Wall clock time and date at job start Tue Mar 31 2020 11:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47586 * 2 1 4 4 C 1.53001 * 109.47199 * 120.00190 * 2 1 3 5 5 C 1.53004 * 109.47189 * 64.99379 * 4 2 1 6 6 N 1.46494 * 109.47422 * 180.02562 * 5 4 2 7 7 C 1.46505 * 119.99913 * 270.00543 * 6 5 4 8 8 C 1.50700 * 109.46754 * 274.37956 * 7 6 5 9 9 H 1.07998 * 120.00261 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99879 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99622 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00020 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46919 * 90.00587 * 12 10 8 14 14 H 1.48502 * 109.46978 * 210.00265 * 12 10 8 15 15 H 1.48500 * 109.46999 * 330.00080 * 12 10 8 16 16 C 1.34774 * 120.00128 * 89.99848 * 6 5 4 17 17 O 1.21278 * 119.99888 * 4.66233 * 16 6 5 18 18 C 1.50699 * 119.99851 * 184.65336 * 16 6 5 19 19 H 1.09000 * 110.83946 * 328.60224 * 18 16 6 20 20 C 1.54712 * 110.96803 * 92.33484 * 18 16 6 21 21 O 1.43779 * 102.78477 * 143.45278 * 20 18 16 22 22 C 1.36129 * 109.24159 * 332.25850 * 21 20 18 23 23 C 1.39283 * 129.88734 * 198.37281 * 22 21 20 24 24 C 1.37931 * 120.23845 * 180.96955 * 23 22 21 25 25 C 1.38287 * 120.35522 * 0.04411 * 24 23 22 26 26 C 1.38352 * 119.76419 * 359.81126 * 25 24 23 27 27 C 1.37743 * 119.97783 * 0.02562 * 26 25 24 28 28 H 1.09008 * 109.46881 * 299.99905 * 1 2 3 29 29 H 1.08998 * 109.47028 * 59.99664 * 1 2 3 30 30 H 1.08998 * 109.47432 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46678 * 239.99769 * 2 1 3 32 32 H 1.08993 * 109.47353 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46892 * 300.00388 * 3 2 1 34 34 H 1.09005 * 109.46805 * 59.99611 * 3 2 1 35 35 H 1.08997 * 109.47106 * 304.99966 * 4 2 1 36 36 H 1.08996 * 109.47558 * 184.99420 * 4 2 1 37 37 H 1.09006 * 109.47124 * 59.99947 * 5 4 2 38 38 H 1.09002 * 109.47441 * 300.00838 * 5 4 2 39 39 H 1.09004 * 109.47341 * 34.37979 * 7 6 5 40 40 H 1.09001 * 109.47202 * 154.38399 * 7 6 5 41 41 H 0.97013 * 119.99835 * 179.97438 * 11 10 8 42 42 H 1.09001 * 110.74938 * 261.77913 * 20 18 16 43 43 H 1.09002 * 110.74970 * 25.12997 * 20 18 16 44 44 H 1.07998 * 119.88529 * 0.97255 * 23 22 21 45 45 H 1.08002 * 119.82573 * 180.02562 * 24 23 22 46 46 H 1.08006 * 120.12037 * 179.78538 * 25 24 23 47 47 H 1.07998 * 120.01061 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1880 6 7 2.1229 -2.8861 2.3844 7 6 3.4512 -3.5041 2.3830 8 6 3.3573 -4.8951 1.8108 9 1 2.4037 -5.2801 1.4808 10 6 4.4890 -5.6760 1.7077 11 7 5.6502 -5.2070 2.1091 12 14 4.3728 -7.3999 0.9978 13 1 4.5785 -7.3449 -0.4719 14 1 5.4166 -8.2595 1.6118 15 1 3.0311 -7.9658 1.2892 16 6 1.3498 -2.9526 3.4863 17 8 0.2188 -2.5157 3.4608 18 6 1.8908 -3.5702 4.7500 19 1 2.6062 -4.3599 4.5203 20 6 2.5278 -2.4956 5.6627 21 8 2.1771 -2.9495 6.9812 22 6 1.0194 -3.6629 6.9169 23 6 0.1221 -4.0022 7.9267 24 6 -0.9940 -4.7595 7.6385 25 6 -1.2321 -5.1895 6.3459 26 6 -0.3473 -4.8542 5.3366 27 6 0.7663 -4.0951 5.6215 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6445 1.2951 37 1 2.0697 -2.6551 0.3002 38 1 0.5488 -2.2724 1.1420 39 1 4.1297 -2.9060 1.7746 40 1 3.8288 -3.5561 3.4042 41 1 6.4465 -5.7565 2.0368 42 1 3.6103 -2.4744 5.5368 43 1 2.0955 -1.5149 5.4643 44 1 0.3009 -3.6711 8.9390 45 1 -1.6856 -5.0185 8.4266 46 1 -2.1055 -5.7853 6.1251 47 1 -0.5291 -5.1882 4.3258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113171494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:49 Heat of formation + Delta-G solvation = -57.871207 kcal Electronic energy + Delta-G solvation = -27334.992284 eV Core-core repulsion = 23675.563080 eV Total energy + Delta-G solvation = -3659.429204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12132 -38.93190 -37.15660 -36.57393 -34.82077 -32.65737 -32.45982 -29.93551 -29.55456 -28.68744 -27.06619 -27.00250 -24.20098 -23.24480 -22.90777 -22.00264 -21.36902 -19.79639 -18.36522 -17.27083 -16.86577 -16.64690 -16.26243 -15.51148 -15.47489 -15.07801 -14.83033 -14.42612 -14.17227 -13.92707 -13.53675 -13.34202 -13.20682 -12.86818 -12.78934 -12.47612 -12.39791 -12.24582 -12.12217 -11.93030 -11.59216 -11.43821 -11.38346 -11.05938 -11.00945 -10.83427 -10.76383 -10.64607 -10.54349 -10.50923 -10.30373 -10.06642 -9.79250 -9.19269 -8.67188 -8.58618 -7.92050 -7.78617 -6.25679 -4.33646 1.52413 1.61652 3.15117 3.18703 3.26595 3.30513 3.45072 3.72376 4.05345 4.28375 4.69909 4.87540 4.98617 5.07341 5.08261 5.10564 5.14101 5.20946 5.23209 5.39680 5.55269 5.58866 5.68058 5.69827 5.73083 5.80172 5.85699 5.86847 5.96024 5.98535 6.07853 6.09713 6.22745 6.27200 6.31146 6.36494 6.50010 6.58344 6.63289 6.64189 6.69031 6.73898 6.79492 7.06324 7.38808 7.44615 7.68995 7.96176 8.23158 8.70059 8.89506 9.35165 10.80913 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007577 B = 0.005705 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3694.314015 B = 4906.961216 C = 7325.854517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.127 4.127 5 C 0.118 3.882 6 N -0.591 5.591 7 C 0.234 3.766 8 C -0.541 4.541 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.528 3.472 17 O -0.560 6.560 18 C -0.104 4.104 19 H 0.135 0.865 20 C 0.071 3.929 21 O -0.303 6.303 22 C 0.104 3.896 23 C -0.144 4.144 24 C -0.091 4.091 25 C -0.152 4.152 26 C -0.050 4.050 27 C -0.134 4.134 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.266 0.734 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.124 0.876 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.780 6.277 3.746 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.321 5.321 7 C 0.114 3.886 8 C -0.580 4.580 9 H 0.080 0.920 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.314 3.686 17 O -0.440 6.440 18 C -0.125 4.125 19 H 0.153 0.847 20 C -0.004 4.004 21 O -0.217 6.217 22 C 0.059 3.941 23 C -0.163 4.163 24 C -0.109 4.109 25 C -0.170 4.170 26 C -0.068 4.068 27 C -0.135 4.135 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.988 6.517 3.913 11.027 hybrid contribution 0.298 -1.077 -0.721 1.330 sum -7.689 5.440 3.192 9.945 Atomic orbital electron populations 1.21876 0.95355 1.02063 1.01139 1.21046 0.95824 0.95915 0.98492 1.21822 1.00920 0.96177 1.01289 1.21994 1.01109 0.95880 0.97610 1.21376 0.99961 0.90939 0.88207 1.48229 1.19391 1.52961 1.11514 1.19502 0.77578 0.93005 0.98473 1.21477 0.94745 0.98972 1.42801 0.92047 1.24934 0.95070 0.98631 0.95043 1.69911 0.98966 1.37507 1.46389 0.86517 0.78071 0.83796 0.79287 1.20443 1.20964 1.19724 1.19848 0.85234 0.78963 0.84512 1.90614 1.18761 1.49955 1.84654 1.21631 0.97264 0.99925 0.93717 0.84697 1.23722 1.01811 0.96519 0.78353 1.86802 1.36278 1.67682 1.30894 1.19565 0.86927 0.93152 0.94443 1.20138 0.94170 1.03935 0.98034 1.20775 0.96284 0.97107 0.96781 1.20973 1.00335 1.02906 0.92784 1.20312 0.91905 0.95086 0.99494 1.20355 0.97398 1.02036 0.93716 0.92818 0.93271 0.92265 0.91130 0.92743 0.93042 0.92930 0.92165 0.91743 0.90395 0.90728 0.94459 0.94368 0.92408 0.86602 0.90524 0.85758 0.85536 0.85774 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 37.16 0.33 -1.48 16 2 C -0.09 -1.19 2.92 -90.62 -0.26 -1.46 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C -0.13 -1.94 5.01 -26.73 -0.13 -2.08 16 5 C 0.12 2.11 5.22 -4.04 -0.02 2.09 16 6 N -0.59 -11.92 2.46 -175.05 -0.43 -12.35 16 7 C 0.23 5.28 4.84 -5.19 -0.03 5.26 16 8 C -0.54 -13.67 9.36 -34.44 -0.32 -13.99 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -23.84 13.29 55.43 0.74 -23.11 16 12 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 C 0.53 10.71 6.71 -10.99 -0.07 10.64 16 17 O -0.56 -12.32 15.64 5.56 0.09 -12.23 16 18 C -0.10 -1.97 2.54 -91.56 -0.23 -2.21 16 19 H 0.14 2.76 6.49 -51.93 -0.34 2.42 16 20 C 0.07 1.18 7.47 38.06 0.28 1.46 16 21 O -0.30 -5.25 11.10 -20.15 -0.22 -5.47 16 22 C 0.10 1.80 7.04 -38.95 -0.27 1.53 16 23 C -0.14 -2.09 10.06 -39.31 -0.40 -2.49 16 24 C -0.09 -1.19 10.02 -39.68 -0.40 -1.58 16 25 C -0.15 -2.14 10.07 -39.52 -0.40 -2.54 16 26 C -0.05 -0.85 9.60 -39.72 -0.38 -1.23 16 27 C -0.13 -2.46 5.25 -104.10 -0.55 -3.01 16 28 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 38 H 0.07 1.36 5.78 -51.93 -0.30 1.06 16 39 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.04 0.87 6.04 -51.93 -0.31 0.56 16 41 H 0.27 6.82 8.31 -40.81 -0.34 6.48 16 42 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.08 1.22 7.91 -51.93 -0.41 0.81 16 44 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 47 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -28.61 383.64 -9.26 -37.87 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.58 Total: 5.00 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.61 Total: -10.73 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.31 Total: -35.45 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.14 Total: -17.71 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.61 -9.26 -37.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113171494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.004 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds