1.55640 1.15349 1.45868 1.68752 1.04646 0.73117 0.76133 0.75167 1.93506 1.77210 1.85885 1.40783 1.93504 1.32815 1.85609 1.87322 1.30411 1.12281 1.15968 1.13165 1.18963 0.94927 0.94226 0.95142 1.22310 1.36362 0.92043 1.14350 0.91434 1.27651 0.93738 1.06480 0.96023 1.70925 1.35401 1.31423 1.19483 0.82897 0.77046 0.70839 0.75086 1.21049 1.18824 1.18974 0.90606 0.93617 0.93886 0.91882 0.93301 0.91397 0.92354 0.93705 0.91732 0.91865 0.90045 0.91369 0.91036 0.92446 0.91540 0.92159 0.88943 0.73660 0.84363 0.84069 0.97929 0.98297 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 6.93 71.98 0.50 -2.96 16 2 C -0.06 -1.04 0.58 -52.18 -0.03 -1.07 16 3 C -0.14 -1.88 8.24 71.98 0.59 -1.29 16 4 C -0.16 -3.69 7.92 71.98 0.57 -3.12 16 5 C -0.07 -1.04 1.52 -10.80 -0.02 -1.06 16 6 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 7 C -0.12 -1.47 4.29 30.59 0.13 -1.34 16 8 C -0.11 -1.33 5.92 30.59 0.18 -1.15 16 9 C -0.12 -1.86 5.76 30.59 0.18 -1.68 16 10 C -0.15 -2.60 5.60 30.61 0.17 -2.43 16 11 C 0.14 2.89 1.93 45.01 0.09 2.98 16 12 H 0.09 1.95 5.71 -2.39 -0.01 1.93 16 13 N -1.09 -26.42 2.20 -169.32 -0.37 -26.80 16 14 S 2.61 92.95 4.68 -56.49 -0.26 92.69 16 15 O -0.98 -39.74 15.46 -127.65 -1.97 -41.72 16 16 O -1.00 -42.21 18.08 -127.65 -2.31 -44.52 16 17 C -0.59 -22.50 5.16 71.98 0.37 -22.13 16 18 C 0.01 0.32 4.29 29.85 0.13 0.45 16 19 C -0.61 -34.43 9.11 25.60 0.23 -34.20 16 20 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 21 C -0.04 -2.40 5.46 84.65 0.46 -1.94 16 22 N -0.94 -58.99 13.65 21.45 0.29 -58.70 16 23 Si 1.12 49.26 29.90 68.60 2.05 51.31 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 H 0.08 1.29 5.64 -2.39 -0.01 1.27 16 28 H 0.04 0.97 8.12 -2.38 -0.02 0.95 16 29 H 0.04 1.12 4.63 -2.38 -0.01 1.10 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.07 0.77 6.62 -2.39 -0.02 0.76 16 33 H 0.06 1.64 4.37 -2.39 -0.01 1.63 16 34 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 0.85 4.68 -2.38 -0.01 0.84 16 37 H 0.08 0.81 6.62 -2.39 -0.02 0.79 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.97 7.45 -2.38 -0.02 0.95 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.23 5.79 -2.38 -0.01 1.22 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.42 8.81 5.47 -96.74 -0.53 8.28 16 45 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 46 H 0.14 4.77 6.78 -2.39 -0.02 4.75 16 47 H 0.00 0.14 8.01 -2.38 -0.02 0.12 16 48 H 0.00 -0.07 8.01 -2.39 -0.02 -0.09 16 49 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 Total: -1.00 -74.81 362.29 1.49 -73.32 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.51 Total: 25.33 kcal Atomic # 6 Polarization: -74.48 SS G_CDS: 3.56 Total: -70.92 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -0.08 Total: -85.50 kcal Atomic # 8 Polarization: -81.96 SS G_CDS: -4.28 Total: -86.24 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.31 kcal Atomic # 16 Polarization: 92.95 SS G_CDS: -0.26 Total: 92.69 kcal Total: -74.81 1.49 -73.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.371 kcal (2) G-P(sol) polarization free energy of solvation -74.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds