Wall clock time and date at job start Tue Mar 31 2020 11:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47200 * 2 1 4 4 C 1.53006 * 109.47218 * 120.00000 * 2 1 3 5 5 C 1.52991 * 109.47199 * 64.99806 * 4 2 1 6 6 N 1.46492 * 109.47429 * 176.00430 * 5 4 2 7 7 C 1.46502 * 120.00530 * 264.91920 * 6 5 4 8 8 C 1.50694 * 109.47101 * 273.77053 * 7 6 5 9 9 H 1.08000 * 120.00270 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00121 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99742 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00414 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46782 * 60.00035 * 12 10 8 14 14 H 1.48495 * 109.47460 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46937 * 300.00465 * 12 10 8 16 16 C 1.34780 * 119.99976 * 84.91625 * 6 5 4 17 17 O 1.21276 * 120.00123 * 5.23918 * 16 6 5 18 18 C 1.50701 * 120.00018 * 185.23088 * 16 6 5 19 19 H 1.09002 * 110.86345 * 40.82852 * 18 16 6 20 20 C 1.54705 * 110.94828 * 277.08478 * 18 16 6 21 21 O 1.43765 * 102.79678 * 267.20692 * 20 18 16 22 22 C 1.36133 * 109.28670 * 332.45135 * 21 20 18 23 23 C 1.39292 * 129.88227 * 198.58558 * 22 21 20 24 24 C 1.37925 * 120.24797 * 180.42423 * 23 22 21 25 25 C 1.38291 * 120.35098 * 359.94254 * 24 23 22 26 26 C 1.38354 * 119.76065 * 359.83864 * 25 24 23 27 27 C 1.37736 * 119.98312 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.47191 * 300.00359 * 1 2 3 29 29 H 1.09000 * 109.47145 * 59.99567 * 1 2 3 30 30 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47626 * 239.99955 * 2 1 3 32 32 H 1.08994 * 109.47316 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46959 * 300.00430 * 3 2 1 34 34 H 1.09002 * 109.46821 * 59.99666 * 3 2 1 35 35 H 1.09008 * 109.46702 * 304.99979 * 4 2 1 36 36 H 1.08997 * 109.46959 * 185.00665 * 4 2 1 37 37 H 1.09001 * 109.47053 * 56.00357 * 5 4 2 38 38 H 1.09000 * 109.47387 * 296.00998 * 5 4 2 39 39 H 1.09009 * 109.46676 * 33.76583 * 7 6 5 40 40 H 1.08997 * 109.47523 * 153.76518 * 7 6 5 41 41 H 0.97003 * 120.00191 * 180.02562 * 11 10 8 42 42 H 1.08997 * 110.74840 * 148.87845 * 20 18 16 43 43 H 1.08997 * 110.90008 * 25.60526 * 20 18 16 44 44 H 1.08002 * 119.87642 * 0.43071 * 23 22 21 45 45 H 1.07997 * 119.82807 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.12115 * 179.81837 * 25 24 23 47 47 H 1.08002 * 120.00808 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 -2.1954 1.1881 6 7 2.2043 -2.9062 2.3357 7 6 3.4797 -3.6141 2.2000 8 6 3.2287 -5.0060 1.6797 9 1 2.2200 -5.3309 1.4714 10 6 4.2868 -5.8647 1.4697 11 7 5.5150 -5.4692 1.7238 12 14 3.9757 -7.5903 0.8255 13 1 3.3093 -7.5114 -0.4992 14 1 5.2685 -8.3079 0.6878 15 1 3.1019 -8.3235 1.7763 16 6 1.5545 -2.9088 3.5165 17 8 0.4550 -2.4046 3.6047 18 6 2.1941 -3.5383 4.7271 19 1 3.2570 -3.3008 4.7723 20 6 1.9684 -5.0687 4.7391 21 8 0.7701 -5.2078 5.5210 22 6 0.6775 -4.1650 6.3912 23 6 -0.0812 -4.0352 7.5522 24 6 -0.0296 -2.8705 8.2893 25 6 0.7758 -1.8221 7.8839 26 6 1.5360 -1.9447 6.7344 27 6 1.4881 -3.1079 5.9983 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6442 1.2952 37 1 2.0102 -2.6371 0.2648 38 1 0.5485 -2.2752 1.2137 39 1 4.1216 -3.0758 1.5025 40 1 3.9683 -3.6724 3.1726 41 1 6.2595 -6.0732 1.5757 42 1 2.8039 -5.5785 5.2189 43 1 1.8161 -5.4472 3.7284 44 1 -0.7121 -4.8496 7.8765 45 1 -0.6210 -2.7770 9.1881 46 1 0.8111 -0.9107 8.4622 47 1 2.1661 -1.1282 6.4138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113171491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:45 Heat of formation + Delta-G solvation = -57.301760 kcal Electronic energy + Delta-G solvation = -27472.616765 eV Core-core repulsion = 23813.212254 eV Total energy + Delta-G solvation = -3659.404511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08236 -38.82582 -37.08852 -36.50160 -34.80982 -32.66988 -32.43677 -29.92571 -29.55525 -28.50405 -27.07886 -26.98702 -24.14851 -23.14054 -22.91223 -21.96553 -21.33000 -19.78031 -18.55289 -17.11857 -16.77280 -16.44823 -16.14584 -15.74678 -15.21337 -15.10260 -14.87886 -14.43186 -14.21254 -13.76454 -13.56333 -13.33896 -13.10471 -12.92160 -12.69664 -12.45103 -12.26055 -12.22118 -12.09796 -11.71273 -11.61134 -11.46436 -11.15082 -11.09754 -10.97759 -10.81599 -10.78170 -10.69026 -10.52695 -10.48531 -10.28526 -10.05312 -9.79672 -9.18058 -8.70377 -8.58641 -7.85425 -7.75115 -6.27846 -4.36404 1.51457 1.63571 3.19009 3.22034 3.24709 3.29710 3.65830 3.72213 4.07639 4.26675 4.72084 4.96166 5.01885 5.04409 5.10911 5.12354 5.13531 5.21753 5.29908 5.48715 5.55626 5.63300 5.71372 5.79095 5.79572 5.82642 5.88603 5.97068 6.00383 6.03263 6.09887 6.14803 6.25729 6.31205 6.34570 6.38114 6.51682 6.60682 6.64236 6.65644 6.70315 6.72427 6.85536 7.07921 7.45642 7.50169 7.66523 7.94710 8.26356 8.68901 8.94160 9.32371 10.78227 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007591 B = 0.006091 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.782830 B = 4595.913807 C = 7517.075420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.121 3.879 6 N -0.594 5.594 7 C 0.234 3.766 8 C -0.543 4.543 9 H 0.062 0.938 10 C 0.069 3.931 11 N -0.888 5.888 12 Si 0.893 3.107 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.526 3.474 17 O -0.556 6.556 18 C -0.094 4.094 19 H 0.118 0.882 20 C 0.068 3.932 21 O -0.305 6.305 22 C 0.121 3.879 23 C -0.147 4.147 24 C -0.088 4.088 25 C -0.157 4.157 26 C -0.059 4.059 27 C -0.143 4.143 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.039 0.961 41 H 0.267 0.733 42 H 0.086 0.914 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 7.856 5.462 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.002 4.002 6 N -0.324 5.324 7 C 0.114 3.886 8 C -0.581 4.581 9 H 0.080 0.920 10 C -0.135 4.135 11 N -0.525 5.525 12 Si 0.720 3.280 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.313 3.687 17 O -0.436 6.436 18 C -0.115 4.115 19 H 0.136 0.864 20 C -0.006 4.006 21 O -0.219 6.219 22 C 0.075 3.925 23 C -0.166 4.166 24 C -0.106 4.106 25 C -0.175 4.175 26 C -0.078 4.078 27 C -0.145 4.145 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.609 7.847 5.427 11.068 hybrid contribution 0.337 -0.936 -0.593 1.158 sum -5.272 6.912 4.834 9.947 Atomic orbital electron populations 1.21871 0.95367 1.02055 1.01138 1.21053 0.95832 0.95902 0.98483 1.21820 1.00878 0.96209 1.01277 1.21994 1.00984 0.95980 0.97655 1.21339 0.98920 0.90649 0.89269 1.48207 1.24498 1.50640 1.09063 1.19502 0.79278 0.91499 0.98317 1.21429 0.93650 0.97555 1.45510 0.91984 1.24924 0.94851 0.98759 0.94943 1.69903 0.98544 1.36654 1.47417 0.86620 0.77656 0.83876 0.79819 1.20036 1.21067 1.19856 1.19922 0.85208 0.79448 0.84104 1.90616 1.20035 1.47699 1.85237 1.21466 1.01966 0.96809 0.91307 0.86381 1.23964 0.85532 0.93103 0.98041 1.86829 1.43024 1.44106 1.47904 1.19629 0.95280 0.87315 0.90274 1.20174 1.03303 0.99692 0.93453 1.20764 0.98286 0.92502 0.99055 1.20907 0.99313 0.99341 0.97966 1.20249 0.98135 0.95484 0.93885 1.20403 1.02064 0.95629 0.96372 0.92805 0.93270 0.92296 0.91141 0.92787 0.93042 0.92941 0.92039 0.91882 0.90318 0.91082 0.94560 0.94360 0.92319 0.89583 0.85146 0.85803 0.85616 0.85883 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 2 C -0.09 -1.22 2.92 -90.62 -0.26 -1.49 16 3 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 4 C -0.13 -2.00 4.97 -26.73 -0.13 -2.14 16 5 C 0.12 2.21 5.07 -4.05 -0.02 2.19 16 6 N -0.59 -12.13 2.47 -175.07 -0.43 -12.56 16 7 C 0.23 5.22 4.92 -5.20 -0.03 5.19 16 8 C -0.54 -13.20 7.78 -34.44 -0.27 -13.47 16 9 H 0.06 1.55 7.72 -52.49 -0.40 1.14 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -23.19 13.29 55.43 0.74 -22.45 16 12 Si 0.89 19.73 29.54 -169.99 -5.02 14.70 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 C 0.53 11.02 6.82 -10.98 -0.07 10.94 16 17 O -0.56 -12.92 15.86 5.56 0.09 -12.83 16 18 C -0.09 -1.78 2.54 -91.56 -0.23 -2.01 16 19 H 0.12 2.11 6.61 -51.93 -0.34 1.77 16 20 C 0.07 1.30 7.25 38.05 0.28 1.57 16 21 O -0.30 -5.97 11.10 -20.16 -0.22 -6.19 16 22 C 0.12 2.20 7.04 -38.95 -0.27 1.92 16 23 C -0.15 -2.23 10.06 -39.30 -0.40 -2.63 16 24 C -0.09 -1.14 10.02 -39.68 -0.40 -1.54 16 25 C -0.16 -2.08 10.07 -39.52 -0.40 -2.48 16 26 C -0.06 -0.92 10.03 -39.72 -0.40 -1.32 16 27 C -0.14 -2.58 4.98 -104.10 -0.52 -3.10 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.79 6.65 -51.93 -0.35 0.45 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 38 H 0.07 1.34 6.13 -51.93 -0.32 1.02 16 39 H 0.04 0.86 8.10 -51.92 -0.42 0.44 16 40 H 0.04 0.87 5.84 -51.93 -0.30 0.57 16 41 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.13 2.70 6.21 -51.93 -0.32 2.38 16 44 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 47 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -28.38 380.74 -9.17 -37.55 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.51 Total: 5.60 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.55 Total: -9.55 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.30 Total: -35.01 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.14 Total: -19.02 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.38 -9.17 -37.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113171491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.753 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds