Wall clock time and date at job start Tue Mar 31 2020 11:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47200 * 2 1 4 4 C 1.53006 * 109.47218 * 120.00000 * 2 1 3 5 5 C 1.52991 * 109.47199 * 64.99806 * 4 2 1 6 6 N 1.46492 * 109.47429 * 176.00430 * 5 4 2 7 7 C 1.46502 * 120.00530 * 264.91920 * 6 5 4 8 8 C 1.50694 * 109.47101 * 273.77053 * 7 6 5 9 9 H 1.08000 * 120.00270 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00121 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99742 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00414 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46782 * 60.00035 * 12 10 8 14 14 H 1.48495 * 109.47460 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46937 * 300.00465 * 12 10 8 16 16 C 1.34780 * 119.99976 * 84.91625 * 6 5 4 17 17 O 1.21276 * 120.00123 * 5.23918 * 16 6 5 18 18 C 1.50701 * 120.00018 * 185.23088 * 16 6 5 19 19 H 1.09002 * 110.86345 * 40.82852 * 18 16 6 20 20 C 1.54705 * 110.94828 * 277.08478 * 18 16 6 21 21 O 1.43765 * 102.79678 * 267.20692 * 20 18 16 22 22 C 1.36133 * 109.28670 * 332.45135 * 21 20 18 23 23 C 1.39292 * 129.88227 * 198.58558 * 22 21 20 24 24 C 1.37925 * 120.24797 * 180.42423 * 23 22 21 25 25 C 1.38291 * 120.35098 * 359.94254 * 24 23 22 26 26 C 1.38354 * 119.76065 * 359.83864 * 25 24 23 27 27 C 1.37736 * 119.98312 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.47191 * 300.00359 * 1 2 3 29 29 H 1.09000 * 109.47145 * 59.99567 * 1 2 3 30 30 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47626 * 239.99955 * 2 1 3 32 32 H 1.08994 * 109.47316 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46959 * 300.00430 * 3 2 1 34 34 H 1.09002 * 109.46821 * 59.99666 * 3 2 1 35 35 H 1.09008 * 109.46702 * 304.99979 * 4 2 1 36 36 H 1.08997 * 109.46959 * 185.00665 * 4 2 1 37 37 H 1.09001 * 109.47053 * 56.00357 * 5 4 2 38 38 H 1.09000 * 109.47387 * 296.00998 * 5 4 2 39 39 H 1.09009 * 109.46676 * 33.76583 * 7 6 5 40 40 H 1.08997 * 109.47523 * 153.76518 * 7 6 5 41 41 H 0.97003 * 120.00191 * 180.02562 * 11 10 8 42 42 H 1.08997 * 110.74840 * 148.87845 * 20 18 16 43 43 H 1.08997 * 110.90008 * 25.60526 * 20 18 16 44 44 H 1.08002 * 119.87642 * 0.43071 * 23 22 21 45 45 H 1.07997 * 119.82807 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.12115 * 179.81837 * 25 24 23 47 47 H 1.08002 * 120.00808 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 -2.1954 1.1881 6 7 2.2043 -2.9062 2.3357 7 6 3.4797 -3.6141 2.2000 8 6 3.2287 -5.0060 1.6797 9 1 2.2200 -5.3309 1.4714 10 6 4.2868 -5.8647 1.4697 11 7 5.5150 -5.4692 1.7238 12 14 3.9757 -7.5903 0.8255 13 1 3.3093 -7.5114 -0.4992 14 1 5.2685 -8.3079 0.6878 15 1 3.1019 -8.3235 1.7763 16 6 1.5545 -2.9088 3.5165 17 8 0.4550 -2.4046 3.6047 18 6 2.1941 -3.5383 4.7271 19 1 3.2570 -3.3008 4.7723 20 6 1.9684 -5.0687 4.7391 21 8 0.7701 -5.2078 5.5210 22 6 0.6775 -4.1650 6.3912 23 6 -0.0812 -4.0352 7.5522 24 6 -0.0296 -2.8705 8.2893 25 6 0.7758 -1.8221 7.8839 26 6 1.5360 -1.9447 6.7344 27 6 1.4881 -3.1079 5.9983 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6442 1.2952 37 1 2.0102 -2.6371 0.2648 38 1 0.5485 -2.2752 1.2137 39 1 4.1216 -3.0758 1.5025 40 1 3.9683 -3.6724 3.1726 41 1 6.2595 -6.0732 1.5757 42 1 2.8039 -5.5785 5.2189 43 1 1.8161 -5.4472 3.7284 44 1 -0.7121 -4.8496 7.8765 45 1 -0.6210 -2.7770 9.1881 46 1 0.8111 -0.9107 8.4622 47 1 2.1661 -1.1282 6.4138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113171491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:45 Heat of formation + Delta-G solvation = -70.665188 kcal Electronic energy + Delta-G solvation = -27473.196246 eV Core-core repulsion = 23813.212254 eV Total energy + Delta-G solvation = -3659.983993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47959 -40.39772 -38.31048 -37.81964 -36.45997 -34.50976 -33.84259 -31.17638 -30.84756 -29.90862 -28.81046 -28.02468 -25.58892 -24.99012 -24.22838 -23.22398 -22.61152 -20.92310 -20.14184 -18.71271 -18.44437 -17.98549 -17.57718 -17.24650 -16.67778 -16.36638 -16.22922 -16.08790 -15.68162 -15.00862 -14.79720 -14.55415 -14.44088 -14.39770 -14.19122 -13.86930 -13.82659 -13.49930 -13.43470 -13.14851 -12.88865 -12.78689 -12.74781 -12.58719 -12.51857 -12.29599 -12.14994 -11.99107 -11.98185 -11.70615 -11.58734 -11.56722 -11.44601 -10.83541 -10.58245 -9.83789 -9.49404 -9.10827 -8.22123 -6.36055 0.33391 0.44939 1.41592 1.43666 1.49469 1.59375 2.19162 2.31370 2.41123 2.82738 3.08518 3.34629 3.57831 3.65774 3.87870 3.93754 3.95709 4.05629 4.17022 4.22473 4.28880 4.40555 4.53734 4.54721 4.60437 4.64070 4.66012 4.70464 4.75638 4.79765 4.89109 4.94043 5.00294 5.06872 5.10616 5.12784 5.18210 5.30250 5.40005 5.44442 5.48118 5.49021 5.55142 5.64240 5.69873 5.81368 6.02543 6.22197 6.51069 6.76819 7.22907 7.37439 8.83025 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007591 B = 0.006091 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.782830 B = 4595.913807 C = 7517.075420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.115 4.115 5 C 0.119 3.881 6 N -0.595 5.595 7 C 0.249 3.751 8 C -0.545 4.545 9 H 0.051 0.949 10 C 0.032 3.968 11 N -0.913 5.913 12 Si 0.946 3.054 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.271 1.271 16 C 0.524 3.476 17 O -0.582 6.582 18 C -0.092 4.092 19 H 0.121 0.879 20 C 0.072 3.928 21 O -0.324 6.324 22 C 0.083 3.917 23 C -0.152 4.152 24 C -0.078 4.078 25 C -0.147 4.147 26 C -0.074 4.074 27 C -0.167 4.167 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.023 0.977 40 H 0.035 0.965 41 H 0.269 0.731 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.142 0.858 45 H 0.169 0.831 46 H 0.161 0.839 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 8.927 6.599 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.154 4.154 5 C -0.004 4.004 6 N -0.325 5.325 7 C 0.129 3.871 8 C -0.583 4.583 9 H 0.069 0.931 10 C -0.169 4.169 11 N -0.552 5.552 12 Si 0.771 3.229 13 H -0.200 1.200 14 H -0.206 1.206 15 H -0.197 1.197 16 C 0.312 3.688 17 O -0.463 6.463 18 C -0.113 4.113 19 H 0.139 0.861 20 C -0.003 4.003 21 O -0.238 6.238 22 C 0.038 3.962 23 C -0.170 4.170 24 C -0.096 4.096 25 C -0.164 4.164 26 C -0.092 4.092 27 C -0.168 4.168 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.160 0.840 45 H 0.187 0.813 46 H 0.179 0.821 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.311 8.928 6.559 12.750 hybrid contribution 0.490 -1.209 -0.871 1.568 sum -5.821 7.720 5.688 11.218 Atomic orbital electron populations 1.21844 0.94971 1.01414 1.01928 1.21059 0.96143 0.96884 0.96947 1.21784 1.00983 0.94801 1.02205 1.21876 1.00584 0.94220 0.98700 1.21464 0.98287 0.92173 0.88441 1.48244 1.23910 1.50554 1.09755 1.19197 0.79750 0.90686 0.97512 1.21524 0.93103 0.98448 1.45250 0.93078 1.25500 0.94642 1.01637 0.95136 1.69977 0.99114 1.37731 1.48367 0.85791 0.77556 0.80359 0.79164 1.19967 1.20608 1.19653 1.20288 0.84883 0.78969 0.84636 1.90581 1.21094 1.48956 1.85691 1.21406 1.02044 0.96593 0.91284 0.86121 1.23805 0.86068 0.93306 0.97094 1.86765 1.43215 1.45139 1.48729 1.20054 0.97303 0.87156 0.91672 1.20612 1.02672 1.01264 0.92489 1.21300 0.97585 0.91065 0.99645 1.21401 0.97505 1.00718 0.96813 1.20581 0.98998 0.94958 0.94705 1.20488 1.03039 0.96942 0.96356 0.93406 0.91048 0.93668 0.90714 0.92632 0.91164 0.92966 0.93348 0.92281 0.90533 0.91916 0.95899 0.94711 0.92199 0.88392 0.87467 0.84047 0.81317 0.82146 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.95 71.98 0.64 -2.90 16 2 C -0.09 -2.32 2.92 -10.79 -0.03 -2.35 16 3 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 4 C -0.12 -3.67 4.97 30.59 0.15 -3.52 16 5 C 0.12 4.48 5.07 86.38 0.44 4.92 16 6 N -0.60 -25.25 2.47 -826.19 -2.04 -27.28 16 7 C 0.25 11.49 4.92 85.63 0.42 11.91 16 8 C -0.54 -27.16 7.78 25.60 0.20 -26.96 16 9 H 0.05 2.63 7.72 -2.91 -0.02 2.61 16 10 C 0.03 1.63 5.46 84.66 0.46 2.09 16 11 N -0.91 -48.16 13.29 21.45 0.28 -47.87 16 12 Si 0.95 40.68 29.54 68.60 2.03 42.70 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 16 C 0.52 22.76 6.82 87.66 0.60 23.36 16 17 O -0.58 -27.86 15.86 -3.02 -0.05 -27.90 16 18 C -0.09 -3.61 2.54 -11.40 -0.03 -3.64 16 19 H 0.12 4.51 6.61 -2.39 -0.02 4.49 16 20 C 0.07 2.86 7.25 72.56 0.53 3.39 16 21 O -0.32 -13.10 11.10 -95.06 -1.06 -14.16 16 22 C 0.08 3.03 7.04 22.68 0.16 3.19 16 23 C -0.15 -4.32 10.06 22.45 0.23 -4.10 16 24 C -0.08 -1.74 10.02 22.21 0.22 -1.52 16 25 C -0.15 -3.40 10.07 22.31 0.22 -3.17 16 26 C -0.07 -2.22 10.03 22.18 0.22 -2.00 16 27 C -0.17 -6.04 4.98 -19.53 -0.10 -6.14 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.22 6.65 -2.39 -0.02 1.20 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.88 8.03 -2.39 -0.02 2.86 16 38 H 0.06 2.46 6.13 -2.39 -0.01 2.45 16 39 H 0.02 1.12 8.10 -2.38 -0.02 1.10 16 40 H 0.04 1.64 5.84 -2.39 -0.01 1.62 16 41 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 42 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 43 H 0.11 4.69 6.21 -2.39 -0.01 4.67 16 44 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 45 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 46 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 47 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -62.06 380.74 5.12 -56.94 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.95 Total: 27.32 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.00 Total: -9.74 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.75 Total: -75.16 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.10 Total: -42.06 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Total: -62.06 5.12 -56.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113171491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.725 kcal (2) G-P(sol) polarization free energy of solvation -62.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds