Wall clock time and date at job start Tue Mar 31 2020 11:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47350 * 2 1 4 4 C 1.53001 * 109.47075 * 239.99681 * 2 1 3 5 5 C 1.53001 * 109.46973 * 120.00170 * 2 1 3 6 6 N 1.46504 * 109.47434 * 54.73861 * 5 2 1 7 7 C 1.46500 * 119.99742 * 270.38379 * 6 5 2 8 8 C 1.50699 * 109.47047 * 268.36021 * 7 6 5 9 9 H 1.07992 * 120.00108 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99738 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99777 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99825 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47141 * 89.99816 * 12 10 8 14 14 H 1.48502 * 109.46852 * 209.99182 * 12 10 8 15 15 H 1.48496 * 109.47272 * 329.99687 * 12 10 8 16 16 C 1.34777 * 119.99691 * 90.38319 * 6 5 2 17 17 O 1.21277 * 120.00009 * 3.57467 * 16 6 5 18 18 C 1.50700 * 119.99599 * 183.56982 * 16 6 5 19 19 H 1.08995 * 110.85461 * 319.81787 * 18 16 6 20 20 C 1.54710 * 110.93180 * 83.53409 * 18 16 6 21 21 O 1.43784 * 102.77333 * 143.39184 * 20 18 16 22 22 C 1.36138 * 109.19864 * 332.10096 * 21 20 18 23 23 C 1.39282 * 129.89344 * 198.82459 * 22 21 20 24 24 C 1.37940 * 120.23994 * 180.96483 * 23 22 21 25 25 C 1.38284 * 120.34694 * 359.95893 * 24 23 22 26 26 C 1.38357 * 119.76829 * 359.85268 * 25 24 23 27 27 C 1.37740 * 119.98052 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.46960 * 299.99998 * 1 2 3 29 29 H 1.08997 * 109.46808 * 59.99985 * 1 2 3 30 30 H 1.09000 * 109.46661 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46868 * 300.00082 * 3 2 1 33 33 H 1.09006 * 109.46686 * 59.99602 * 3 2 1 34 34 H 1.08994 * 109.47600 * 305.95453 * 4 2 1 35 35 H 1.08999 * 109.46871 * 65.95386 * 4 2 1 36 36 H 1.09003 * 109.46800 * 185.95139 * 4 2 1 37 37 H 1.09003 * 109.46808 * 294.73579 * 5 2 1 38 38 H 1.09007 * 109.47103 * 174.74201 * 5 2 1 39 39 H 1.08993 * 109.47117 * 28.35983 * 7 6 5 40 40 H 1.09004 * 109.46814 * 148.35753 * 7 6 5 41 41 H 0.97006 * 119.99638 * 180.02562 * 11 10 8 42 42 H 1.09006 * 110.74889 * 25.07187 * 20 18 16 43 43 H 1.08999 * 110.91196 * 261.78461 * 20 18 16 44 44 H 1.07999 * 119.87991 * 0.93891 * 23 22 21 45 45 H 1.07993 * 119.82552 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.11387 * 179.83482 * 25 24 23 47 47 H 1.08003 * 120.00623 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.4510 -2.0611 1.3143 7 6 0.1756 -2.2678 2.0048 8 6 0.4365 -2.6257 3.4452 9 1 1.4508 -2.6930 3.8097 10 6 -0.6198 -2.8684 4.2975 11 7 -1.8551 -2.7870 3.8534 12 14 -0.2964 -3.3127 6.0828 13 1 -0.2449 -2.0737 6.8998 14 1 -1.3875 -4.1886 6.5803 15 1 1.0002 -4.0290 6.1876 16 6 2.0825 -3.1035 0.7388 17 8 3.1689 -2.9449 0.2236 18 6 1.4386 -4.4660 0.7355 19 1 0.9516 -4.6673 1.6896 20 6 0.4370 -4.6012 -0.4358 21 8 0.6077 -5.9694 -0.8437 22 6 1.8748 -6.3699 -0.5481 23 6 2.6115 -7.4424 -1.0451 24 6 3.8905 -7.6789 -0.5857 25 6 4.4530 -6.8539 0.3710 26 6 3.7292 -5.7841 0.8669 27 6 2.4532 -5.5440 0.4069 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.5923 -1.7135 -1.3041 35 1 1.7663 -0.1497 -2.1360 36 1 3.1248 -0.8145 -1.1975 37 1 1.7556 -0.1559 2.1367 38 1 3.1260 -0.8036 1.2034 39 1 -0.4148 -1.3528 1.9590 40 1 -0.3716 -3.0778 1.5225 41 1 -2.5982 -2.9574 4.4531 42 1 0.6972 -3.9210 -1.2469 43 1 -0.5837 -4.4236 -0.0973 44 1 2.1797 -8.0914 -1.7926 45 1 4.4555 -8.5127 -0.9753 46 1 5.4536 -7.0442 0.7299 47 1 4.1646 -5.1375 1.6144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113173400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:55 Heat of formation + Delta-G solvation = -63.805091 kcal Electronic energy + Delta-G solvation = -28221.421066 eV Core-core repulsion = 24561.734550 eV Total energy + Delta-G solvation = -3659.686516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48462 -40.72149 -38.35134 -38.12594 -36.11598 -34.31132 -33.67472 -31.04551 -30.42337 -29.54016 -28.14014 -28.10694 -27.28680 -25.23072 -24.44658 -23.40895 -22.86673 -20.36598 -19.53251 -18.78628 -18.44363 -18.17553 -17.67238 -16.91258 -16.69944 -16.49642 -16.34792 -15.83912 -15.16782 -15.15642 -14.81735 -14.62249 -14.42995 -14.36007 -14.08845 -13.99126 -13.65444 -13.54526 -13.36916 -13.01730 -12.99451 -12.80097 -12.61280 -12.56697 -12.52948 -12.47344 -12.09984 -12.00664 -11.92844 -11.75737 -11.70419 -11.53143 -11.49493 -10.77207 -10.54764 -9.83626 -9.40599 -9.15021 -8.22584 -6.36504 0.33268 0.42189 1.37153 1.40228 1.48194 1.63798 2.15610 2.28066 2.41132 2.82127 3.07665 3.33883 3.54492 3.66609 3.88043 3.89816 3.92377 4.04538 4.09248 4.22467 4.36588 4.45327 4.51443 4.56822 4.60838 4.62449 4.69780 4.76052 4.82266 4.88021 4.92495 4.96399 5.04913 5.05735 5.07215 5.20190 5.22106 5.31809 5.36830 5.47332 5.47633 5.51265 5.56186 5.62296 5.64945 5.86845 6.05833 6.17927 6.53419 6.79107 7.27137 7.38738 8.81947 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.006118 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.555247 B = 4575.805053 C = 6459.213189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.120 4.120 5 C 0.126 3.874 6 N -0.587 5.587 7 C 0.249 3.751 8 C -0.551 4.551 9 H 0.047 0.953 10 C 0.027 3.973 11 N -0.914 5.914 12 Si 0.948 3.052 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.276 1.276 16 C 0.531 3.469 17 O -0.571 6.571 18 C -0.102 4.102 19 H 0.108 0.892 20 C 0.078 3.922 21 O -0.310 6.310 22 C 0.078 3.922 23 C -0.143 4.143 24 C -0.079 4.079 25 C -0.147 4.147 26 C -0.070 4.070 27 C -0.165 4.165 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.027 0.973 41 H 0.268 0.732 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.150 0.850 45 H 0.172 0.828 46 H 0.155 0.845 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 -1.840 -9.308 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.177 4.177 5 C 0.003 3.997 6 N -0.316 5.316 7 C 0.128 3.872 8 C -0.589 4.589 9 H 0.065 0.935 10 C -0.174 4.174 11 N -0.553 5.553 12 Si 0.774 3.226 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.201 1.201 16 C 0.319 3.681 17 O -0.452 6.452 18 C -0.123 4.123 19 H 0.126 0.874 20 C 0.002 3.998 21 O -0.225 6.225 22 C 0.034 3.966 23 C -0.161 4.161 24 C -0.096 4.096 25 C -0.165 4.165 26 C -0.088 4.088 27 C -0.166 4.166 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.140 0.860 44 H 0.168 0.832 45 H 0.189 0.811 46 H 0.172 0.828 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.305 -1.856 -9.607 12.210 hybrid contribution -0.350 0.129 1.613 1.656 sum 6.954 -1.727 -7.994 10.735 Atomic orbital electron populations 1.21883 0.94292 1.01309 1.01644 1.20943 0.96153 0.96480 0.94613 1.21742 1.01059 0.93325 1.02656 1.21699 1.00283 0.98775 0.96946 1.21530 0.97714 0.82343 0.98078 1.48090 1.23893 1.07313 1.52352 1.19264 0.80114 0.97510 0.90293 1.21700 0.92624 1.48400 0.96191 0.93514 1.25535 0.94756 0.94919 1.02157 1.69980 0.98744 1.49334 1.37192 0.85705 0.77771 0.78409 0.80737 1.19834 1.20547 1.20064 1.19927 0.84862 0.85575 0.77769 1.90584 1.21483 1.85170 1.48001 1.21478 0.96097 0.92498 1.02200 0.87428 1.23698 1.00586 0.81169 0.94324 1.86778 1.26909 1.28387 1.80397 1.19946 0.84765 0.97210 0.94721 1.20621 0.94655 0.97679 1.03189 1.21300 0.93456 0.99474 0.95385 1.21371 1.01222 0.94852 0.99022 1.20442 0.92069 0.97396 0.98918 1.20486 0.96903 0.98632 1.00590 0.93149 0.91437 0.93945 0.92366 0.91009 0.92185 0.95369 0.91581 0.93527 0.91022 0.91657 0.94273 0.95477 0.92275 0.90260 0.86042 0.83213 0.81075 0.82764 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 7.10 71.98 0.51 -3.52 16 2 C -0.08 -2.39 0.85 -52.18 -0.04 -2.44 16 3 C -0.13 -3.04 8.47 71.98 0.61 -2.43 16 4 C -0.12 -3.62 7.16 71.98 0.52 -3.11 16 5 C 0.13 4.53 4.61 86.38 0.40 4.93 16 6 N -0.59 -23.91 1.96 -826.14 -1.62 -25.53 16 7 C 0.25 11.38 3.52 85.63 0.30 11.68 16 8 C -0.55 -28.29 8.95 25.60 0.23 -28.06 16 9 H 0.05 2.49 7.81 -2.91 -0.02 2.46 16 10 C 0.03 1.42 5.46 84.65 0.46 1.88 16 11 N -0.91 -49.17 13.29 21.45 0.28 -48.88 16 12 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 16 C 0.53 21.98 5.36 87.66 0.47 22.45 16 17 O -0.57 -25.01 13.77 -3.02 -0.04 -25.05 16 18 C -0.10 -4.04 2.47 -11.40 -0.03 -4.07 16 19 H 0.11 4.78 6.81 -2.39 -0.02 4.77 16 20 C 0.08 2.73 7.13 72.57 0.52 3.25 16 21 O -0.31 -11.08 11.11 -95.12 -1.06 -12.13 16 22 C 0.08 2.70 7.03 22.68 0.16 2.86 16 23 C -0.14 -3.82 10.06 22.45 0.23 -3.60 16 24 C -0.08 -1.75 10.02 22.21 0.22 -1.53 16 25 C -0.15 -3.77 10.07 22.31 0.22 -3.55 16 26 C -0.07 -2.39 9.35 22.18 0.21 -2.18 16 27 C -0.16 -6.18 5.28 -19.53 -0.10 -6.29 16 28 H 0.05 1.57 7.80 -2.39 -0.02 1.55 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.44 6.12 -2.39 -0.01 1.43 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.03 0.95 6.60 -2.39 -0.02 0.93 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 37 H 0.07 2.61 8.08 -2.39 -0.02 2.59 16 38 H 0.06 2.42 7.36 -2.38 -0.02 2.41 16 39 H 0.04 1.86 6.05 -2.39 -0.01 1.84 16 40 H 0.03 1.28 5.59 -2.38 -0.01 1.27 16 41 H 0.27 13.75 8.31 -92.70 -0.77 12.98 16 42 H 0.08 2.67 7.85 -2.38 -0.02 2.65 16 43 H 0.12 4.07 7.41 -2.39 -0.02 4.05 16 44 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 45 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 46 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 47 H 0.11 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -60.82 370.41 5.42 -55.40 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.95 Total: 26.06 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 4.88 Total: -13.72 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -1.34 Total: -74.41 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.10 Total: -37.18 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -60.82 5.42 -55.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113173400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.409 kcal (2) G-P(sol) polarization free energy of solvation -60.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds