Wall clock time and date at job start Tue Mar 31 2020 11:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47350 * 2 1 4 4 C 1.53001 * 109.47075 * 239.99681 * 2 1 3 5 5 C 1.53001 * 109.46973 * 120.00170 * 2 1 3 6 6 N 1.46504 * 109.47434 * 54.73861 * 5 2 1 7 7 C 1.46500 * 119.99742 * 270.38379 * 6 5 2 8 8 C 1.50699 * 109.47047 * 268.36021 * 7 6 5 9 9 H 1.07992 * 120.00108 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99738 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99777 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99825 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47141 * 89.99816 * 12 10 8 14 14 H 1.48502 * 109.46852 * 209.99182 * 12 10 8 15 15 H 1.48496 * 109.47272 * 329.99687 * 12 10 8 16 16 C 1.34777 * 119.99691 * 90.38319 * 6 5 2 17 17 O 1.21277 * 120.00009 * 3.57467 * 16 6 5 18 18 C 1.50700 * 119.99599 * 183.56982 * 16 6 5 19 19 H 1.08995 * 110.85461 * 319.81787 * 18 16 6 20 20 C 1.54710 * 110.93180 * 83.53409 * 18 16 6 21 21 O 1.43784 * 102.77333 * 143.39184 * 20 18 16 22 22 C 1.36138 * 109.19864 * 332.10096 * 21 20 18 23 23 C 1.39282 * 129.89344 * 198.82459 * 22 21 20 24 24 C 1.37940 * 120.23994 * 180.96483 * 23 22 21 25 25 C 1.38284 * 120.34694 * 359.95893 * 24 23 22 26 26 C 1.38357 * 119.76829 * 359.85268 * 25 24 23 27 27 C 1.37740 * 119.98052 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.46960 * 299.99998 * 1 2 3 29 29 H 1.08997 * 109.46808 * 59.99985 * 1 2 3 30 30 H 1.09000 * 109.46661 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46868 * 300.00082 * 3 2 1 33 33 H 1.09006 * 109.46686 * 59.99602 * 3 2 1 34 34 H 1.08994 * 109.47600 * 305.95453 * 4 2 1 35 35 H 1.08999 * 109.46871 * 65.95386 * 4 2 1 36 36 H 1.09003 * 109.46800 * 185.95139 * 4 2 1 37 37 H 1.09003 * 109.46808 * 294.73579 * 5 2 1 38 38 H 1.09007 * 109.47103 * 174.74201 * 5 2 1 39 39 H 1.08993 * 109.47117 * 28.35983 * 7 6 5 40 40 H 1.09004 * 109.46814 * 148.35753 * 7 6 5 41 41 H 0.97006 * 119.99638 * 180.02562 * 11 10 8 42 42 H 1.09006 * 110.74889 * 25.07187 * 20 18 16 43 43 H 1.08999 * 110.91196 * 261.78461 * 20 18 16 44 44 H 1.07999 * 119.87991 * 0.93891 * 23 22 21 45 45 H 1.07993 * 119.82552 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.11387 * 179.83482 * 25 24 23 47 47 H 1.08003 * 120.00623 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.4510 -2.0611 1.3143 7 6 0.1756 -2.2678 2.0048 8 6 0.4365 -2.6257 3.4452 9 1 1.4508 -2.6930 3.8097 10 6 -0.6198 -2.8684 4.2975 11 7 -1.8551 -2.7870 3.8534 12 14 -0.2964 -3.3127 6.0828 13 1 -0.2449 -2.0737 6.8998 14 1 -1.3875 -4.1886 6.5803 15 1 1.0002 -4.0290 6.1876 16 6 2.0825 -3.1035 0.7388 17 8 3.1689 -2.9449 0.2236 18 6 1.4386 -4.4660 0.7355 19 1 0.9516 -4.6673 1.6896 20 6 0.4370 -4.6012 -0.4358 21 8 0.6077 -5.9694 -0.8437 22 6 1.8748 -6.3699 -0.5481 23 6 2.6115 -7.4424 -1.0451 24 6 3.8905 -7.6789 -0.5857 25 6 4.4530 -6.8539 0.3710 26 6 3.7292 -5.7841 0.8669 27 6 2.4532 -5.5440 0.4069 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.5923 -1.7135 -1.3041 35 1 1.7663 -0.1497 -2.1360 36 1 3.1248 -0.8145 -1.1975 37 1 1.7556 -0.1559 2.1367 38 1 3.1260 -0.8036 1.2034 39 1 -0.4148 -1.3528 1.9590 40 1 -0.3716 -3.0778 1.5225 41 1 -2.5982 -2.9574 4.4531 42 1 0.6972 -3.9210 -1.2469 43 1 -0.5837 -4.4236 -0.0973 44 1 2.1797 -8.0914 -1.7926 45 1 4.4555 -8.5127 -0.9753 46 1 5.4536 -7.0442 0.7299 47 1 4.1646 -5.1375 1.6144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113173400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:56 Heat of formation + Delta-G solvation = -50.918160 kcal Electronic energy + Delta-G solvation = -28220.862247 eV Core-core repulsion = 24561.734550 eV Total energy + Delta-G solvation = -3659.127697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12932 -39.24380 -37.14284 -36.71751 -34.44490 -32.45531 -32.31013 -29.83494 -29.15664 -27.79301 -26.99583 -26.77734 -25.79701 -23.66865 -22.86777 -22.09720 -21.61099 -18.98702 -18.07954 -17.23954 -16.84004 -16.64413 -16.27149 -15.46600 -15.35987 -14.92788 -14.82627 -14.34725 -13.89811 -13.85840 -13.49046 -13.28067 -13.12790 -12.81238 -12.62299 -12.41426 -12.37215 -12.13673 -11.86461 -11.85452 -11.41956 -11.38926 -11.32561 -11.11150 -10.98972 -10.87935 -10.65929 -10.58894 -10.53201 -10.42299 -10.28465 -10.11588 -9.74886 -9.11991 -8.64346 -8.59008 -7.90437 -7.73936 -6.25232 -4.33051 1.53654 1.63076 3.18684 3.20213 3.26783 3.31070 3.47885 3.75589 4.07664 4.28775 4.71557 4.90324 5.07199 5.08754 5.14527 5.16219 5.19660 5.22353 5.34494 5.42647 5.56843 5.69401 5.72431 5.82465 5.85921 5.87914 5.89807 6.07127 6.13162 6.15430 6.16849 6.26375 6.30636 6.33463 6.45253 6.51020 6.51447 6.62390 6.65465 6.71949 6.75782 6.79563 6.81782 7.08291 7.40836 7.47378 7.70149 7.98463 8.25020 8.71762 8.93286 9.35712 10.80990 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.006118 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.555247 B = 4575.805053 C = 6459.213189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.128 4.128 5 C 0.130 3.870 6 N -0.588 5.588 7 C 0.231 3.769 8 C -0.542 4.542 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.889 5.889 12 Si 0.895 3.105 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.529 3.471 17 O -0.557 6.557 18 C -0.102 4.102 19 H 0.135 0.865 20 C 0.070 3.930 21 O -0.303 6.303 22 C 0.104 3.896 23 C -0.145 4.145 24 C -0.092 4.092 25 C -0.153 4.153 26 C -0.046 4.046 27 C -0.135 4.135 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.058 -1.185 -8.334 10.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.194 4.194 4 C -0.185 4.185 5 C 0.006 3.994 6 N -0.318 5.318 7 C 0.111 3.889 8 C -0.581 4.581 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.316 3.684 17 O -0.437 6.437 18 C -0.123 4.123 19 H 0.153 0.847 20 C -0.005 4.005 21 O -0.217 6.217 22 C 0.059 3.941 23 C -0.164 4.164 24 C -0.110 4.110 25 C -0.171 4.171 26 C -0.065 4.065 27 C -0.136 4.136 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.142 0.858 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.205 -1.214 -8.633 10.701 hybrid contribution -0.102 -0.020 1.331 1.335 sum 6.104 -1.233 -7.302 9.596 Atomic orbital electron populations 1.21950 0.94287 1.02468 1.00914 1.20975 0.96287 0.95140 0.96272 1.21784 1.00735 0.95348 1.01493 1.21787 1.01360 0.99506 0.95860 1.21378 0.98186 0.83113 0.96686 1.48141 1.24598 1.06351 1.52663 1.19617 0.79340 0.98386 0.91516 1.21512 0.93302 1.48580 0.94678 0.92122 1.24922 0.94884 0.94897 0.98920 1.69908 0.98211 1.48504 1.36083 0.86541 0.78153 0.78561 0.84551 1.20476 1.20996 1.19754 1.19778 0.85127 0.85254 0.78209 1.90612 1.20951 1.84873 1.47253 1.21586 0.95251 0.92609 1.02819 0.84690 1.23764 1.00918 0.80891 0.94925 1.86817 1.26223 1.28443 1.80186 1.19582 0.84727 0.95929 0.93897 1.20139 0.94285 0.98672 1.03283 1.20768 0.94112 0.99164 0.96912 1.20969 1.00279 0.96282 0.99618 1.20298 0.91952 0.95941 0.98275 1.20378 0.96137 0.98114 0.98994 0.92445 0.93691 0.91826 0.92861 0.92888 0.92621 0.93269 0.93902 0.92318 0.90504 0.90945 0.93521 0.94794 0.92431 0.90754 0.86437 0.85812 0.85598 0.85848 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.10 37.16 0.26 -1.85 16 2 C -0.09 -1.29 0.85 -154.51 -0.13 -1.42 16 3 C -0.14 -1.71 8.47 37.16 0.31 -1.39 16 4 C -0.13 -1.97 7.16 37.16 0.27 -1.70 16 5 C 0.13 2.28 4.61 -4.04 -0.02 2.26 16 6 N -0.59 -11.48 1.96 -175.05 -0.34 -11.82 16 7 C 0.23 5.07 3.52 -5.19 -0.02 5.05 16 8 C -0.54 -13.48 8.95 -34.44 -0.31 -13.79 16 9 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -23.55 13.29 55.43 0.74 -22.81 16 12 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 C 0.53 10.47 5.36 -10.99 -0.06 10.42 16 17 O -0.56 -11.78 13.77 5.56 0.08 -11.70 16 18 C -0.10 -1.92 2.47 -91.56 -0.23 -2.14 16 19 H 0.14 2.78 6.81 -51.93 -0.35 2.43 16 20 C 0.07 1.19 7.13 38.06 0.27 1.46 16 21 O -0.30 -5.32 11.11 -20.18 -0.22 -5.54 16 22 C 0.10 1.80 7.03 -38.95 -0.27 1.52 16 23 C -0.15 -2.11 10.06 -39.30 -0.40 -2.51 16 24 C -0.09 -1.19 10.02 -39.67 -0.40 -1.58 16 25 C -0.15 -2.14 10.07 -39.52 -0.40 -2.54 16 26 C -0.05 -0.79 9.35 -39.72 -0.37 -1.16 16 27 C -0.14 -2.46 5.28 -104.10 -0.55 -3.01 16 28 H 0.06 0.90 7.80 -51.93 -0.41 0.49 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.07 6.12 -51.93 -0.32 0.75 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.83 6.60 -51.93 -0.34 0.49 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.96 7.79 -51.93 -0.40 0.56 16 37 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 38 H 0.07 1.31 7.36 -51.93 -0.38 0.93 16 39 H 0.05 1.07 6.05 -51.93 -0.31 0.75 16 40 H 0.03 0.76 5.59 -51.93 -0.29 0.47 16 41 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 42 H 0.07 1.20 7.85 -51.93 -0.41 0.80 16 43 H 0.12 1.86 7.41 -51.93 -0.38 1.48 16 44 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -27.71 370.41 -8.69 -36.41 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.37 Total: 5.51 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.13 Total: -10.78 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.39 Total: -34.63 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.15 Total: -17.25 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.71 -8.69 -36.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113173400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.512 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds