Wall clock time and date at job start Tue Mar 31 2020 11:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47586 * 2 1 4 4 C 1.53001 * 109.47199 * 120.00190 * 2 1 3 5 5 C 1.53004 * 109.47189 * 64.99379 * 4 2 1 6 6 N 1.46494 * 109.47422 * 180.02562 * 5 4 2 7 7 C 1.46505 * 119.99913 * 270.00543 * 6 5 4 8 8 C 1.50700 * 109.46754 * 274.37956 * 7 6 5 9 9 H 1.07998 * 120.00261 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99879 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99622 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00020 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46919 * 90.00587 * 12 10 8 14 14 H 1.48502 * 109.46978 * 210.00265 * 12 10 8 15 15 H 1.48500 * 109.46999 * 330.00080 * 12 10 8 16 16 C 1.34774 * 120.00128 * 89.99848 * 6 5 4 17 17 O 1.21278 * 119.99888 * 4.66233 * 16 6 5 18 18 C 1.50699 * 119.99851 * 184.65336 * 16 6 5 19 19 H 1.09000 * 110.83946 * 328.60224 * 18 16 6 20 20 C 1.54712 * 110.96803 * 92.33484 * 18 16 6 21 21 O 1.43779 * 102.78477 * 143.45278 * 20 18 16 22 22 C 1.36129 * 109.24159 * 332.25850 * 21 20 18 23 23 C 1.39283 * 129.88734 * 198.37281 * 22 21 20 24 24 C 1.37931 * 120.23845 * 180.96955 * 23 22 21 25 25 C 1.38287 * 120.35522 * 0.04411 * 24 23 22 26 26 C 1.38352 * 119.76419 * 359.81126 * 25 24 23 27 27 C 1.37743 * 119.97783 * 0.02562 * 26 25 24 28 28 H 1.09008 * 109.46881 * 299.99905 * 1 2 3 29 29 H 1.08998 * 109.47028 * 59.99664 * 1 2 3 30 30 H 1.08998 * 109.47432 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46678 * 239.99769 * 2 1 3 32 32 H 1.08993 * 109.47353 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46892 * 300.00388 * 3 2 1 34 34 H 1.09005 * 109.46805 * 59.99611 * 3 2 1 35 35 H 1.08997 * 109.47106 * 304.99966 * 4 2 1 36 36 H 1.08996 * 109.47558 * 184.99420 * 4 2 1 37 37 H 1.09006 * 109.47124 * 59.99947 * 5 4 2 38 38 H 1.09002 * 109.47441 * 300.00838 * 5 4 2 39 39 H 1.09004 * 109.47341 * 34.37979 * 7 6 5 40 40 H 1.09001 * 109.47202 * 154.38399 * 7 6 5 41 41 H 0.97013 * 119.99835 * 179.97438 * 11 10 8 42 42 H 1.09001 * 110.74938 * 261.77913 * 20 18 16 43 43 H 1.09002 * 110.74970 * 25.12997 * 20 18 16 44 44 H 1.07998 * 119.88529 * 0.97255 * 23 22 21 45 45 H 1.08002 * 119.82573 * 180.02562 * 24 23 22 46 46 H 1.08006 * 120.12037 * 179.78538 * 25 24 23 47 47 H 1.07998 * 120.01061 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1880 6 7 2.1229 -2.8861 2.3844 7 6 3.4512 -3.5041 2.3830 8 6 3.3573 -4.8951 1.8108 9 1 2.4037 -5.2801 1.4808 10 6 4.4890 -5.6760 1.7077 11 7 5.6502 -5.2070 2.1091 12 14 4.3728 -7.3999 0.9978 13 1 4.5785 -7.3449 -0.4719 14 1 5.4166 -8.2595 1.6118 15 1 3.0311 -7.9658 1.2892 16 6 1.3498 -2.9526 3.4863 17 8 0.2188 -2.5157 3.4608 18 6 1.8908 -3.5702 4.7500 19 1 2.6062 -4.3599 4.5203 20 6 2.5278 -2.4956 5.6627 21 8 2.1771 -2.9495 6.9812 22 6 1.0194 -3.6629 6.9169 23 6 0.1221 -4.0022 7.9267 24 6 -0.9940 -4.7595 7.6385 25 6 -1.2321 -5.1895 6.3459 26 6 -0.3473 -4.8542 5.3366 27 6 0.7663 -4.0951 5.6215 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6445 1.2951 37 1 2.0697 -2.6551 0.3002 38 1 0.5488 -2.2724 1.1420 39 1 4.1297 -2.9060 1.7746 40 1 3.8288 -3.5561 3.4042 41 1 6.4465 -5.7565 2.0368 42 1 3.6103 -2.4744 5.5368 43 1 2.0955 -1.5149 5.4643 44 1 0.3009 -3.6711 8.9390 45 1 -1.6856 -5.0185 8.4266 46 1 -2.1055 -5.7853 6.1251 47 1 -0.5291 -5.1882 4.3258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113171494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:48 Heat of formation + Delta-G solvation = -71.292447 kcal Electronic energy + Delta-G solvation = -27335.574273 eV Core-core repulsion = 23675.563080 eV Total energy + Delta-G solvation = -3660.011193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.46852 -40.48758 -38.35893 -37.85789 -36.45131 -34.53077 -33.85412 -31.18176 -30.84115 -30.08272 -28.80054 -28.02216 -25.57972 -25.04291 -24.26274 -23.26443 -22.66760 -20.91319 -19.94844 -18.73543 -18.56983 -18.21267 -17.70062 -17.01534 -16.75935 -16.50377 -16.16653 -16.04680 -15.63533 -15.12983 -14.71622 -14.58276 -14.53526 -14.39355 -14.13493 -14.04920 -13.77597 -13.65967 -13.48797 -13.14864 -13.00701 -12.85522 -12.74498 -12.64940 -12.56751 -12.28059 -12.12636 -11.97996 -11.92033 -11.76084 -11.60690 -11.55226 -11.43277 -10.86113 -10.60883 -9.84930 -9.51285 -9.15808 -8.25185 -6.39689 0.31832 0.40683 1.37500 1.39762 1.48017 1.55336 2.12177 2.24445 2.39097 2.79991 3.05525 3.32396 3.52246 3.62099 3.88827 3.93510 3.94836 4.05082 4.05943 4.21351 4.30386 4.38289 4.46147 4.50735 4.54689 4.58285 4.67063 4.67837 4.74866 4.79947 4.87848 4.94092 5.01050 5.03883 5.10649 5.12731 5.15804 5.30911 5.35422 5.45395 5.45423 5.48715 5.54546 5.60520 5.62406 5.79487 6.00056 6.16696 6.48409 6.73891 7.19860 7.34214 8.80182 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007577 B = 0.005705 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3694.314015 B = 4906.961216 C = 7325.854517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.116 4.116 5 C 0.116 3.884 6 N -0.593 5.593 7 C 0.250 3.750 8 C -0.551 4.551 9 H 0.049 0.951 10 C 0.026 3.974 11 N -0.915 5.915 12 Si 0.952 3.048 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.274 1.274 16 C 0.528 3.472 17 O -0.578 6.578 18 C -0.104 4.104 19 H 0.111 0.889 20 C 0.077 3.923 21 O -0.309 6.309 22 C 0.080 3.920 23 C -0.142 4.142 24 C -0.078 4.078 25 C -0.146 4.146 26 C -0.075 4.075 27 C -0.165 4.165 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.026 0.974 40 H 0.034 0.966 41 H 0.269 0.731 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.152 0.848 45 H 0.173 0.827 46 H 0.155 0.845 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 6.230 4.566 11.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.155 4.155 5 C -0.006 4.006 6 N -0.323 5.323 7 C 0.129 3.871 8 C -0.590 4.590 9 H 0.067 0.933 10 C -0.175 4.175 11 N -0.554 5.554 12 Si 0.777 3.223 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.199 1.199 16 C 0.316 3.684 17 O -0.460 6.460 18 C -0.125 4.125 19 H 0.129 0.871 20 C 0.002 3.998 21 O -0.223 6.223 22 C 0.035 3.965 23 C -0.160 4.160 24 C -0.096 4.096 25 C -0.164 4.164 26 C -0.094 4.094 27 C -0.167 4.167 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.146 0.854 43 H 0.099 0.901 44 H 0.170 0.830 45 H 0.190 0.810 46 H 0.173 0.827 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.235 6.478 4.723 12.229 hybrid contribution 0.593 -1.091 -0.942 1.558 sum -8.642 5.388 3.781 10.863 Atomic orbital electron populations 1.21846 0.94935 1.01439 1.01915 1.21050 0.96148 0.96839 0.97001 1.21787 1.00990 0.94839 1.02204 1.21888 1.00704 0.94117 0.98748 1.21505 0.99529 0.92433 0.87154 1.48236 1.18637 1.53029 1.12365 1.19165 0.78414 0.91847 0.97650 1.21650 0.94265 1.00229 1.42827 0.93285 1.25589 0.94785 1.01816 0.95335 1.69986 0.99454 1.38734 1.47224 0.85641 0.77850 0.79893 0.78872 1.19714 1.20431 1.19913 1.20094 0.84885 0.78502 0.84899 1.90585 1.19419 1.50943 1.85027 1.21538 0.97504 0.99841 0.93641 0.87148 1.23723 1.02373 0.95864 0.77858 1.86767 1.36800 1.67982 1.30750 1.19929 0.87583 0.94081 0.94881 1.20632 0.93626 1.03146 0.98610 1.21312 0.95975 0.95007 0.97296 1.21373 1.00238 1.02208 0.92585 1.20458 0.92839 0.96129 0.99933 1.20481 0.98096 1.03810 0.94285 0.93383 0.91117 0.93592 0.90744 0.92645 0.91222 0.92925 0.93159 0.92213 0.90875 0.91211 0.95630 0.94791 0.92185 0.85383 0.90103 0.83038 0.80981 0.82750 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.95 71.98 0.64 -2.81 16 2 C -0.09 -2.27 2.92 -10.79 -0.03 -2.30 16 3 C -0.14 -2.93 9.19 71.98 0.66 -2.26 16 4 C -0.12 -3.61 5.01 30.60 0.15 -3.46 16 5 C 0.12 4.30 5.22 86.38 0.45 4.75 16 6 N -0.59 -24.98 2.46 -826.14 -2.03 -27.01 16 7 C 0.25 11.74 4.84 85.63 0.41 12.15 16 8 C -0.55 -28.66 9.36 25.60 0.24 -28.42 16 9 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 10 C 0.03 1.35 5.46 84.66 0.46 1.81 16 11 N -0.92 -49.68 13.29 21.45 0.28 -49.39 16 12 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.53 22.42 6.71 87.66 0.59 23.00 16 17 O -0.58 -26.36 15.64 -3.02 -0.05 -26.41 16 18 C -0.10 -4.12 2.54 -11.40 -0.03 -4.15 16 19 H 0.11 4.83 6.49 -2.39 -0.02 4.81 16 20 C 0.08 2.63 7.47 72.57 0.54 3.17 16 21 O -0.31 -10.75 11.10 -95.02 -1.06 -11.81 16 22 C 0.08 2.74 7.04 22.68 0.16 2.90 16 23 C -0.14 -3.76 10.06 22.45 0.23 -3.53 16 24 C -0.08 -1.75 10.02 22.21 0.22 -1.53 16 25 C -0.15 -3.80 10.07 22.31 0.22 -3.58 16 26 C -0.08 -2.60 9.60 22.18 0.21 -2.39 16 27 C -0.17 -6.23 5.25 -19.53 -0.10 -6.34 16 28 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.21 6.56 -2.39 -0.02 1.19 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.74 8.07 -2.38 -0.02 2.72 16 38 H 0.07 2.64 5.78 -2.39 -0.01 2.63 16 39 H 0.03 1.26 8.11 -2.39 -0.02 1.24 16 40 H 0.03 1.63 6.04 -2.39 -0.01 1.62 16 41 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 42 H 0.13 3.94 8.14 -2.39 -0.02 3.92 16 43 H 0.08 2.65 7.91 -2.39 -0.02 2.63 16 44 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 46 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 47 H 0.11 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -62.51 383.64 5.16 -57.35 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.94 Total: 26.38 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.04 Total: -12.98 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.74 Total: -76.40 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.10 Total: -38.22 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -62.51 5.16 -57.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113171494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.943 kcal (2) G-P(sol) polarization free energy of solvation -62.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds